MGE detailed information
MGE type: Genomic_island MGE length: 36759 bp
Accession: NZ_CP075116 Location: 3535260..3572018 Organism: Salmonella enterica subsp. enterica serovar Stanleyville strain CFSAN059881 Replicon: chromosome
Accession: NZ_CP075116 Location: 3535260..3572018 Organism: Salmonella enterica subsp. enterica serovar Stanleyville strain CFSAN059881 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCO40_RS17055 () | 3530831..3533275 | + | 2445 | WP_000973041.1 | acyl-CoA dehydrogenase FadE | - |
| CCO40_RS17060 () | 3533384..3534151 | + | 768 | WP_000015789.1 | amidohydrolase | - |
| CCO40_RS17065 () | 3534522..3534929 | + | 408 | WP_000788200.1 | Spy/CpxP family protein refolding chaperone | - |
| CCO40_RS17070 () | 3535260..3535979 | + | 720 | WP_000787603.1 | Outer membrane protein PagN | VF |
| CCO40_RS17075 () | 3535983..3536198 | - | 216 | WP_001575654.1 | hypothetical protein | - |
| CCO40_RS17080 () | 3536318..3537265 | - | 948 | WP_094889350.1 | LysR family transcriptional regulator | - |
| CCO40_RS17085 () | 3537759..3537999 | - | 241 | Protein_3350 | PerC family transcriptional regulator | - |
| CCO40_RS17090 () | 3538082..3538903 | - | 822 | WP_000119389.1 | polysaccharide deacetylase family protein | - |
| CCO40_RS17095 () | 3539310..3539780 | - | 471 | WP_076934809.1 | AfaD family invasin | - |
| CCO40_RS17100 () | 3539802..3542312 | - | 2511 | WP_094889351.1 | F1 capsule-anchoring protein | VF |
| CCO40_RS17105 () | 3542336..3543073 | - | 738 | WP_094889352.1 | Chaperone protein caf1M | VF |
| CCO40_RS17110 () | 3543157..3543651 | - | 495 | WP_061376324.1 | pilus assembly protein | - |
| CCO40_RS17115 () | 3544412..3545116 | - | 705 | Protein_3356 | integrase core domain-containing protein | - |
| CCO40_RS17120 () | 3545169..3545342 | + | 174 | WP_001531381.1 | hypothetical protein | - |
| CCO40_RS17125 () | 3545407..3545874 | - | 468 | WP_001284951.1 | Imm42 family immunity protein | - |
| CCO40_RS17130 () | 3545867..3546175 | - | 309 | WP_165488057.1 | hypothetical protein | - |
| CCO40_RS22540 () | 3546166..3546303 | - | 138 | WP_231391191.1 | hypothetical protein | - |
| CCO40_RS17140 () | 3546545..3546808 | + | 264 | WP_000994215.1 | hypothetical protein | Toxin Detail |
| CCO40_RS17145 () | 3546855..3547289 | - | 435 | WP_000789494.1 | hypothetical protein | - |
| CCO40_RS17150 () | 3547286..3548839 | - | 1554 | WP_094897886.1 | Putative deoxyribonuclease RhsC | VF |
| CCO40_RS17155 () | 3548854..3549156 | + | 303 | WP_170930898.1 | SymE family type I addiction module toxin | Toxin Detail |
| - | 3548897..3549105 | - | 209 | - | - | Antitoxin Detail |
| CCO40_RS17160 () | 3549201..3549518 | - | 318 | WP_140428680.1 | hypothetical protein | - |
| CCO40_RS17165 () | 3549484..3554169 | - | 4686 | WP_220569202.1 | RHS repeat-associated core domain-containing protein | - |
| CCO40_RS17170 () | 3554185..3554643 | - | 459 | WP_000186513.1 | DcrB-related protein | - |
| CCO40_RS17175 () | 3554703..3556934 | - | 2232 | WP_000011513.1 | Actin cross-linking toxin VgrG1 | VF |
| CCO40_RS17180 () | 3557331..3557852 | - | 522 | WP_000968384.1 | DUF2778 domain-containing protein | - |
| CCO40_RS17185 () | 3557876..3558292 | - | 417 | WP_000759642.1 | DUF2195 family protein | - |
| CCO40_RS22545 () | 3558289..3558384 | - | 96 | Protein_3371 | hypothetical protein | - |
| CCO40_RS17190 () | 3558420..3558881 | - | 462 | WP_001684272.1 | hypothetical protein | - |
| CCO40_RS17195 () | 3558866..3559336 | - | 471 | WP_000528843.1 | glucosaminidase domain-containing protein | - |
| CCO40_RS17200 () | 3559379..3560146 | - | 768 | WP_001254127.1 | TagF domain-containing protein | - |
| CCO40_RS17205 () | 3560146..3564015 | - | 3870 | WP_094889354.1 | hypothetical protein | VF |
| CCO40_RS17210 () | 3564049..3564480 | - | 432 | WP_094889360.1 | Shiga toxin A subunit | - |
| CCO40_RS17215 () | 3564683..3565456 | - | 774 | WP_140428677.1 | Rap1a/Tai family immunity protein | - |
| CCO40_RS17220 () | 3565461..3566765 | - | 1305 | WP_071055428.1 | Outer membrane porin F | VF |
| CCO40_RS17225 () | 3566762..3568105 | - | 1344 | WP_000118732.1 | hypothetical protein | VF |
| CCO40_RS17230 () | 3568109..3568645 | - | 537 | WP_001682196.1 | hypothetical protein | VF |
| CCO40_RS17235 () | 3568713..3569198 | - | 486 | WP_000119443.1 | Protein hcp1 | VF |
| CCO40_RS17240 () | 3569341..3569724 | - | 384 | WP_000379146.1 | type VI secretion system amidase immunity protein Tai4 | - |
| CCO40_RS17245 () | 3569709..3570194 | - | 486 | WP_001081551.1 | type VI secretion system amidase effector protein Tae4 | - |
| CCO40_RS22550 () | 3570237..3570431 | - | 195 | Protein_3384 | type VI secretion system lipoprotein TssJ | - |
| CCO40_RS17250 () | 3570498..3570983 | - | 486 | WP_000312802.1 | Protein hcp1 | VF |
| CCO40_RS17255 () | 3571220..3571645 | - | 426 | WP_001171573.1 | hypothetical protein | - |
| CCO40_RS17260 () | 3571617..3572018 | - | 402 | WP_001147175.1 | BPSL0067 family protein | - |
| CCO40_RS17265 () | 3572071..3573579 | - | 1509 | WP_000013889.1 | type VI secretion system contractile sheath large subunit | - |
| CCO40_RS17270 () | 3573603..3574145 | - | 543 | WP_000996815.1 | type VI secretion system contractile sheath small subunit | - |
| CCO40_RS17275 () | 3574245..3576884 | - | 2640 | WP_094889355.1 | type VI secretion system ATPase TssH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|