MGE detailed information
MGE type: IScluster/Tn MGE length: 29405 bp
Accession: NZ_CP078139 Location: 128542..157946 Organism: Pseudomonas savastanoi pv. savastanoi strain PVFi1 Replicon: chromosome
Accession: NZ_CP078139 Location: 128542..157946 Organism: Pseudomonas savastanoi pv. savastanoi strain PVFi1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HQ966_RS00610 | 128179..128331 | + | 153 | Protein_122 | ATP-binding protein | - |
| HQ966_RS00615 (HQ966_00600) | 128545..129009 | + | 465 | Protein_123 | IS5 family transposase ISPa16 | Transposase |
| HQ966_RS00620 (HQ966_00605) | 129069..129934 | + | 866 | Protein_124 | IS3 family transposase IS1240 | Transposase |
| HQ966_RS00625 (HQ966_00610) | 130281..132398 | + | 2118 | WP_080719030.1 | type III secretion system effector HopD1 | - |
| HQ966_RS00630 (HQ966_00615) | 132514..133737 | - | 1224 | WP_031598314.1 | type III secretion system effector HopQ1-1 | - |
| HQ966_RS00635 (HQ966_00620) | 134168..135281 | + | 1114 | Protein_127 | IS91 family transposase ISPsy3 | Transposase |
| HQ966_RS00640 (HQ966_00625) | 135622..137247 | - | 1626 | WP_237901162.1 | type III secretion system effector protein HopAB1 | - |
| HQ966_RS00645 (HQ966_00630) | 138054..139088 | - | 1035 | WP_015060660.1 | IS110 family transposase ISPsy16 | Transposase |
| HQ966_RS00650 (HQ966_00635) | 139250..139525 | - | 276 | WP_015060661.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HQ966_RS00655 (HQ966_00640) | 139525..139797 | - | 273 | WP_015060662.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| HQ966_RS00660 (HQ966_00645) | 140111..140452 | + | 342 | Protein_132 | IS110 family transposase ISPsy16 | Transposase |
| HQ966_RS00665 (HQ966_00650) | 140486..143002 | - | 2517 | Protein_133 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| HQ966_RS00670 (HQ966_00655) | 143218..143490 | + | 273 | Protein_134 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| HQ966_RS00675 (HQ966_00660) | 143533..143757 | - | 225 | WP_060410047.1 | hypothetical protein | - |
| HQ966_RS00680 (HQ966_00665) | 143795..143899 | - | 105 | Protein_136 | TraR/DksA family transcriptional regulator | - |
| HQ966_RS00685 (HQ966_00670) | 144036..144173 | + | 138 | WP_081084078.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| HQ966_RS00690 (HQ966_00675) | 144269..144649 | + | 381 | WP_044424089.1 | CesT family type III secretion system chaperone | - |
| HQ966_RS00695 (HQ966_00680) | 144813..145946 | + | 1134 | WP_002556172.1 | T3SS effector HopA1 family protein | - |
| HQ966_RS00700 (HQ966_00685) | 146052..146220 | + | 169 | Protein_140 | IS91 family transposase | - |
| HQ966_RS00705 (HQ966_00690) | 146411..147109 | - | 699 | WP_031598793.1 | GNAT family N-acetyltransferase | - |
| HQ966_RS00710 (HQ966_00695) | 147254..147560 | - | 307 | Protein_142 | HU family DNA-binding protein | - |
| HQ966_RS00715 (HQ966_00700) | 147514..148736 | + | 1223 | WP_095178853.1 | IS3 family transposase IS51 | Transposase |
| HQ966_RS00720 (HQ966_00705) | 148777..148857 | - | 81 | Protein_144 | HU family DNA-binding protein | - |
| HQ966_RS00725 (HQ966_00710) | 149078..149791 | - | 714 | WP_057407242.1 | UPF0149 family protein | - |
| HQ966_RS00730 (HQ966_00715) | 149742..152795 | - | 3054 | WP_144002201.1 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| HQ966_RS00735 (HQ966_00720) | 152800..153375 | - | 576 | WP_031599078.1 | Tn3 family transposase ISPsy39 | Transposase |
| HQ966_RS00740 (HQ966_00725) | 153560..153760 | - | 201 | Protein_148 | Type IV secretion system protein virB1 | VF |
| HQ966_RS00745 (HQ966_00730) | 154152..154808 | - | 657 | WP_223227237.1 | XRE family transcriptional regulator | - |
| HQ966_RS00750 (HQ966_00735) | 154978..156155 | + | 1178 | WP_162837006.1 | IS3 family transposase ISPsy28 | Transposase |
| HQ966_RS00755 (HQ966_00740) | 156205..156948 | - | 744 | WP_237901163.1 | IS21 family transposase ISPsy4 | Transposase |
| HQ966_RS00760 (HQ966_00745) | 156945..157967 | - | 1023 | WP_031598602.1 | IS21 family transposase ISPsy4 | Transposase |
| HQ966_RS00765 (HQ966_00750) | 158563..159192 | + | 630 | WP_031598601.1 | ParA family partition ATPase | - |
| HQ966_RS00770 (HQ966_00755) | 159189..159419 | + | 231 | WP_019742104.1 | hypothetical protein | - |
| HQ966_RS00775 (HQ966_00760) | 159473..159982 | - | 510 | WP_031598600.1 | GNAT family N-acetyltransferase | - |
| HQ966_RS00780 (HQ966_00765) | 159979..160260 | - | 282 | WP_019742102.1 | DUF1778 domain-containing protein | - |
| HQ966_RS00785 (HQ966_00770) | 160613..160870 | + | 258 | WP_003381346.1 | Arc family DNA-binding protein | Antitoxin Detail |
| HQ966_RS00790 (HQ966_00775) | 160867..161286 | + | 420 | WP_002556053.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HQ966_RS00795 (HQ966_00780) | 161327..161965 | + | 639 | WP_031597920.1 | recombinase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|