MGE detailed information
MGE type: Conjugative plasmid MGE length: 94857 bp
Accession: NZ_CP077697 Location: 1..94857 Organism: Salmonella enterica subsp. enterica strain CFSAN058598 Replicon: plasmid pCFSAN058598_01
Accession: NZ_CP077697 Location: 1..94857 Organism: Salmonella enterica subsp. enterica strain CFSAN058598 Replicon: plasmid pCFSAN058598_01
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DAX72_RS23620 (1287) | 1287..2027 | - | 741 | WP_023972474.1 | site-specific integrase | - |
| DAX72_RS23625 (2822) | 2822..3406 | + | 585 | WP_139148289.1 | hypothetical protein | - |
| DAX72_RS23630 (3450) | 3450..4163 | + | 714 | WP_023972476.1 | putative fimbrial chaperone YraI | VF |
| DAX72_RS23635 (4174) | 4174..6684 | + | 2511 | WP_023972477.1 | Outer membrane usher protein SfmD | VF |
| DAX72_RS23640 (6699) | 6699..7589 | + | 891 | WP_070812942.1 | hypothetical protein | - |
| DAX72_RS24670 (7790) | 7790..8021 | - | 232 | Protein_6 | IgA-specific serine endopeptidase autotransporter | VF |
| DAX72_RS24675 (8188) | 8188..8865 | - | 678 | Protein_7 | IgA-specific serine endopeptidase autotransporter | VF |
| DAX72_RS23650 (9123) | 9123..9737 | - | 615 | WP_023972137.1 | hypothetical protein | - |
| DAX72_RS23655 (10649) | 10649..11747 | + | 1099 | WP_097377577.1 | IS3 family transposase ISYps8 | Transposase |
| DAX72_RS23660 (12482) | 12482..16381 | + | 3900 | WP_220575002.1 | Temperature-sensitive hemagglutinin tsh autotransporter | VF |
| DAX72_RS23665 (16526) | 16526..17350 | - | 825 | WP_070812938.1 | CFA/I fimbrial subunit D | VF |
| DAX72_RS23670 (17696) | 17696..18658 | + | 963 | Protein_12 | ISNCY family transposase ISKpn21 | Transposase |
| DAX72_RS23675 (18725) | 18725..22661 | - | 3937 | Protein_13 | Serine protease EspC | VF |
| DAX72_RS23680 (23027) | 23027..23233 | - | 207 | WP_023972121.1 | ANR family transcriptional regulator | - |
| DAX72_RS23685 (23449) | 23449..24270 | - | 822 | WP_023972122.1 | helix-turn-helix domain-containing protein | - |
| DAX72_RS23690 (24989) | 24989..25495 | - | 507 | WP_031619420.1 | superoxide dismutase family protein | - |
| DAX72_RS23695 (26044) | 26044..26803 | + | 760 | Protein_17 | IS110 family transposase ISEc11 | Transposase |
| DAX72_RS23700 (27163) | 27163..27552 | + | 390 | WP_023972293.1 | cytochrome b562 | - |
| DAX72_RS23705 (27701) | 27701..27859 | - | 159 | WP_023972292.1 | hypothetical protein | - |
| DAX72_RS23710 (28841) | 28841..29860 | - | 1020 | WP_070812939.1 | plasmid replication initiator RepA | - |
| DAX72_RS23715 (29853) | 29853..30404 | - | 552 | WP_031233082.1 | plasmid replication initiator RepA | - |
| DAX72_RS24680 (30423) | 30423..30598 | - | 176 | Protein_22 | protein CopA/IncA | - |
| DAX72_RS23725 (30718) | 30718..30954 | - | 237 | WP_023972288.1 | replication regulatory protein RepA | - |
| DAX72_RS23730 (31085) | 31085..31333 | - | 249 | WP_023972287.1 | Phospholipase D | VF |
| DAX72_RS23735 (31330) | 31330..31638 | - | 309 | WP_071790373.1 | phospholipase D-like domain-containing protein | - |
| DAX72_RS23740 (31807) | 31807..32538 | - | 732 | WP_023972285.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| DAX72_RS23745 (32535) | 32535..33101 | - | 567 | WP_031233080.1 | DUF2726 domain-containing protein | - |
| DAX72_RS23750 (33120) | 33120..38405 | - | 5286 | WP_023972283.1 | Multifunctional conjugation protein TraI | Relaxase |
| DAX72_RS23755 (38405) | 38405..40648 | - | 2244 | WP_023972282.1 | type IV conjugative transfer system coupling protein TraD | - |
| DAX72_RS23760 (40798) | 40798..41535 | - | 738 | WP_023197467.1 | conjugal transfer complement resistance protein TraT | - |
| DAX72_RS23765 (41709) | 41709..42287 | - | 579 | WP_228413453.1 | conjugal transfer protein TraS | - |
| DAX72_RS23770 (42294) | 42294..45188 | - | 2895 | WP_023972280.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| DAX72_RS23775 (45190) | 45190..46551 | - | 1362 | WP_031233079.1 | conjugal transfer pilus assembly protein TraH | - |
| DAX72_RS23780 (46554) | 46554..47162 | - | 609 | WP_023972278.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| DAX72_RS23785 (47187) | 47187..47963 | - | 777 | WP_023972277.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| DAX72_RS23790 (47960) | 47960..49789 | - | 1830 | WP_070812940.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| DAX72_RS23795 (49786) | 49786..50388 | - | 603 | WP_023972275.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| DAX72_RS23800 (50397) | 50397..50765 | - | 369 | WP_023972274.1 | hypothetical protein | - |
| DAX72_RS23805 (50776) | 50776..51762 | - | 987 | WP_023972273.1 | conjugal transfer pilus assembly protein TraU | - |
| DAX72_RS23810 (51759) | 51759..52394 | - | 636 | WP_023972272.1 | type-F conjugative transfer system protein TraW | - |
| DAX72_RS23815 (52394) | 52394..52843 | - | 450 | WP_023972271.1 | type-F conjugative transfer system protein TrbI | - |
| DAX72_RS23820 (52840) | 52840..55431 | - | 2592 | WP_023972270.1 | type IV secretion system protein TraC | - |
| DAX72_RS23825 (55442) | 55442..56083 | - | 642 | WP_023972269.1 | type IV conjugative transfer system lipoprotein TraV | - |
| DAX72_RS23830 (56102) | 56102..56542 | - | 441 | WP_023972268.1 | hypothetical protein | - |
| DAX72_RS23835 (56542) | 56542..57006 | - | 465 | WP_023972267.1 | conjugal transfer protein TraP | - |
| DAX72_RS23840 (56996) | 56996..57469 | - | 474 | WP_023972266.1 | hypothetical protein | - |
| DAX72_RS23845 (57453) | 57453..57638 | - | 186 | WP_031233071.1 | hypothetical protein | - |
| DAX72_RS23850 (57642) | 57642..57866 | - | 225 | WP_023972264.1 | TraR/DksA C4-type zinc finger protein | - |
| DAX72_RS23855 (57978) | 57978..59339 | - | 1362 | WP_023972263.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| DAX72_RS23860 (59326) | 59326..60066 | - | 741 | WP_023972262.1 | type-F conjugative transfer system secretin TraK | - |
| DAX72_RS23865 (60056) | 60056..60619 | - | 564 | WP_023972261.1 | type IV conjugative transfer system protein TraE | - |
| DAX72_RS23870 (60639) | 60639..60944 | - | 306 | WP_023972260.1 | type IV conjugative transfer system protein TraL | - |
| DAX72_RS23875 (60946) | 60946..61305 | - | 360 | WP_023972259.1 | type IV conjugative transfer system pilin TraA | - |
| DAX72_RS23880 (61418) | 61418..61651 | - | 234 | WP_023972258.1 | TraY domain-containing protein | - |
| DAX72_RS23885 (61857) | 61857..62306 | - | 450 | WP_023972256.1 | helix-turn-helix domain-containing protein | - |
| DAX72_RS23890 (62606) | 62606..62989 | - | 384 | WP_023972255.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| DAX72_RS23895 (63458) | 63458..63913 | + | 456 | WP_023972254.1 | hypothetical protein | VF |
| DAX72_RS23900 (63924) | 63924..64310 | - | 387 | WP_023972253.1 | antirestriction protein | - |
| DAX72_RS23905 (65100) | 65100..65933 | - | 834 | WP_070812941.1 | N-6 DNA methylase | - |
| DAX72_RS23910 (65980) | 65980..66126 | - | 147 | WP_001159046.1 | hypothetical protein | - |
| DAX72_RS23915 (66221) | 66221..66568 | - | 348 | WP_000550116.1 | hypothetical protein | - |
| DAX72_RS23920 (66625) | 66625..67029 | - | 405 | WP_023972007.1 | hypothetical protein | - |
| DAX72_RS23925 (67873) | 67873..67989 | - | 117 | WP_233791142.1 | type I toxin-antitoxin system Hok family toxin | - |
| DAX72_RS24685 (67940) | 67940..68089 | - | 150 | Protein_64 | FlmC family protein | - |
| - (68075) | 68075..68199 | - | 125 | NuclAT_0 | - | - |
| - (68075) | 68075..68199 | - | 125 | NuclAT_0 | - | - |
| - (68075) | 68075..68199 | - | 125 | NuclAT_0 | - | - |
| - (68075) | 68075..68199 | - | 125 | NuclAT_0 | - | - |
| DAX72_RS23930 (68251) | 68251..68478 | - | 228 | WP_023972005.1 | hypothetical protein | - |
| DAX72_RS23935 (68475) | 68475..69202 | - | 728 | Protein_66 | plasmid SOS inhibition protein A | - |
| DAX72_RS23940 (69199) | 69199..69632 | - | 434 | Protein_67 | conjugation system SOS inhibitor PsiB | - |
| DAX72_RS23945 (69672) | 69672..71681 | - | 2010 | WP_023972002.1 | ParB/RepB/Spo0J family partition protein | - |
| DAX72_RS23950 (71752) | 71752..71994 | - | 243 | WP_023972001.1 | DUF905 domain-containing protein | - |
| DAX72_RS23955 (72047) | 72047..72601 | - | 555 | WP_023972000.1 | single-stranded DNA-binding protein | - |
| DAX72_RS23960 (72932) | 72932..73153 | + | 222 | WP_170918445.1 | hypothetical protein | - |
| DAX72_RS23965 (73294) | 73294..73611 | - | 318 | WP_023971998.1 | hypothetical protein | - |
| DAX72_RS23970 (73677) | 73677..73745 | - | 69 | Protein_73 | DNA polymerase III subunit theta | - |
| DAX72_RS23975 (73938) | 73938..74129 | - | 192 | WP_023972432.1 | hypothetical protein | - |
| DAX72_RS23980 (74172) | 74172..74678 | - | 507 | WP_023972433.1 | antirestriction protein ArdA | - |
| DAX72_RS23985 (74815) | 74815..75018 | + | 204 | WP_023972434.1 | hypothetical protein | - |
| DAX72_RS23990 (75084) | 75084..75863 | - | 780 | WP_023972435.1 | hypothetical protein | - |
| DAX72_RS23995 (75917) | 75917..76336 | - | 420 | WP_023972436.1 | DUF1380 family protein | - |
| DAX72_RS24000 (76347) | 76347..76568 | - | 222 | WP_023972437.1 | hypothetical protein | - |
| DAX72_RS24005 (76568) | 76568..77245 | - | 678 | WP_023972438.1 | DNA methylase | - |
| DAX72_RS24010 (77605) | 77605..78279 | + | 675 | WP_031233189.1 | SOS response-associated peptidase family protein | - |
| DAX72_RS24015 (78459) | 78459..78881 | + | 423 | WP_023972440.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| DAX72_RS24020 (78881) | 78881..80155 | + | 1275 | WP_023972441.1 | Y-family DNA polymerase | - |
| DAX72_RS24025 (80204) | 80204..81577 | - | 1374 | WP_023972442.1 | RES family NAD+ phosphorylase | - |
| DAX72_RS24030 (81627) | 81627..81950 | - | 324 | WP_023972443.1 | hypothetical protein | - |
| DAX72_RS24035 (81947) | 81947..82384 | - | 438 | WP_000843283.1 | hypothetical protein | - |
| DAX72_RS24040 (82384) | 82384..83415 | - | 1032 | WP_023972444.1 | ParB/RepB/Spo0J family partition protein | - |
| DAX72_RS24045 (83415) | 83415..84281 | - | 867 | WP_023972445.1 | AAA family ATPase | - |
| DAX72_RS24050 (84962) | 84962..85537 | - | 576 | WP_031233190.1 | PIN domain-containing protein | Toxin Detail |
| DAX72_RS24055 (85537) | 85537..85998 | - | 462 | WP_023972447.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| DAX72_RS24690 (86196) | 86196..86291 | - | 96 | Protein_91 | malate dehydrogenase | - |
| DAX72_RS24060 (86307) | 86307..87083 | - | 777 | Protein_92 | site-specific integrase | - |
| DAX72_RS24065 (87080) | 87080..87787 | - | 708 | WP_023972450.1 | hypothetical protein | - |
| DAX72_RS24070 (87831) | 87831..88145 | - | 315 | WP_139148288.1 | hypothetical protein | - |
| DAX72_RS24075 (88720) | 88720..88950 | + | 231 | WP_023972452.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| DAX72_RS24080 (88947) | 88947..89375 | + | 429 | WP_023972453.1 | PIN domain-containing protein | Toxin Detail |
| DAX72_RS24085 (89416) | 89416..90294 | - | 879 | WP_023972454.1 | restriction endonuclease | - |
| DAX72_RS24090 (90555) | 90555..91169 | + | 615 | WP_023972455.1 | DNA-binding protein | - |
| DAX72_RS24095 (91546) | 91546..92058 | + | 513 | WP_023972457.1 | hypothetical protein | - |
| DAX72_RS24100 (92083) | 92083..92373 | + | 291 | WP_023972458.1 | hypothetical protein | - |
| DAX72_RS24105 (92370) | 92370..92633 | + | 264 | WP_023972459.1 | hypothetical protein | - |
| DAX72_RS24110 (92719) | 92719..93266 | - | 548 | Protein_102 | N-acetyltransferase | - |
| DAX72_RS24115 (93277) | 93277..93519 | - | 243 | WP_023972461.1 | YjhX family toxin | - |
| DAX72_RS24120 (93733) | 93733..94101 | + | 369 | Protein_104 | DUF302 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|