MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 149690 bp
Accession: NZ_CP076280 Location: 1..149690 Organism: Escherichia coli strain SA53-3 Replicon: plasmid pSA53IncF
Accession: NZ_CP076280 Location: 1..149690 Organism: Escherichia coli strain SA53-3 Replicon: plasmid pSA53IncF
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7A19_RS24845 (165) | 165..1160 | + | 996 | Protein_1 | IS21 family transposase IS21 | Transposase |
| A7A19_RS24850 (1203) | 1203..1730 | - | 528 | Protein_2 | transposase | - |
| A7A19_RS24855 (1844) | 1844..2233 | - | 390 | WP_001172748.1 | cytochrome b562 | - |
| A7A19_RS24860 (2277) | 2277..4487 | - | 2211 | WP_000592771.1 | Catalase-peroxidase | VF |
| A7A19_RS24865 (4695) | 4695..5015 | + | 321 | WP_251766735.1 | hypothetical protein | - |
| A7A19_RS24870 (5060) | 5060..6142 | + | 1083 | Protein_6 | IS91 family transposase ISEc37 | Transposase |
| A7A19_RS24875 (6181) | 6181..7719 | - | 1539 | WP_025380472.1 | IS66 family transposase ISEc8 | Transposase |
| A7A19_RS24880 (7769) | 7769..8116 | - | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| A7A19_RS24885 (8113) | 8113..8493 | - | 381 | WP_024182938.1 | IS66 family transposase ISEc8 | Transposase |
| A7A19_RS24890 (8582) | 8582..8725 | - | 144 | WP_257122958.1 | hypothetical protein | - |
| A7A19_RS24895 (8869) | 8869..10020 | - | 1152 | WP_257122930.1 | quinone-dependent L-lactate dehydrogenase | - |
| A7A19_RS24900 (10017) | 10017..10793 | - | 777 | WP_257122931.1 | transcriptional regulator LldR | - |
| A7A19_RS24905 (10793) | 10793..12448 | - | 1656 | WP_257122933.1 | L-lactate permease | - |
| A7A19_RS24910 (12902) | 12902..13240 | + | 339 | WP_257122934.1 | hypothetical protein | - |
| A7A19_RS24915 (13318) | 13318..13995 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| A7A19_RS24920 (13995) | 13995..14342 | + | 348 | WP_174498286.1 | IS66 family transposase ISCro1 | Transposase |
| A7A19_RS24925 (14362) | 14362..15933 | + | 1572 | WP_257122935.1 | IS66 family transposase ISCro1 | Transposase |
| A7A19_RS24930 (15962) | 15962..16177 | + | 216 | Protein_18 | DUF4113 domain-containing protein | - |
| A7A19_RS24935 (16179) | 16179..16595 | - | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| A7A19_RS24940 (16588) | 16588..17568 | - | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| A7A19_RS24945 (17982) | 17982..18290 | - | 309 | WP_000030199.1 | hypothetical protein | - |
| A7A19_RS24950 (18377) | 18377..19021 | - | 645 | WP_001144036.1 | ParA family protein | - |
| A7A19_RS24955 (19201) | 19201..19980 | - | 780 | WP_006704469.1 | site-specific integrase | - |
| A7A19_RS24960 (19982) | 19982..20395 | - | 414 | WP_016231903.1 | hypothetical protein | - |
| A7A19_RS24965 (20919) | 20919..21308 | - | 390 | WP_257122936.1 | hypothetical protein | - |
| A7A19_RS24970 (21322) | 21322..21525 | - | 204 | Protein_26 | transposase | - |
| A7A19_RS24975 (22628) | 22628..23284 | + | 657 | WP_257122937.1 | PIG-L deacetylase family protein | - |
| A7A19_RS24980 (23295) | 23295..24491 | + | 1197 | WP_096934553.1 | glycosyltransferase family 2 protein | - |
| A7A19_RS24985 (24469) | 24469..25050 | + | 582 | WP_096934554.1 | Bifunctional protein GlmU | VF |
| A7A19_RS24990 (25052) | 25052..25825 | + | 774 | WP_257122938.1 | YaiO family outer membrane beta-barrel protein | - |
| A7A19_RS24995 (26708) | 26708..27061 | + | 354 | WP_257122939.1 | hypothetical protein | - |
| A7A19_RS25000 (27882) | 27882..27977 | + | 96 | Protein_32 | transposase | - |
| A7A19_RS25005 (27967) | 27967..28194 | + | 228 | WP_257122960.1 | IS66 family transposase ISEc23 | Transposase |
| A7A19_RS25010 (28203) | 28203..28841 | - | 639 | WP_257122940.1 | ParB/RepB/Spo0J family partition protein | - |
| A7A19_RS25015 (28826) | 28826..30058 | - | 1233 | WP_257122954.1 | phosphoadenosine phosphosulfate reductase | - |
| A7A19_RS25020 (30666) | 30666..31706 | - | 1041 | WP_257122941.1 | hypothetical protein | - |
| A7A19_RS25025 (32171) | 32171..32413 | + | 243 | WP_096934556.1 | hypothetical protein | - |
| A7A19_RS25030 (32652) | 32652..33594 | - | 943 | Protein_38 | Tn3 family transposase | - |
| A7A19_RS25035 (33896) | 33896..33958 | - | 63 | Protein_39 | transcriptional regulator | - |
| A7A19_RS25040 (34080) | 34080..35519 | - | 1440 | WP_257122942.1 | Hemolysin secretion protein D, plasmid | VF |
| A7A19_RS25045 (35523) | 35523..37643 | - | 2121 | WP_257122955.1 | Alpha-hemolysin translocation ATP-binding protein HlyB | VF |
| A7A19_RS25050 (37693) | 37693..40689 | - | 2997 | WP_257122943.1 | Hemolysin, chromosomal | VF |
| A7A19_RS25055 (40691) | 40691..41206 | - | 516 | WP_257122944.1 | Hemolysin-activating lysine-acyltransferase HlyC | VF |
| A7A19_RS25060 (41833) | 41833..42213 | + | 381 | Protein_44 | IS110 family transposase ISEc66 | Transposase |
| A7A19_RS25065 (42243) | 42243..43814 | - | 1572 | WP_257122945.1 | IS66 family transposase ISCro1 | Transposase |
| A7A19_RS25070 (43834) | 43834..44181 | - | 348 | WP_257122946.1 | IS66 family transposase ISCro1 | Transposase |
| A7A19_RS25075 (44181) | 44181..44858 | - | 678 | WP_257122947.1 | IS66 family transposase ISCro1 | Transposase |
| A7A19_RS25080 (44910) | 44910..45209 | - | 300 | Protein_48 | IS21 family transposase IS21 | Transposase |
| A7A19_RS25085 (45343) | 45343..45747 | + | 405 | Protein_49 | IS66 family transposase ISEc8 | Transposase |
| A7A19_RS25090 (45792) | 45792..45926 | + | 135 | WP_225381043.1 | colicin release lysis protein | - |
| A7A19_RS25095 (46454) | 46454..46690 | + | 237 | WP_032257624.1 | colicin V immunity protein | - |
| A7A19_RS25100 (46668) | 46668..46979 | + | 312 | WP_001259758.1 | colicin V | - |
| A7A19_RS25105 (47149) | 47149..49245 | - | 2097 | WP_257122948.1 | peptidase domain-containing ABC transporter | - |
| A7A19_RS25110 (49238) | 49238..50512 | - | 1275 | WP_257115038.1 | HlyD family secretion protein | - |
| A7A19_RS25115 (51192) | 51192..51886 | + | 695 | WP_257122754.1 | IS1 family transposase | - |
| A7A19_RS25120 (52442) | 52442..56347 | + | 3906 | WP_257122949.1 | Serine protease EspP | VF |
| A7A19_RS25125 (56510) | 56510..56719 | - | 210 | WP_257122950.1 | hypothetical protein | - |
| A7A19_RS25130 (56853) | 56853..57071 | + | 219 | Protein_58 | hypothetical protein | - |
| A7A19_RS25140 (58346) | 58346..59890 | - | 1545 | Protein_60 | Tn3 family transposase ISPsy42 | Transposase |
| A7A19_RS25145 (60040) | 60040..60618 | + | 579 | WP_001400936.1 | Tn3 family transposase ISPsy39 | Transposase |
| A7A19_RS25150 (60611) | 60611..60823 | + | 213 | WP_257122952.1 | arylsulfatase regulator | - |
| A7A19_RS25155 (61042) | 61042..61197 | + | 156 | Protein_63 | IS110 family transposase | - |
| A7A19_RS25160 (61593) | 61593..61844 | - | 252 | WP_001315600.1 | HTH domain-containing protein | - |
| A7A19_RS25165 (62281) | 62281..64458 | - | 2178 | WP_257115034.1 | Toxin RTX-I translocation ATP-binding protein | VF |
| A7A19_RS25170 (64458) | 64458..65711 | - | 1254 | WP_257115056.1 | HlyD family secretion protein | - |
| A7A19_RS25175 (65795) | 65795..66403 | - | 609 | WP_257115035.1 | type II CAAX endopeptidase family protein | - |
| A7A19_RS25180 (66643) | 66643..67008 | - | 366 | WP_220393360.1 | hypothetical protein | - |
| A7A19_RS25185 (67141) | 67141..67794 | - | 654 | WP_257115036.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| A7A19_RS25190 (67935) | 67935..70913 | + | 2979 | WP_257122953.1 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| A7A19_RS25195 (71514) | 71514..72788 | + | 1275 | WP_257115038.1 | HlyD family secretion protein | - |
| A7A19_RS25200 (72781) | 72781..74877 | + | 2097 | WP_257122948.1 | peptidase domain-containing ABC transporter | - |
| A7A19_RS25205 (75047) | 75047..75358 | - | 312 | WP_001259758.1 | colicin V | - |
| A7A19_RS25210 (75336) | 75336..75572 | - | 237 | WP_032257624.1 | colicin V immunity protein | - |
| A7A19_RS25215 (76100) | 76100..76234 | - | 135 | WP_225381043.1 | colicin release lysis protein | - |
| A7A19_RS25220 (76279) | 76279..76812 | - | 534 | Protein_76 | IS66 family transposase ISEc8 | Transposase |
| A7A19_RS25225 (77026) | 77026..78239 | + | 1214 | WP_162829241.1 | IS3 family transposase IS629 | Transposase |
| A7A19_RS25230 (78331) | 78331..79232 | - | 902 | Protein_78 | DUF4158 domain-containing protein | - |
| A7A19_RS25235 (79882) | 79882..80376 | - | 495 | Protein_79 | IS21 family transposase | - |
| A7A19_RS25240 (81083) | 81083..81490 | + | 408 | WP_257115029.1 | hypothetical protein | - |
| A7A19_RS25245 (81496) | 81496..82086 | + | 591 | WP_257122909.1 | hypothetical protein | - |
| A7A19_RS25250 (82238) | 82238..82771 | + | 534 | WP_257115027.1 | putative major fimbrial subunit LpfA | VF |
| A7A19_RS25255 (82831) | 82831..83508 | + | 678 | WP_257122910.1 | Chaperone protein FimC | VF |
| A7A19_RS25260 (83462) | 83462..86041 | + | 2580 | WP_257115025.1 | Outer membrane usher protein YraJ | VF |
| A7A19_RS25265 (86647) | 86647..87621 | + | 975 | WP_257115024.1 | fimbrial protein | - |
| A7A19_RS25270 (87902) | 87902..90538 | + | 2637 | Protein_86 | Tn3 family transposase TnpA_Tn3 | Transposase |
| A7A19_RS25275 (91059) | 91059..91316 | + | 258 | WP_257115022.1 | biofilm development regulator YmgB/AriR family protein | - |
| A7A19_RS25280 (91395) | 91395..91661 | - | 267 | Protein_88 | IS1 family transposase | - |
| A7A19_RS25285 (91842) | 91842..92567 | - | 726 | Protein_89 | IS3 family transposase ISSd1 | Transposase |
| A7A19_RS25290 (92622) | 92622..93835 | + | 1214 | WP_162829241.1 | IS3 family transposase IS629 | Transposase |
| A7A19_RS25295 (93879) | 93879..94052 | - | 174 | Protein_91 | IS3 family transposase ISSfl10 | Transposase |
| A7A19_RS25300 (94059) | 94059..95210 | - | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| A7A19_RS25305 (95395) | 95395..95523 | - | 129 | WP_257115021.1 | transposase | - |
| A7A19_RS25310 (95568) | 95568..97642 | + | 2075 | Protein_94 | Tn3 family transposase | - |
| A7A19_RS25315 (97677) | 97677..97920 | + | 244 | Protein_95 | IS3 family transposase IS911 | Transposase |
| A7A19_RS25320 (98146) | 98146..99267 | - | 1122 | WP_257115020.1 | N-acetyl-alpha-D-glucosaminyl L-malate synthase | VF |
| A7A19_RS25325 (99431) | 99431..99778 | - | 348 | WP_257115019.1 | anti-adapter protein IraM | - |
| A7A19_RS25330 (100182) | 100182..101093 | + | 912 | WP_257115018.1 | VirK/YbjX family protein | - |
| A7A19_RS25335 (101419) | 101419..101754 | + | 336 | WP_257122911.1 | SMR family transporter | - |
| A7A19_RS25340 (101765) | 101765..103102 | - | 1338 | WP_257122912.1 | MFS transporter | - |
| A7A19_RS25345 (104562) | 104562..105392 | + | 831 | WP_257122913.1 | polysaccharide deacetylase family protein | - |
| A7A19_RS25350 (105459) | 105459..105810 | - | 352 | Protein_102 | Tn3 family transposase | - |
| A7A19_RS25355 (105836) | 105836..107049 | + | 1214 | WP_162829241.1 | IS3 family transposase IS629 | Transposase |
| A7A19_RS25360 (107093) | 107093..108037 | + | 945 | Protein_104 | conjugal transfer protein TraH | - |
| A7A19_RS25365 (108034) | 108034..110856 | + | 2823 | WP_257122914.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| A7A19_RS25370 (110878) | 110878..111357 | + | 480 | WP_032305019.1 | surface exclusion protein | - |
| A7A19_RS25375 (111424) | 111424..112137 | + | 714 | WP_257122956.1 | conjugal transfer complement resistance protein TraT | - |
| A7A19_RS25380 (112197) | 112197..112457 | + | 261 | WP_001077900.1 | hypothetical protein | - |
| A7A19_RS25385 (112625) | 112625..113356 | + | 732 | WP_257122915.1 | hypothetical protein | - |
| A7A19_RS25390 (113412) | 113412..115565 | + | 2154 | WP_257122917.1 | type IV conjugative transfer system coupling protein TraD | - |
| A7A19_RS25395 (115565) | 115565..120835 | + | 5271 | WP_257122918.1 | Multifunctional conjugation protein TraI | Relaxase |
| A7A19_RS25400 (120855) | 120855..121601 | + | 747 | WP_257122919.1 | conjugal transfer pilus acetylase TraX | - |
| A7A19_RS25405 (121656) | 121656..122036 | + | 381 | Protein_113 | fertility inhibition protein FinO | - |
| A7A19_RS25415 (123344) | 123344..123529 | + | 186 | Protein_115 | ProQ/FINO family protein | - |
| A7A19_RS25420 (123660) | 123660..123872 | + | 213 | WP_257122920.1 | hypothetical protein | - |
| A7A19_RS25425 (124200) | 124200..124304 | + | 105 | Protein_117 | transcriptional regulator | - |
| A7A19_RS25430 (124384) | 124384..124809 | + | 426 | WP_257115045.1 | IS66 family transposase ISEc23 | Transposase |
| A7A19_RS25435 (124806) | 124806..125156 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| A7A19_RS25440 (125187) | 125187..126800 | + | 1614 | WP_257122655.1 | IS66 family transposase ISEc23 | Transposase |
| A7A19_RS25445 (126833) | 126833..126949 | + | 117 | Protein_121 | transcriptional regulator | - |
| A7A19_RS25450 (126987) | 126987..127577 | + | 591 | WP_257122922.1 | DUF2726 domain-containing protein | - |
| A7A19_RS25455 (127732) | 127732..128197 | + | 466 | Protein_123 | hypothetical protein | - |
| - (128349) | 128349..128405 | - | 57 | NuclAT_0 | - | Antitoxin Detail |
| - (128349) | 128349..128405 | - | 57 | NuclAT_0 | - | Antitoxin Detail |
| - (128349) | 128349..128405 | - | 57 | NuclAT_0 | - | Antitoxin Detail |
| - (128349) | 128349..128405 | - | 57 | NuclAT_0 | - | Antitoxin Detail |
| A7A19_RS25460 (128453) | 128453..128602 | + | 150 | WP_064758536.1 | Hok/Gef family protein | Toxin Detail |
| A7A19_RS25465 (128886) | 128886..129143 | + | 258 | WP_063101962.1 | replication regulatory protein RepA | - |
| A7A19_RS25470 (129160) | 129160..129414 | - | 255 | WP_236533440.1 | replication protein RepA | - |
| A7A19_RS25475 (129405) | 129405..129452 | + | 48 | WP_236533442.1 | hypothetical protein | - |
| A7A19_RS25480 (129445) | 129445..130467 | + | 1023 | WP_257122923.1 | plasmid replication initiator RepA | - |
| A7A19_RS25485 (131819) | 131819..132070 | + | 252 | WP_001315600.1 | HTH domain-containing protein | - |
| A7A19_RS25490 (132621) | 132621..133181 | - | 561 | WP_064181638.1 | pentapeptide repeat-containing protein | - |
| A7A19_RS25495 (133185) | 133185..133913 | - | 729 | WP_065809879.1 | ATP-binding cassette domain-containing protein | - |
| A7A19_RS25500 (133910) | 133910..134635 | - | 726 | WP_160521638.1 | protein mcbE | - |
| A7A19_RS25505 (134645) | 134645..135832 | - | 1188 | WP_257122924.1 | YcaO-like family protein | - |
| A7A19_RS25510 (135825) | 135825..136688 | - | 864 | WP_257122925.1 | SagB/ThcOx family dehydrogenase | - |
| A7A19_RS25515 (136650) | 136650..137863 | + | 1214 | WP_162829241.1 | IS3 family transposase IS629 | Transposase |
| A7A19_RS25520 (137866) | 137866..137955 | - | 90 | Protein_136 | IS30 family transposase IS30D | Transposase |
| A7A19_RS25525 (138235) | 138235..138414 | - | 180 | Protein_137 | IS3 family transposase | - |
| A7A19_RS25530 (138537) | 138537..138788 | + | 252 | WP_001132895.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| A7A19_RS25535 (138785) | 138785..139072 | + | 288 | WP_257122926.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| A7A19_RS25540 (139074) | 139074..139485 | + | 412 | Protein_140 | DDE-type integrase/transposase/recombinase | - |
| A7A19_RS25545 (140130) | 140130..141107 | + | 978 | WP_000361612.1 | RepB family plasmid replication initiator protein | - |
| A7A19_RS25550 (141392) | 141392..142132 | - | 741 | WP_257122927.1 | site-specific integrase | - |
| A7A19_RS25555 (142253) | 142253..142440 | - | 188 | Protein_143 | serine/threonine protein kinase | - |
| A7A19_RS25560 (142815) | 142815..143717 | - | 903 | WP_001312822.1 | hypothetical protein | VF |
| A7A19_RS25565 (143786) | 143786..144895 | - | 1110 | WP_000771475.1 | SDR family oxidoreductase | - |
| A7A19_RS25570 (145328) | 145328..146281 | - | 954 | WP_000280980.1 | Protease 7 | VF |
| A7A19_RS25575 (147533) | 147533..147933 | - | 401 | Protein_147 | integrase core domain-containing protein | - |
| A7A19_RS25580 (148007) | 148007..148264 | + | 258 | Protein_148 | IS3 family transposase IS911 | Transposase |
| A7A19_RS25585 (148332) | 148332..148541 | + | 210 | Protein_149 | IS30 family transposase IS30D | Transposase |
| A7A19_RS24840 (148596) | 148596..149690 | + | 1095 | WP_162829241.1 | IS3 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|