MGE detailed information
MGE type: Conjugative plasmid MGE length: 129935 bp
Accession: NZ_CP075666 Location: 1..129935 Organism: Escherichia coli strain STEC2018-553 Replicon: plasmid pSTEC2018_553-a
Accession: NZ_CP075666 Location: 1..129935 Organism: Escherichia coli strain STEC2018-553 Replicon: plasmid pSTEC2018_553-a
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFY30_RS27105 (JFY30_27105) | 1..873 | + | 873 | WP_000729440.1 | incFII family plasmid replication initiator RepA | - |
| JFY30_RS28940 | 1568..1759 | + | 192 | WP_033810767.1 | hypothetical protein | - |
| JFY30_RS27110 (JFY30_27110) | 1832..2083 | + | 252 | WP_001132900.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| JFY30_RS27115 (JFY30_27115) | 2080..2367 | + | 288 | WP_000222760.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| JFY30_RS27120 (JFY30_27120) | 2471..3061 | + | 591 | WP_000977350.1 | Serine acetyltransferase | VF |
| JFY30_RS27125 (JFY30_27125) | 3164..3820 | + | 657 | WP_000536048.1 | ProQ/FINO family protein | - |
| JFY30_RS27130 (JFY30_27130) | 3888..4202 | + | 315 | WP_000633742.1 | hypothetical protein | - |
| JFY30_RS27140 (JFY30_27140) | 4971..6152 | - | 1182 | Protein_7 | IS91 family transposase | - |
| JFY30_RS27145 (JFY30_27145) | 6640..7180 | - | 541 | Protein_8 | GntR family transcriptional regulator | - |
| JFY30_RS27150 (JFY30_27150) | 7626..8519 | + | 894 | WP_000123089.1 | N-acetylneuraminate lyase | - |
| JFY30_RS27155 (JFY30_27155) | 8600..10087 | + | 1488 | WP_001094644.1 | sialate:H+ symport family MFS transporter | - |
| JFY30_RS27160 (JFY30_27160) | 10111..10496 | + | 386 | Protein_11 | hypothetical protein | - |
| JFY30_RS27165 (JFY30_27165) | 10496..10600 | + | 105 | Protein_12 | ROK family protein | - |
| JFY30_RS27170 (JFY30_27170) | 10744..11457 | + | 714 | WP_024178317.1 | oligogalacturonate-specific porin KdgM family protein | - |
| JFY30_RS27175 (JFY30_27175) | 11477..12583 | + | 1107 | WP_001044131.1 | N-acetylneuraminate epimerase | - |
| JFY30_RS27180 (JFY30_27180) | 12630..12830 | - | 201 | Protein_15 | DNA-binding protein | - |
| JFY30_RS27185 (JFY30_27185) | 14023..14274 | + | 252 | WP_000121744.1 | hypothetical protein | Antitoxin Detail |
| JFY30_RS27190 (JFY30_27190) | 14264..14545 | + | 282 | WP_000220566.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| JFY30_RS27195 (JFY30_27195) | 14799..15986 | - | 1188 | WP_198779709.1 | IS91 family transposase ISEc37 | Transposase |
| JFY30_RS27200 (JFY30_27200) | 15986..16351 | - | 366 | WP_000091308.1 | hypothetical protein | - |
| JFY30_RS27205 (JFY30_27205) | 16559..16744 | - | 186 | WP_001368543.1 | hypothetical protein | - |
| JFY30_RS27210 (JFY30_27210) | 16985..17851 | - | 867 | WP_000589629.1 | DMT family transporter | - |
| JFY30_RS27215 (JFY30_27215) | 17844..18026 | - | 183 | WP_001368563.1 | hypothetical protein | - |
| JFY30_RS27220 (JFY30_27220) | 18066..18266 | - | 201 | WP_000762569.1 | hypothetical protein | - |
| JFY30_RS27225 (JFY30_27225) | 18424..18642 | + | 219 | Protein_24 | DUF6404 family protein | - |
| JFY30_RS27230 (JFY30_27230) | 18660..19250 | - | 591 | WP_062891001.1 | hypothetical protein | - |
| JFY30_RS27235 (JFY30_27235) | 19250..19507 | - | 258 | WP_000371887.1 | hypothetical protein | - |
| JFY30_RS27240 (JFY30_27240) | 19836..20288 | + | 453 | WP_000670961.1 | dTDP-3-amino-3,6-dideoxy-alpha-D-galactopyranose 3-N-acetyltransferase | VF |
| JFY30_RS27245 (JFY30_27245) | 20321..21853 | - | 1533 | WP_032308905.1 | NAD(P)-binding domain-containing protein | - |
| JFY30_RS27250 (JFY30_27250) | 21850..22119 | - | 270 | WP_000379710.1 | SemiSWEET transporter | - |
| JFY30_RS27255 (JFY30_27255) | 22121..23137 | - | 1017 | WP_000583427.1 | Gfo/Idh/MocA family oxidoreductase | - |
| JFY30_RS27260 (JFY30_27260) | 23137..23967 | - | 831 | WP_016230897.1 | HAD-IIB family hydrolase | - |
| JFY30_RS27265 (JFY30_27265) | 23951..25177 | - | 1227 | WP_000655924.1 | 3-oxo-glucose-6-phosphate:glutamate aminotransferase | VF |
| JFY30_RS27270 (JFY30_27270) | 26036..26254 | + | 219 | WP_000813639.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| JFY30_RS27275 (JFY30_27275) | 26256..26561 | + | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| JFY30_RS27280 (JFY30_27280) | 26562..27368 | + | 807 | WP_000016973.1 | site-specific integrase | - |
| JFY30_RS27285 (JFY30_27285) | 27548..28192 | + | 645 | WP_001144036.1 | ParA family protein | - |
| JFY30_RS27290 (JFY30_27290) | 28279..28587 | + | 309 | WP_000030204.1 | molecular chaperone GroEL | - |
| JFY30_RS27295 (JFY30_27295) | 28999..29979 | + | 981 | WP_000688509.1 | plasmid segregation protein ParM | - |
| JFY30_RS27300 (JFY30_27300) | 29972..30388 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| JFY30_RS27305 (JFY30_27305) | 30390..31664 | - | 1275 | WP_000457488.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| JFY30_RS27310 (JFY30_27310) | 31664..32101 | - | 438 | WP_000109062.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| JFY30_RS27315 (JFY30_27315) | 32098..32346 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| JFY30_RS28945 | 32630..32941 | + | 312 | WP_032320643.1 | hypothetical protein | - |
| JFY30_RS27320 (JFY30_27320) | 33051..33953 | + | 903 | WP_077775375.1 | DUF1281 domain-containing protein | - |
| JFY30_RS27325 (JFY30_27325) | 33957..34262 | + | 306 | WP_032236829.1 | hypothetical protein | - |
| JFY30_RS27330 (JFY30_27330) | 34339..35022 | + | 684 | WP_000086113.1 | DNA methylase | - |
| JFY30_RS27335 (JFY30_27335) | 35023..35244 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| JFY30_RS27340 (JFY30_27340) | 35225..35692 | + | 468 | WP_225394947.1 | DUF1380 family protein | - |
| JFY30_RS27345 (JFY30_27345) | 35737..36507 | + | 771 | WP_001006245.1 | hypothetical protein | - |
| JFY30_RS27350 (JFY30_27350) | 36923..37348 | + | 426 | WP_001198915.1 | antirestriction protein | - |
| JFY30_RS27355 (JFY30_27355) | 37395..37814 | + | 420 | WP_000271712.1 | DUF1380 family protein | - |
| JFY30_RS27360 (JFY30_27360) | 37814..38005 | + | 192 | WP_198779697.1 | hypothetical protein | - |
| JFY30_RS27365 (JFY30_27365) | 38020..38322 | + | 303 | WP_097498621.1 | hypothetical protein | - |
| JFY30_RS27375 (JFY30_27375) | 38760..39287 | + | 528 | WP_033885676.1 | single-stranded DNA-binding protein | - |
| JFY30_RS27380 (JFY30_27380) | 39345..39578 | + | 234 | WP_021564200.1 | DUF905 family protein | - |
| JFY30_RS27385 (JFY30_27385) | 39644..41602 | + | 1959 | WP_033806435.1 | ParB/RepB/Spo0J family partition protein | - |
| JFY30_RS27390 (JFY30_27390) | 41657..42091 | + | 435 | WP_000845900.1 | conjugation system SOS inhibitor PsiB | - |
| JFY30_RS27395 (JFY30_27395) | 42088..42807 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| JFY30_RS27400 (JFY30_27400) | 42804..43400 | + | 597 | WP_000978007.1 | hypothetical protein | - |
| JFY30_RS27405 (JFY30_27405) | 43865..44365 | + | 501 | WP_000117633.1 | antirestriction protein ArdA | - |
| JFY30_RS27410 (JFY30_27410) | 44677..44745 | - | 69 | Protein_61 | pilus protein | - |
| JFY30_RS28950 | 45088..45521 | + | 434 | Protein_62 | post-segregation killing protein PndC | - |
| JFY30_RS27420 (JFY30_27420) | 45616..45881 | + | 266 | Protein_63 | hypothetical protein | - |
| JFY30_RS27425 (JFY30_27425) | 45946..46893 | + | 948 | Protein_64 | Rpn family recombination-promoting nuclease/putative transposase | - |
| JFY30_RS27430 (JFY30_27430) | 47195..48381 | - | 1187 | Protein_65 | IS91 family transposase ISEc37 | Transposase |
| JFY30_RS27435 (JFY30_27435) | 48381..48743 | - | 363 | WP_215744934.1 | hypothetical protein | - |
| JFY30_RS27440 (JFY30_27440) | 48834..49367 | + | 534 | Protein_67 | IS3 family transposase ISLad1 | Transposase |
| JFY30_RS27445 (JFY30_27445) | 49780..51282 | + | 1503 | WP_000715083.1 | hypothetical protein | - |
| JFY30_RS29120 | 52068..52163 | + | 96 | WP_000609147.1 | DinQ-like type I toxin DqlB | - |
| JFY30_RS27450 (JFY30_27450) | 52556..52858 | + | 303 | WP_097498621.1 | hypothetical protein | - |
| JFY30_RS27455 (JFY30_27455) | 52858..52926 | - | 69 | Protein_71 | pilus protein | - |
| JFY30_RS27460 (JFY30_27460) | 53278..53712 | + | 435 | WP_000218857.1 | hypothetical protein | - |
| JFY30_RS27465 (JFY30_27465) | 53806..54072 | + | 267 | WP_001247860.1 | hypothetical protein | - |
| JFY30_RS27470 (JFY30_27470) | 54137..55015 | + | 879 | WP_001532089.1 | Recombination-promoting nuclease RpnA | VF |
| JFY30_RS27475 (JFY30_27475) | 55077..55283 | + | 207 | WP_001532090.1 | hypothetical protein | VF |
| JFY30_RS27480 (JFY30_27480) | 55314..55565 | - | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| JFY30_RS27485 (JFY30_27485) | 56144..56992 | + | 849 | WP_001077057.1 | DUF4942 domain-containing protein | - |
| JFY30_RS27490 (JFY30_27490) | 57077..57412 | - | 336 | WP_000157099.1 | hypothetical protein | - |
| JFY30_RS27495 (JFY30_27495) | 57645..57977 | + | 333 | WP_001291058.1 | plasmid mobilization protein MobA | - |
| JFY30_RS27500 (JFY30_27500) | 57989..60700 | + | 2712 | WP_198789109.1 | Protein TraI | Relaxase |
| JFY30_RS27505 (JFY30_27505) | 60768..61199 | + | 432 | WP_198779667.1 | cell envelope integrity TolA C-terminal domain-containing protein | - |
| JFY30_RS27510 (JFY30_27510) | 61445..63493 | - | 2049 | WP_000792546.1 | TonB-dependent siderophore receptor IreA | - |
| JFY30_RS27515 (JFY30_27515) | 64095..65323 | + | 1229 | WP_169073214.1 | IS3 family transposase IS2 | Transposase |
| JFY30_RS27520 (JFY30_27520) | 65542..65784 | - | 243 | WP_071525627.1 | hypothetical protein | - |
| JFY30_RS27525 (JFY30_27525) | 66251..68554 | - | 2304 | WP_000077651.1 | F-type conjugative transfer protein TrbC | - |
| JFY30_RS27530 (JFY30_27530) | 68535..69653 | - | 1119 | WP_000155610.1 | DsbC family protein | - |
| JFY30_RS27535 (JFY30_27535) | 69650..70966 | - | 1317 | WP_000121925.1 | IncI1-type conjugal transfer protein TrbA | - |
| JFY30_RS29125 | 71511..71606 | + | 96 | WP_001443691.1 | DinQ-like type I toxin DqlB | - |
| JFY30_RS29130 | 72257..72352 | + | 96 | WP_000609151.1 | DinQ-like type I toxin DqlB | - |
| JFY30_RS27540 (JFY30_27540) | 72498..72821 | - | 324 | WP_000323308.1 | hypothetical protein | - |
| JFY30_RS27545 (JFY30_27545) | 72855..73046 | - | 192 | WP_000264910.1 | hypothetical protein | - |
| JFY30_RS27550 (JFY30_27550) | 73056..73421 | - | 366 | WP_001532099.1 | hypothetical protein | - |
| JFY30_RS27555 (JFY30_27555) | 73432..73623 | - | 192 | WP_000789656.1 | hypothetical protein | - |
| JFY30_RS27560 (JFY30_27560) | 74065..74438 | - | 374 | Protein_94 | thermonuclease family protein | - |
| JFY30_RS27565 (JFY30_27565) | 74587..75210 | + | 624 | WP_001158019.1 | hypothetical protein | - |
| JFY30_RS27570 (JFY30_27570) | 75298..75753 | + | 456 | WP_001205141.1 | DUF2569 family protein | - |
| JFY30_RS27575 (JFY30_27575) | 75953..77488 | + | 1536 | WP_001368510.1 | phosphoethanolamine transferase | - |
| JFY30_RS27580 (JFY30_27580) | 77581..77823 | - | 243 | WP_000064387.1 | hypothetical protein | - |
| JFY30_RS27585 (JFY30_27585) | 78156..78308 | + | 153 | WP_001367784.1 | Hok/Gef family protein | - |
| JFY30_RS27590 (JFY30_27590) | 78361..78543 | - | 183 | WP_021580031.1 | hypothetical protein | - |
| JFY30_RS27595 (JFY30_27595) | 78877..79029 | + | 153 | WP_215744935.1 | Hok/Gef family protein | - |
| JFY30_RS27600 (JFY30_27600) | 79082..79264 | - | 183 | WP_021580031.1 | hypothetical protein | - |
| JFY30_RS27605 (JFY30_27605) | 79597..79749 | + | 153 | WP_001367784.1 | Hok/Gef family protein | - |
| JFY30_RS28955 | 80064..80195 | - | 132 | Protein_104 | ethanolamine utilization protein EutE | - |
| JFY30_RS27615 (JFY30_27615) | 80290..80499 | + | 210 | WP_000062946.1 | HEAT repeat domain-containing protein | - |
| JFY30_RS27620 (JFY30_27620) | 80564..81211 | - | 648 | WP_198789082.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| JFY30_RS27625 (JFY30_27625) | 81299..83458 | - | 2160 | WP_198779627.1 | DotA/TraY family protein | - |
| JFY30_RS27630 (JFY30_27630) | 83531..84100 | - | 570 | WP_032309084.1 | conjugal transfer protein TraX | - |
| JFY30_RS27635 (JFY30_27635) | 84097..85302 | - | 1206 | WP_032309085.1 | conjugal transfer protein TraW | - |
| JFY30_RS27640 (JFY30_27640) | 85260..85880 | - | 621 | WP_000286858.1 | hypothetical protein | - |
| JFY30_RS27645 (JFY30_27645) | 85880..88924 | - | 3045 | WP_001024758.1 | conjugal transfer protein | - |
| JFY30_RS27650 (JFY30_27650) | 89149..89694 | + | 546 | WP_001368500.1 | hypothetical protein | - |
| JFY30_RS27655 (JFY30_27655) | 89667..90050 | - | 384 | WP_001368491.1 | hypothetical protein | - |
| JFY30_RS27660 (JFY30_27660) | 90047..90406 | - | 360 | WP_000380400.1 | hypothetical protein | - |
| JFY30_RS27665 (JFY30_27665) | 90461..91279 | - | 819 | WP_072095383.1 | conjugal transfer protein TraT | - |
| JFY30_RS29135 (JFY30_27670) | 91194..91445 | - | 252 | WP_001277575.1 | hypothetical protein | - |
| JFY30_RS27675 (JFY30_27675) | 91502..91900 | - | 399 | WP_000086067.1 | hypothetical protein | - |
| JFY30_RS27680 (JFY30_27680) | 91947..92477 | - | 531 | WP_000987022.1 | conjugal transfer protein TraQ | - |
| JFY30_RS27685 (JFY30_27685) | 92474..93187 | - | 714 | WP_198779628.1 | conjugal transfer protein TraP | - |
| JFY30_RS27690 (JFY30_27690) | 93184..94515 | - | 1332 | WP_097437979.1 | conjugal transfer protein TraO | - |
| JFY30_RS27695 (JFY30_27695) | 94519..95493 | - | 975 | WP_001165561.1 | hypothetical protein | VF |
| JFY30_RS27700 (JFY30_27700) | 95504..96199 | - | 696 | WP_001287263.1 | DotI/IcmL family type IV secretion protein | - |
| JFY30_RS27705 (JFY30_27705) | 96211..96561 | - | 351 | WP_001056369.1 | hypothetical protein | - |
| JFY30_RS27710 (JFY30_27710) | 96578..100609 | - | 4032 | WP_033810770.1 | DUF5710 domain-containing protein | - |
| JFY30_RS27715 (JFY30_27715) | 100673..100963 | - | 291 | WP_000817799.1 | hypothetical protein | - |
| JFY30_RS27720 (JFY30_27720) | 100960..102108 | - | 1149 | WP_000625249.1 | putative protein YggR | VF |
| JFY30_RS27725 (JFY30_27725) | 102092..102928 | - | 837 | WP_000848138.1 | hypothetical protein | VF |
| JFY30_RS27730 (JFY30_27730) | 102925..103377 | - | 453 | WP_001081199.1 | DotD/TraH family lipoprotein | - |
| JFY30_RS27735 (JFY30_27735) | 103426..103596 | - | 171 | WP_000482367.1 | hypothetical protein | - |
| JFY30_RS27740 (JFY30_27740) | 103736..104938 | - | 1203 | WP_000979990.1 | conjugal transfer protein TraF | - |
| JFY30_RS27745 (JFY30_27745) | 105042..105863 | - | 822 | WP_032211042.1 | hypothetical protein | - |
| JFY30_RS27750 (JFY30_27750) | 106125..106346 | + | 222 | WP_231232698.1 | toxin ArtA | - |
| JFY30_RS27755 (JFY30_27755) | 106891..107181 | - | 291 | WP_000681898.1 | hypothetical protein | - |
| JFY30_RS27760 (JFY30_27760) | 107223..108392 | - | 1170 | WP_215744936.1 | site-specific integrase | - |
| JFY30_RS27765 (JFY30_27765) | 108719..110092 | - | 1374 | WP_032211040.1 | hypothetical protein | VF |
| JFY30_RS27770 (JFY30_27770) | 110089..110796 | - | 708 | WP_001114349.1 | A24 family peptidase | - |
| JFY30_RS27775 (JFY30_27775) | 110756..111238 | - | 483 | WP_000871564.1 | hypothetical protein | VF |
| JFY30_RS27780 (JFY30_27780) | 111286..111822 | - | 537 | WP_001011500.1 | type 4 pilus major pilin | - |
| JFY30_RS27785 (JFY30_27785) | 111988..112368 | + | 381 | WP_001171530.1 | IS66 family transposase ISEc8 | Transposase |
| JFY30_RS27790 (JFY30_27790) | 112365..112712 | + | 348 | WP_000612589.1 | IS66 family transposase ISEc8 | Transposase |
| JFY30_RS27795 (JFY30_27795) | 112762..114300 | + | 1539 | WP_000998048.1 | IS66 family transposase ISEc8 | Transposase |
| JFY30_RS27800 (JFY30_27800) | 114311..115420 | - | 1110 | WP_215744937.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| JFY30_RS27805 (JFY30_27805) | 115422..116930 | - | 1509 | WP_000893939.1 | Type II secretion system protein E | VF |
| JFY30_RS27810 (JFY30_27810) | 117027..117623 | - | 597 | WP_062872315.1 | hypothetical protein | - |
| JFY30_RS27815 (JFY30_27815) | 117719..118273 | - | 555 | WP_001026779.1 | hypothetical protein | - |
| JFY30_RS27820 (JFY30_27820) | 118322..118774 | - | 453 | WP_001532123.1 | hypothetical protein | VF |
| JFY30_RS27825 (JFY30_27825) | 118764..120059 | - | 1296 | WP_000129881.1 | type 4b pilus protein PilO2 | - |
| JFY30_RS27830 (JFY30_27830) | 120080..121699 | - | 1620 | WP_001034996.1 | Outer membrane lipoprotein BfpB | VF |
| JFY30_RS27835 (JFY30_27835) | 121730..122167 | - | 438 | WP_000539686.1 | type IV pilus biogenesis protein PilM | - |
| JFY30_RS27840 (JFY30_27840) | 122172..123239 | - | 1068 | WP_198779641.1 | hypothetical protein | VF |
| JFY30_RS27845 (JFY30_27845) | 123356..123781 | + | 426 | WP_225276405.1 | hypothetical protein | - |
| JFY30_RS27850 (JFY30_27850) | 123774..124661 | - | 888 | WP_062872313.1 | hypothetical protein | - |
| JFY30_RS27855 (JFY30_27855) | 124855..125097 | - | 243 | WP_001271734.1 | PilI type IV pilus biogenesis protein | - |
| JFY30_RS27860 (JFY30_27860) | 125178..126872 | - | 1695 | WP_001532126.1 | flotillin family protein | - |
| JFY30_RS27865 (JFY30_27865) | 126899..127519 | - | 621 | WP_000176497.1 | DUF1449 family protein | - |
| JFY30_RS27870 (JFY30_27870) | 127786..128451 | - | 666 | WP_000154146.1 | hypothetical protein | - |
| JFY30_RS27875 (JFY30_27875) | 128592..129233 | - | 642 | WP_077786700.1 | transcription termination factor NusG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|