MGE detailed information
MGE type: Genomic_island MGE length: 10428 bp
Accession: NZ_CP075116 Location: 1006475..1016902 Organism: Salmonella enterica subsp. enterica serovar Stanleyville strain CFSAN059881 Replicon: chromosome
Accession: NZ_CP075116 Location: 1006475..1016902 Organism: Salmonella enterica subsp. enterica serovar Stanleyville strain CFSAN059881 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCO40_RS04785 (1001588) | 1001588..1001968 | + | 381 | WP_052932524.1 | DUF4440 domain-containing protein | - |
| CCO40_RS04790 (1002024) | 1002024..1004591 | - | 2568 | WP_001005802.1 | DNA mismatch repair protein MutS | - |
| CCO40_RS04795 (1004750) | 1004750..1005271 | + | 522 | WP_094889101.1 | cytoplasmic protein | - |
| CCO40_RS04800 (1005443) | 1005443..1006099 | - | 657 | WP_000420452.1 | protein-serine/threonine phosphatase | - |
| CCO40_RS04805 (1006446) | 1006446..1006651 | + | 206 | Protein_943 | IS5 family transposase ISEcl3 | Transposase |
| CCO40_RS04810 (1006724) | 1006724..1007251 | - | 528 | WP_000971655.1 | GNAT family N-acetyltransferase | Toxin Detail |
| CCO40_RS04815 (1007248) | 1007248..1007538 | - | 291 | WP_000855692.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| CCO40_RS04820 (1007808) | 1007808..1007986 | - | 179 | Protein_946 | IS3 family transposase | - |
| CCO40_RS04825 (1008227) | 1008227..1008553 | + | 327 | WP_000393302.1 | hypothetical protein | - |
| CCO40_RS04830 (1008826) | 1008826..1009173 | - | 348 | WP_001669174.1 | DUF1493 family protein | - |
| CCO40_RS04835 (1009158) | 1009158..1009607 | - | 450 | WP_000381617.1 | hypothetical protein | - |
| CCO40_RS04840 (1010039) | 1010039..1010482 | - | 444 | WP_094889102.1 | hypothetical protein | VF |
| CCO40_RS04845 (1010939) | 1010939..1011589 | + | 651 | WP_001674874.1 | Invasion protein InvF | VF |
| CCO40_RS04850 (1011586) | 1011586..1013274 | + | 1689 | WP_000848099.1 | Protein InvG | VF |
| CCO40_RS04855 (1013271) | 1013271..1014389 | + | 1119 | WP_000612171.1 | Protein MxiC | VF |
| CCO40_RS04860 (1014414) | 1014414..1016471 | + | 2058 | WP_000927220.1 | Invasion protein InvA | VF |
| CCO40_RS04865 (1016495) | 1016495..1016902 | + | 408 | WP_001164066.1 | Surface presentation of antigens protein SpaK | VF |
| CCO40_RS04870 (1016899) | 1016899..1018194 | + | 1296 | WP_000856766.1 | SctN family type III secretion system ATPase InvC | - |
| CCO40_RS04875 (1018172) | 1018172..1018615 | + | 444 | WP_001520714.1 | SPI-1 type III secretion system protein SpaM | - |
| CCO40_RS04880 (1018615) | 1018615..1019625 | + | 1011 | WP_000503085.1 | SPI-1 type III secretion system protein SpaN | - |
| CCO40_RS04885 (1019625) | 1019625..1020536 | + | 912 | WP_000058739.1 | SPI-1 type III secretion system protein SpaO | - |
| CCO40_RS04890 (1020526) | 1020526..1021200 | + | 675 | WP_000526016.1 | SPI-1 type III secretion system export apparatus protein SpaP | - |
| CCO40_RS04895 (1021226) | 1021226..1021486 | + | 261 | WP_000342503.1 | SPI-1 type III secretion system export apparatus protein SpaQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA10052 | UFRD01000002 | 4599654..4610080 | 0.007 |