MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 70676 bp
Accession: NZ_CP075169 Location: 5210473..5281148 Organism: Sodalis ligni strain dw23 Replicon: chromosome
Accession: NZ_CP075169 Location: 5210473..5281148 Organism: Sodalis ligni strain dw23 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTU79_RS24320 (GTU79_24305) | 5206074..5207510 | + | 1437 | WP_203524005.1 | aspartate ammonia-lyase | - |
| GTU79_RS24325 (GTU79_24310) | 5207573..5207962 | + | 390 | WP_203524006.1 | divalent cation tolerance protein CutA | - |
| GTU79_RS24330 (GTU79_24315) | 5207938..5209671 | + | 1734 | WP_203524007.1 | protein-disulfide reductase DsbD | - |
| GTU79_RS24335 (GTU79_24320) | 5209729..5210304 | + | 576 | WP_203524008.1 | transcriptional regulator | - |
| GTU79_RS24345 (GTU79_24330) | 5210649..5211911 | + | 1263 | WP_203524009.1 | hypothetical protein ; Integrase | Integrase |
| GTU79_RS30770 | 5212593..5212919 | - | 327 | WP_253073410.1 | hypothetical protein | - |
| GTU79_RS24355 (GTU79_24340) | 5213160..5213741 | - | 582 | WP_253073411.1 | group II intron maturase-specific domain-containing protein | - |
| GTU79_RS30775 | 5213812..5214072 | - | 261 | Protein_4812 | reverse transcriptase domain-containing protein | - |
| GTU79_RS30780 | 5214299..5214550 | - | 252 | WP_253073399.1 | hypothetical protein | - |
| GTU79_RS24365 (GTU79_24350) | 5215041..5215202 | - | 162 | WP_203524011.1 | hypothetical protein | - |
| GTU79_RS30785 | 5216199..5216666 | + | 468 | WP_253073412.1 | hypothetical protein | - |
| GTU79_RS30790 | 5216668..5217117 | + | 450 | WP_253073413.1 | hypothetical protein | - |
| GTU79_RS24375 (GTU79_24360) | 5217389..5218597 | - | 1209 | WP_203524013.1 | MFS transporter | - |
| GTU79_RS24380 (GTU79_24365) | 5218850..5219275 | - | 426 | WP_214513442.1 | hypothetical protein | - |
| GTU79_RS24385 (GTU79_24370) | 5219359..5220006 | - | 648 | WP_214513443.1 | hypothetical protein | VF |
| GTU79_RS24390 (GTU79_24375) | 5220126..5221649 | + | 1524 | Protein_4820 | IS3 family transposase ISSba13 | Transposase |
| GTU79_RS24395 (GTU79_24380) | 5221868..5226136 | - | 4269 | Protein_4821 | hypothetical protein | VF |
| GTU79_RS24400 (GTU79_24385) | 5226188..5226970 | - | 783 | WP_162368808.1 | IS21 family transposase ISEc62 | Transposase |
| GTU79_RS24405 (GTU79_24390) | 5226970..5228149 | - | 1180 | Protein_4823 | IS21 family transposase IS21 | Transposase |
| GTU79_RS24410 (GTU79_24395) | 5228231..5232634 | - | 4404 | WP_203524016.1 | hypothetical protein | VF |
| GTU79_RS30795 | 5234006..5234248 | - | 243 | WP_253073691.1 | hypothetical protein | - |
| GTU79_RS30800 | 5234245..5234490 | - | 246 | WP_253073692.1 | hypothetical protein | - |
| GTU79_RS30805 | 5234471..5234752 | - | 282 | WP_253073414.1 | hypothetical protein | - |
| GTU79_RS30810 | 5234736..5235317 | - | 582 | Protein_4828 | hypothetical protein | - |
| GTU79_RS30815 | 5235808..5235927 | + | 120 | WP_253073415.1 | hypothetical protein | - |
| GTU79_RS24430 (GTU79_24415) | 5237160..5237864 | - | 705 | WP_214513445.1 | hypothetical protein | VF |
| GTU79_RS24435 (GTU79_24420) | 5237970..5238911 | - | 942 | WP_214513446.1 | sedoheptulose 7-phosphate cyclase | - |
| GTU79_RS24440 (GTU79_24425) | 5238862..5239104 | - | 243 | WP_214513447.1 | hypothetical protein | - |
| GTU79_RS24445 (GTU79_24430) | 5239408..5240013 | + | 606 | WP_214513448.1 | acyl-homoserine-lactone synthase | - |
| GTU79_RS24455 (GTU79_24440) | 5240299..5240670 | - | 372 | WP_253073416.1 | autoinducer binding domain-containing protein | - |
| GTU79_RS24460 (GTU79_24445) | 5241185..5242110 | + | 926 | Protein_4835 | hypothetical protein | - |
| GTU79_RS24465 (GTU79_24450) | 5242249..5242443 | + | 195 | WP_203524024.1 | AlpA family transcriptional regulator | - |
| GTU79_RS24470 (GTU79_24455) | 5242460..5243044 | + | 585 | WP_214513451.1 | DUF2857 domain-containing protein | - |
| GTU79_RS24475 (GTU79_24460) | 5243034..5243243 | + | 210 | WP_203524026.1 | TraR/DksA family transcriptional regulator | - |
| GTU79_RS24480 (GTU79_24465) | 5243688..5243909 | + | 222 | WP_203524027.1 | hypothetical protein | - |
| GTU79_RS24485 (GTU79_24470) | 5244013..5244675 | + | 663 | WP_203524028.1 | hypothetical protein | VF |
| GTU79_RS24490 (GTU79_24475) | 5244672..5244953 | + | 282 | WP_203524029.1 | TrbC/VirB2 family protein | - |
| GTU79_RS24495 (GTU79_24480) | 5244963..5247711 | + | 2749 | Protein_4842 | hypothetical protein | VF |
| GTU79_RS24500 (GTU79_24485) | 5247735..5248454 | + | 720 | WP_203524031.1 | type IV secretion system protein | - |
| GTU79_RS24505 (GTU79_24490) | 5248466..5248714 | + | 249 | WP_214513452.1 | EexN family lipoprotein | - |
| GTU79_RS24510 (GTU79_24495) | 5248808..5249847 | + | 1040 | Protein_4845 | type IV secretion system protein | - |
| GTU79_RS24515 (GTU79_24500) | 5250049..5250270 | + | 222 | WP_203524034.1 | hypothetical protein | - |
| GTU79_RS24520 (GTU79_24505) | 5250236..5250757 | + | 522 | WP_253073417.1 | hypothetical protein | - |
| GTU79_RS24525 (GTU79_24510) | 5250998..5251267 | - | 270 | WP_203524035.1 | hypothetical protein | - |
| GTU79_RS24530 (GTU79_24515) | 5251302..5252485 | - | 1184 | Protein_4849 | IS3 family transposase ISAs17 | Transposase |
| GTU79_RS24535 (GTU79_24520) | 5253034..5253249 | - | 216 | WP_214513454.1 | hypothetical protein | - |
| GTU79_RS24540 (GTU79_24525) | 5253370..5253987 | - | 618 | WP_203524037.1 | LysE family transporter | - |
| GTU79_RS24545 (GTU79_24530) | 5254289..5254690 | - | 402 | WP_203524038.1 | VOC family protein | - |
| GTU79_RS24550 (GTU79_24535) | 5255081..5255764 | + | 684 | WP_203524040.1 | hypothetical protein | VF |
| GTU79_RS24555 (GTU79_24540) | 5255764..5256654 | + | 891 | WP_203524061.1 | P-type conjugative transfer protein VirB9 | - |
| GTU79_RS24560 (GTU79_24545) | 5256651..5257889 | + | 1239 | WP_203524041.1 | hypothetical protein | VF |
| GTU79_RS24565 (GTU79_24550) | 5257879..5258907 | + | 1029 | WP_203524042.1 | hypothetical protein | VF |
| GTU79_RS24570 (GTU79_24555) | 5258894..5259295 | + | 402 | WP_203524043.1 | cag pathogenicity island Cag12 family protein | - |
| GTU79_RS24575 (GTU79_24560) | 5259380..5259682 | + | 303 | WP_203524044.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| GTU79_RS24580 (GTU79_24565) | 5259923..5260807 | - | 885 | WP_203524045.1 | LysR family transcriptional regulator | - |
| GTU79_RS24585 (GTU79_24570) | 5260956..5261705 | + | 750 | WP_203524046.1 | hypothetical protein | VF |
| GTU79_RS24590 (GTU79_24575) | 5261718..5262470 | + | 753 | WP_136157296.1 | hypothetical protein | VF |
| GTU79_RS24595 (GTU79_24580) | 5262442..5262672 | + | 231 | WP_214513455.1 | ISNCY family transposase ISVisp7 | Transposase |
| GTU79_RS30825 | 5262811..5262984 | + | 174 | WP_247595566.1 | ISNCY family transposase ISVbsp4 | Transposase |
| GTU79_RS24605 (GTU79_24590) | 5264021..5265894 | + | 1874 | Protein_4864 | type IV secretory system conjugative DNA transfer family protein | - |
| GTU79_RS24610 (GTU79_24595) | 5265903..5266649 | + | 747 | WP_203521099.1 | MobC family replication-relaxation protein | - |
| GTU79_RS24615 (GTU79_24600) | 5266765..5266983 | + | 219 | WP_113867773.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| GTU79_RS24620 (GTU79_24605) | 5266986..5267291 | + | 306 | WP_203521098.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| GTU79_RS24625 (GTU79_24610) | 5267420..5268364 | - | 945 | WP_203521097.1 | zincin-like metallopeptidase domain-containing protein | - |
| GTU79_RS24630 (GTU79_24615) | 5268646..5269626 | + | 981 | WP_203521096.1 | IS110 family transposase ISEc32 | Transposase |
| GTU79_RS24635 (GTU79_24620) | 5269786..5269998 | - | 213 | WP_253073693.1 | hypothetical protein | - |
| GTU79_RS24640 (GTU79_24625) | 5270063..5270338 | - | 276 | WP_214513456.1 | hypothetical protein | - |
| GTU79_RS31040 | 5270301..5270429 | - | 129 | WP_275956943.1 | hypothetical protein | - |
| GTU79_RS24645 (GTU79_24630) | 5271083..5272262 | - | 1180 | Protein_4873 | IS3 family transposase ISAs17 | Transposase |
| GTU79_RS24650 (GTU79_24635) | 5272687..5272860 | + | 174 | WP_214513457.1 | hypothetical protein | - |
| GTU79_RS24655 (GTU79_24640) | 5273119..5273337 | + | 219 | WP_214513458.1 | hypothetical protein | - |
| GTU79_RS24675 (GTU79_24660) | 5275207..5275539 | - | 333 | WP_214513459.1 | hypothetical protein | - |
| GTU79_RS24680 (GTU79_24665) | 5275543..5276466 | - | 924 | WP_214513460.1 | hypothetical protein | - |
| GTU79_RS24685 (GTU79_24670) | 5276463..5276867 | - | 405 | WP_214513461.1 | hypothetical protein | - |
| GTU79_RS24690 (GTU79_24675) | 5277238..5277636 | - | 399 | WP_214513462.1 | hypothetical protein | - |
| GTU79_RS24695 (GTU79_24680) | 5277910..5278095 | - | 186 | WP_253073418.1 | AAA family ATPase | - |
| GTU79_RS24705 (GTU79_24690) | 5280098..5280604 | - | 507 | WP_203521081.1 | GNAT family N-acetyltransferase | Toxin Detail |
| GTU79_RS24710 (GTU79_24695) | 5280601..5280894 | - | 294 | WP_203521080.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| GTU79_RS24715 (GTU79_24700) | 5281339..5281587 | + | 249 | WP_203521079.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| GTU79_RS24720 (GTU79_24705) | 5281588..5281883 | + | 296 | Protein_4884 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GTU79_RS24725 (GTU79_24710) | 5282166..5282552 | - | 387 | WP_214513463.1 | type II toxin-antitoxin system VapC family toxin | - |
| GTU79_RS24730 (GTU79_24715) | 5282549..5282782 | - | 234 | WP_203521076.1 | prevent-host-death protein | - |
| GTU79_RS24735 (GTU79_24720) | 5282930..5283151 | - | 222 | WP_203521075.1 | helix-turn-helix transcriptional regulator | - |
| GTU79_RS24740 (GTU79_24725) | 5283148..5283291 | - | 144 | WP_214514204.1 | hypothetical protein | - |
| GTU79_RS24745 (GTU79_24730) | 5283523..5284917 | - | 1395 | WP_203521074.1 | group II intron reverse transcriptase/maturase | - |
| GTU79_RS24750 (GTU79_24735) | 5285578..5285796 | + | 219 | WP_203521073.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| GTU79_RS24755 (GTU79_24740) | 5285799..5286104 | + | 306 | WP_203523041.1 | type II toxin-antitoxin system toxin CcdB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|