MGE detailed information
MGE type: Prophage MGE length: 70674 bp
Accession: NZ_CP078139 Location: 147514..218187 Organism: Pseudomonas savastanoi pv. savastanoi strain PVFi1 Replicon: chromosome
Accession: NZ_CP078139 Location: 147514..218187 Organism: Pseudomonas savastanoi pv. savastanoi strain PVFi1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HQ966_RS00670 (HQ966_00655) | 143218..143490 | + | 273 | Protein_134 | Tn3 family transposase | - |
| HQ966_RS00675 (HQ966_00660) | 143533..143757 | - | 225 | WP_060410047.1 | hypothetical protein | - |
| HQ966_RS00680 (HQ966_00665) | 143795..143899 | - | 105 | Protein_136 | TraR/DksA family transcriptional regulator | - |
| HQ966_RS00685 (HQ966_00670) | 144036..144173 | + | 138 | WP_081084078.1 | Tn3 family transposase | - |
| HQ966_RS00690 (HQ966_00675) | 144269..144649 | + | 381 | WP_044424089.1 | CesT family type III secretion system chaperone | - |
| HQ966_RS00695 (HQ966_00680) | 144813..145946 | + | 1134 | WP_002556172.1 | T3SS effector HopA1 family protein | - |
| HQ966_RS00700 (HQ966_00685) | 146052..146220 | + | 169 | Protein_140 | IS91 family transposase | - |
| HQ966_RS00705 (HQ966_00690) | 146411..147109 | - | 699 | WP_031598793.1 | GNAT family N-acetyltransferase | - |
| HQ966_RS00710 (HQ966_00695) | 147254..147560 | - | 307 | Protein_142 | HU family DNA-binding protein | - |
| HQ966_RS00715 (HQ966_00700) | 147514..148736 | + | 1223 | WP_095178853.1 | IS3 family transposase IS51 | Transposase |
| HQ966_RS00720 (HQ966_00705) | 148777..148857 | - | 81 | Protein_144 | HU family DNA-binding protein | - |
| HQ966_RS00725 (HQ966_00710) | 149078..149791 | - | 714 | WP_057407242.1 | UPF0149 family protein | - |
| HQ966_RS00730 (HQ966_00715) | 149742..152795 | - | 3054 | WP_144002201.1 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| HQ966_RS00735 (HQ966_00720) | 152800..153375 | - | 576 | WP_031599078.1 | Tn3 family transposase ISPsy39 | Transposase |
| HQ966_RS00740 (HQ966_00725) | 153560..153760 | - | 201 | Protein_148 | Type IV secretion system protein virB1 | VF |
| HQ966_RS00745 (HQ966_00730) | 154152..154808 | - | 657 | WP_223227237.1 | XRE family transcriptional regulator | - |
| HQ966_RS00750 (HQ966_00735) | 154978..156155 | + | 1178 | WP_162837006.1 | IS3 family transposase ISPsy28 | Transposase |
| HQ966_RS00755 (HQ966_00740) | 156205..156948 | - | 744 | WP_237901163.1 | IS21 family transposase ISPsy4 | Transposase |
| HQ966_RS00760 (HQ966_00745) | 156945..157967 | - | 1023 | WP_031598602.1 | IS21 family transposase ISPsy4 | Transposase |
| HQ966_RS00765 (HQ966_00750) | 158563..159192 | + | 630 | WP_031598601.1 | Sporulation initiation inhibitor protein Soj | VF |
| HQ966_RS00770 (HQ966_00755) | 159189..159419 | + | 231 | WP_019742104.1 | hypothetical protein | - |
| HQ966_RS00775 (HQ966_00760) | 159473..159982 | - | 510 | WP_031598600.1 | GNAT family N-acetyltransferase | - |
| HQ966_RS00780 (HQ966_00765) | 159979..160260 | - | 282 | WP_019742102.1 | DUF1778 domain-containing protein | - |
| HQ966_RS00785 (HQ966_00770) | 160613..160870 | + | 258 | WP_003381346.1 | Arc family DNA-binding protein | Antitoxin Detail |
| HQ966_RS00790 (HQ966_00775) | 160867..161286 | + | 420 | WP_002556053.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HQ966_RS00795 (HQ966_00780) | 161327..161965 | + | 639 | WP_031597920.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| HQ966_RS00800 (HQ966_00785) | 162501..169109 | + | 6609 | WP_237901164.1 | XopAD/skwp family type III secretion system effector | - |
| HQ966_RS00805 (HQ966_00790) | 169087..169518 | + | 432 | WP_237901165.1 | hypothetical protein | - |
| HQ966_RS00810 (HQ966_00795) | 169633..170436 | - | 804 | Protein_162 | succinyl-diaminopimelate desuccinylase | - |
| HQ966_RS00815 (HQ966_00800) | 170629..171831 | + | 1203 | WP_002556162.1 | succinyldiaminopimelate transaminase | - |
| HQ966_RS00820 (HQ966_00805) | 172343..173635 | + | 1293 | WP_031598640.1 | M20 family metallopeptidase | - |
| HQ966_RS00825 | 173806..174181 | - | 376 | Protein_165 | transposase | - |
| HQ966_RS00830 (HQ966_00815) | 174589..175785 | + | 1197 | Protein_166 | IS21 family transposase ISPsy20 | Transposase |
| HQ966_RS00840 (HQ966_00825) | 177100..177924 | + | 825 | Protein_168 | IS91 family transposase IS801 | Transposase |
| HQ966_RS00845 (HQ966_00830) | 178279..178608 | + | 330 | WP_031598753.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| HQ966_RS00850 (HQ966_00835) | 178535..178855 | + | 321 | WP_015060653.1 | type II toxin-antitoxin system YafQ family toxin | - |
| HQ966_RS00855 (HQ966_00840) | 179242..179862 | + | 621 | WP_031598751.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| HQ966_RS00860 (HQ966_00845) | 180046..181659 | + | 1614 | WP_031598748.1 | Methyl-accepting chemotaxis protein CtpH | VF |
| HQ966_RS00865 (HQ966_00850) | 181701..181901 | + | 201 | Protein_173 | AAA family ATPase | - |
| HQ966_RS00870 (HQ966_00855) | 182006..182761 | - | 756 | WP_002552598.1 | IS21 family transposase ISPsy40 | Transposase |
| HQ966_RS00875 (HQ966_00860) | 182782..184197 | - | 1416 | WP_237901166.1 | IS21 family transposase ISPsy14 | Transposase |
| HQ966_RS00880 | 184404..184625 | + | 222 | Protein_176 | kinase | - |
| HQ966_RS00890 (HQ966_00870) | 186020..186271 | - | 252 | Protein_178 | transcriptional regulator | - |
| HQ966_RS00895 (HQ966_00875) | 186322..187131 | - | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| HQ966_RS00900 (HQ966_00880) | 187128..188150 | - | 1023 | WP_031598602.1 | IS21 family transposase ISPsy4 | Transposase |
| HQ966_RS00905 (HQ966_00885) | 188334..189314 | - | 981 | WP_044424202.1 | IS5 family transposase ISPa41 | Transposase |
| HQ966_RS00910 (HQ966_00890) | 189376..189701 | + | 326 | Protein_182 | IS3 family transposase ISPsy24 | Transposase |
| HQ966_RS00915 (HQ966_00895) | 189851..191191 | - | 1341 | WP_002556047.1 | Mandelamide hydrolase | VF |
| HQ966_RS00920 (HQ966_00900) | 191234..192907 | - | 1674 | WP_002556046.1 | tryptophan 2-monooxygenase | - |
| HQ966_RS00925 (HQ966_00905) | 192958..194478 | - | 1521 | WP_237901167.1 | IS4 family transposase | - |
| HQ966_RS00930 (HQ966_00910) | 194742..196118 | + | 1377 | WP_002556044.1 | MATE family efflux transporter | - |
| HQ966_RS00935 (HQ966_00915) | 196199..197386 | + | 1188 | WP_031598440.1 | indoleacetate--lysine synthetase | - |
| HQ966_RS00940 (HQ966_00920) | 197874..199082 | + | 1209 | WP_237901160.1 | IS91 family transposase IS801 | Transposase |
| HQ966_RS00945 (HQ966_00925) | 199380..199637 | + | 258 | WP_003381346.1 | Arc family DNA-binding protein | Antitoxin Detail |
| HQ966_RS00950 (HQ966_00930) | 199634..200053 | + | 420 | WP_002556053.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HQ966_RS00955 (HQ966_00935) | 200094..200732 | + | 639 | WP_031597920.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| HQ966_RS00960 (HQ966_00940) | 201268..209157 | + | 7890 | WP_237901168.1 | XopAD/skwp family type III secretion system effector | - |
| HQ966_RS00965 (HQ966_00945) | 209302..209583 | + | 282 | WP_031599130.1 | hypothetical protein | - |
| HQ966_RS00970 (HQ966_00950) | 209564..210187 | + | 624 | Protein_194 | IS91 family transposase IS801 | Transposase |
| HQ966_RS00975 (HQ966_00955) | 210242..210955 | - | 714 | WP_057407242.1 | UPF0149 family protein | - |
| HQ966_RS00980 | 211314..211726 | + | 413 | Protein_196 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| HQ966_RS00985 (HQ966_00970) | 212253..212756 | + | 504 | Protein_197 | DNA-directed DNA polymerase | - |
| HQ966_RS00990 (HQ966_00975) | 212820..214042 | + | 1223 | WP_095178853.1 | IS3 family transposase IS51 | Transposase |
| HQ966_RS00995 (HQ966_00980) | 214106..214261 | + | 156 | WP_230851553.1 | DUF4113 domain-containing protein | - |
| HQ966_RS01000 (HQ966_00985) | 214586..215074 | - | 489 | WP_050512957.1 | hypothetical protein | - |
| HQ966_RS01005 (HQ966_00990) | 215440..216474 | - | 1035 | WP_015060660.1 | IS110 family transposase ISPsy16 | Transposase |
| HQ966_RS01010 (HQ966_00995) | 216814..216972 | - | 159 | Protein_202 | HU family DNA-binding protein | - |
| HQ966_RS01015 (HQ966_01000) | 217036..218187 | + | 1152 | Protein_203 | IS3 family transposase ISPsy29 | Transposase |
| HQ966_RS01020 (HQ966_01005) | 218203..218487 | - | 285 | WP_031595912.1 | hypothetical protein | - |
| HQ966_RS01025 (HQ966_01010) | 218666..220159 | + | 1494 | WP_031595913.1 | YifB family Mg chelatase-like AAA ATPase | - |
| HQ966_RS01030 (HQ966_01015) | 220229..221536 | - | 1308 | WP_002551489.1 | CitMHS family transporter | - |
| HQ966_RS01035 (HQ966_01020) | 221831..222232 | + | 402 | WP_002551490.1 | GFA family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|