MGE detailed information
MGE type: Prophage MGE length: 76174 bp
Accession: NZ_CP075472 Location: 3593282..3669455 Organism: Escherichia coli strain NT1F25 Replicon: chromosome
Accession: NZ_CP075472 Location: 3593282..3669455 Organism: Escherichia coli strain NT1F25 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IGI24_RS18290 (3589110) | 3589110..3589862 | - | 753 | WP_077264745.1 | ABC transporter permease | - |
| IGI24_RS18295 (3589975) | 3589975..3590913 | - | 939 | WP_032663235.1 | glycosyltransferase family 2 protein | - |
| IGI24_RS18300 (3590918) | 3590918..3591466 | - | 549 | WP_048223992.1 | dTDP-4-dehydrorhamnose 3,5-epimerase | - |
| IGI24_RS18305 (3591482) | 3591482..3592372 | - | 891 | WP_032663233.1 | dTDP-4-dehydrorhamnose reductase | - |
| IGI24_RS18310 (3592396) | 3592396..3593268 | - | 873 | WP_032664078.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| IGI24_RS18315 (3593282) | 3593282..3594370 | - | 1089 | WP_032663232.1 | GDP-L-fucose synthase | VF |
| IGI24_RS18320 (3594820) | 3594820..3595524 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| IGI24_RS18325 (3595587) | 3595587..3595919 | + | 333 | Protein_3487 | tail fiber assembly protein | - |
| IGI24_RS18330 (3595891) | 3595891..3596319 | - | 429 | WP_021547348.1 | tail fiber assembly protein | - |
| IGI24_RS18335 (3596321) | 3596321..3596905 | - | 585 | WP_193125217.1 | hypothetical protein | - |
| IGI24_RS18340 (3596909) | 3596909..3597493 | - | 585 | WP_001583217.1 | YmfQ family protein | - |
| IGI24_RS18345 (3597484) | 3597484..3598542 | - | 1059 | WP_001583215.1 | baseplate J/gp47 family protein | - |
| IGI24_RS18350 (3598529) | 3598529..3598954 | - | 426 | WP_000424732.1 | phage GP46 family protein | - |
| IGI24_RS18355 (3598954) | 3598954..3599502 | - | 549 | WP_053271482.1 | phage baseplate assembly protein V | - |
| IGI24_RS18360 (3599502) | 3599502..3600581 | - | 1080 | WP_001560828.1 | phage tail protein | - |
| IGI24_RS18365 (3600578) | 3600578..3601906 | - | 1329 | WP_193125218.1 | DNA circularization N-terminal domain-containing protein | - |
| IGI24_RS18370 (3601968) | 3601968..3602498 | - | 531 | WP_001560827.1 | hypothetical protein | - |
| IGI24_RS18375 (3602590) | 3602590..3604422 | - | 1833 | WP_053271484.1 | phage tail tape measure protein | - |
| IGI24_RS18380 (3604564) | 3604564..3604833 | - | 270 | WP_000661054.1 | phage tail assembly protein | - |
| IGI24_RS18385 (3604833) | 3604833..3605189 | - | 357 | WP_000090997.1 | phage tail tube protein | - |
| IGI24_RS18390 (3605189) | 3605189..3606685 | - | 1497 | WP_001764254.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| IGI24_RS18395 (3606669) | 3606669..3606839 | - | 171 | WP_000497753.1 | DUF2635 domain-containing protein | - |
| IGI24_RS18400 (3606848) | 3606848..3607408 | - | 561 | WP_000779292.1 | hypothetical protein | - |
| IGI24_RS18405 (3607405) | 3607405..3607911 | - | 507 | WP_000224835.1 | hypothetical protein | - |
| IGI24_RS18410 (3607886) | 3607886..3608296 | - | 411 | WP_000702401.1 | phage head closure protein | - |
| IGI24_RS18415 (3608293) | 3608293..3608616 | - | 324 | WP_000927711.1 | head-tail connector protein | - |
| IGI24_RS18420 (3608619) | 3608619..3608819 | - | 201 | WP_000601360.1 | hypothetical protein | - |
| IGI24_RS18425 (3608869) | 3608869..3610074 | - | 1206 | WP_000257506.1 | phage major capsid protein | - |
| IGI24_RS18430 (3610089) | 3610089..3610739 | - | 651 | WP_001442257.1 | HK97 family phage prohead protease | - |
| IGI24_RS18435 (3610717) | 3610717..3611958 | - | 1242 | WP_000466250.1 | phage portal protein | - |
| IGI24_RS18440 (3611958) | 3611958..3612140 | - | 183 | WP_000605605.1 | protein YmfR | - |
| IGI24_RS18445 (3612152) | 3612152..3613885 | - | 1734 | WP_000088153.1 | terminase large subunit | - |
| IGI24_RS18450 (3613882) | 3613882..3614376 | - | 495 | WP_000929184.1 | phage terminase small subunit P27 family | - |
| IGI24_RS18455 (3614502) | 3614502..3614852 | - | 351 | WP_072686553.1 | HNH endonuclease | - |
| IGI24_RS18460 (3614960) | 3614960..3615469 | - | 510 | WP_016236634.1 | hypothetical protein | - |
| IGI24_RS23450 (3615536) | 3615536..3615787 | - | 252 | WP_225899315.1 | peptidase | - |
| IGI24_RS18465 (3615672) | 3615672..3616064 | - | 393 | WP_016236633.1 | DUF2570 domain-containing protein | - |
| IGI24_RS18470 (3616048) | 3616048..3616524 | - | 477 | WP_001197773.1 | glycoside hydrolase family protein | - |
| IGI24_RS18475 (3616528) | 3616528..3616854 | - | 327 | WP_001120496.1 | phage holin, lambda family | - |
| IGI24_RS18480 (3617130) | 3617130..3617951 | + | 822 | WP_016236632.1 | hypothetical protein | - |
| IGI24_RS18485 (3617976) | 3617976..3618458 | + | 483 | WP_016236631.1 | hypothetical protein | - |
| IGI24_RS18490 (3618487) | 3618487..3618834 | - | 348 | WP_016236630.1 | antiterminator Q family protein | - |
| IGI24_RS18495 (3618852) | 3618852..3619841 | - | 990 | WP_016236629.1 | DUF968 domain-containing protein | - |
| IGI24_RS18500 (3619849) | 3619849..3620646 | - | 798 | WP_001061403.1 | KilA-N domain-containing protein | - |
| IGI24_RS18505 (3620666) | 3620666..3621055 | - | 390 | WP_059259773.1 | RusA family crossover junction endodeoxyribonuclease | - |
| IGI24_RS18510 (3621052) | 3621052..3621378 | - | 327 | WP_000210164.1 | LexA family transcriptional regulator | - |
| IGI24_RS18515 (3621378) | 3621378..3621872 | - | 495 | WP_016236627.1 | PerC family transcriptional regulator | - |
| IGI24_RS18520 (3621869) | 3621869..3622810 | - | 942 | WP_193125219.1 | helix-turn-helix domain-containing protein | - |
| IGI24_RS18525 (3622800) | 3622800..3622979 | - | 180 | WP_001250269.1 | DUF4222 domain-containing protein | - |
| IGI24_RS18530 (3623155) | 3623155..3623706 | - | 552 | WP_000515868.1 | protein YmfL | - |
| IGI24_RS18535 (3623750) | 3623750..3623950 | - | 201 | WP_000649480.1 | YdaS family helix-turn-helix protein | - |
| IGI24_RS18540 (3624041) | 3624041..3624715 | + | 675 | WP_000848748.1 | LexA family transcriptional repressor | - |
| IGI24_RS18545 (3624950) | 3624950..3625156 | + | 207 | WP_000549626.1 | hypothetical protein | - |
| IGI24_RS18550 (3625128) | 3625128..3625562 | - | 435 | WP_000016389.1 | hypothetical protein | - |
| IGI24_RS23455 (3625706) | 3625706..3626025 | + | 320 | Protein_3534 | hypothetical protein | - |
| IGI24_RS18555 (3626107) | 3626107..3626643 | + | 537 | WP_000008235.1 | 5'-deoxynucleotidase | - |
| IGI24_RS18560 (3626634) | 3626634..3626996 | + | 363 | WP_032301943.1 | phage protein | - |
| IGI24_RS18565 (3626996) | 3626996..3627301 | + | 306 | WP_000627693.1 | protein YfdT | - |
| IGI24_RS23460 (3627301) | 3627301..3627651 | + | 351 | WP_000433939.1 | helix-turn-helix domain-containing protein | - |
| IGI24_RS18570 (3627573) | 3627573..3628691 | + | 1119 | WP_001132557.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| IGI24_RS18580 (3628896) | 3628896..3630149 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| IGI24_RS18585 (3630161) | 3630161..3631264 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| IGI24_RS18590 (3631552) | 3631552..3632607 | + | 1056 | WP_000749881.1 | phosphoporin PhoE | - |
| IGI24_RS18595 (3632646) | 3632646..3633047 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| - (3633765) | 3633765..3633845 | - | 81 | NuclAT_11 | - | - |
| - (3633765) | 3633765..3633845 | - | 81 | NuclAT_11 | - | - |
| - (3633765) | 3633765..3633845 | - | 81 | NuclAT_11 | - | - |
| - (3633765) | 3633765..3633845 | - | 81 | NuclAT_11 | - | - |
| IGI24_RS18600 (3633105) | 3633105..3634349 | - | 1245 | WP_000189541.1 | esterase FrsA | - |
| IGI24_RS18605 (3634441) | 3634441..3634899 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| IGI24_RS18610 (3635160) | 3635160..3636617 | + | 1458 | WP_001293003.1 | cytosol nonspecific dipeptidase | - |
| IGI24_RS18615 (3636674) | 3636674..3637195 | - | 522 | Protein_3547 | peptide chain release factor H | - |
| IGI24_RS18620 (3637194) | 3637194..3637397 | - | 204 | Protein_3548 | RtcB family protein | - |
| IGI24_RS18625 (3637643) | 3637643..3638095 | - | 453 | WP_001059847.1 | GNAT family N-acetyltransferase | - |
| IGI24_RS18630 (3638105) | 3638105..3638503 | - | 399 | WP_001263493.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| IGI24_RS18635 (3638506) | 3638506..3638799 | - | 294 | WP_000554757.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| IGI24_RS18640 (3638851) | 3638851..3639906 | - | 1056 | WP_193125220.1 | DNA polymerase IV | - |
| IGI24_RS18645 (3639977) | 3639977..3640762 | - | 786 | WP_072132640.1 | hypothetical protein | VF |
| IGI24_RS18650 (3640734) | 3640734..3642446 | + | 1713 | Protein_3554 | hypothetical protein | VF |
| IGI24_RS18655 (3642662) | 3642662..3643159 | - | 498 | WP_000006261.1 | REP-associated tyrosine transposase RayT | - |
| IGI24_RS18660 (3643335) | 3643335..3644108 | - | 774 | WP_001353765.1 | hypothetical protein | VF |
| IGI24_RS18665 (3644294) | 3644294..3644554 | + | 261 | WP_000729704.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| IGI24_RS18670 (3644557) | 3644557..3644835 | + | 279 | WP_000615979.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| IGI24_RS18675 (3644991) | 3644991..3645731 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| IGI24_RS18680 (3645702) | 3645702..3646469 | - | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| IGI24_RS18685 (3646675) | 3646675..3647253 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| IGI24_RS18690 (3647493) | 3647493..3649937 | + | 2445 | WP_000973083.1 | Crotonobetainyl-CoA dehydrogenase | VF |
| IGI24_RS18695 (3649980) | 3649980..3650426 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| IGI24_RS18700 (3650607) | 3650607..3651377 | + | 771 | WP_001741226.1 | 2-oxoglutaramate amidase | - |
| IGI24_RS18705 (3651434) | 3651434..3651598 | - | 165 | Protein_3565 | ISAs1 family transposase | - |
| IGI24_RS18715 (3652379) | 3652379..3652822 | + | 444 | WP_023281868.1 | protein YkfM | - |
| IGI24_RS18720 (3652959) | 3652959..3653744 | - | 786 | WP_001053630.1 | hypothetical protein | - |
| IGI24_RS18730 (3654283) | 3654283..3655014 | - | 732 | WP_001300756.1 | DNA polymerase III subunit epsilon | - |
| IGI24_RS18735 (3655079) | 3655079..3655546 | + | 468 | WP_000917883.1 | ribonuclease HI | - |
| IGI24_RS18740 (3655543) | 3655543..3656265 | - | 723 | WP_001297210.1 | class I SAM-dependent methyltransferase | - |
| IGI24_RS18745 (3656299) | 3656299..3657054 | + | 756 | WP_001052717.1 | hydroxyacylglutathione hydrolase | - |
| IGI24_RS18750 (3657126) | 3657126..3658484 | + | 1359 | WP_000644685.1 | hypothetical protein | VF |
| IGI24_RS18755 (3658532) | 3658532..3659128 | - | 597 | Protein_3574 | methyltransferase domain-containing protein | - |
| IGI24_RS18760 (3659159) | 3659159..3659959 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| IGI24_RS18765 (3660200) | 3660200..3661114 | + | 915 | WP_001741212.1 | HTH-type transcriptional regulator ArgP | VF |
| IGI24_RS18770 (3661111) | 3661111..3661914 | - | 804 | WP_000997033.1 | 2,5-didehydrogluconate reductase DkgB | - |
| IGI24_RS18805 (3667664) | 3667664..3668236 | - | 573 | WP_001140174.1 | Histidine biosynthesis bifunctional protein HisB | VF |
| IGI24_RS18810 (3668424) | 3668424..3669455 | + | 1032 | WP_000593994.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| IGI24_RS18815 (3669448) | 3669448..3670101 | + | 654 | WP_001294600.1 | methionine ABC transporter permease MetI | - |
| IGI24_RS18820 (3670141) | 3670141..3670956 | + | 816 | WP_000874224.1 | methionine ABC transporter substrate-binding lipoprotein MetQ | - |
| IGI24_RS18825 (3671074) | 3671074..3671478 | + | 405 | WP_001202329.1 | Rcs stress response system protein RcsF | - |
| IGI24_RS18830 (3671475) | 3671475..3672182 | + | 708 | WP_000094031.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| IGI24_RS18835 (3672293) | 3672293..3674011 | + | 1719 | WP_001260712.1 | proline--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|