MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 74688 bp
Accession: NZ_CP075114 Location: 1..74688 Organism: Salmonella enterica subsp. enterica serovar Dublin strain CFSAN059898 Replicon: plasmid pCFSAN059898
Accession: NZ_CP075114 Location: 1..74688 Organism: Salmonella enterica subsp. enterica serovar Dublin strain CFSAN059898 Replicon: plasmid pCFSAN059898
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCO47_RS23570 (CCO47_23570) | 1..330 | + | 330 | WP_000866650.1 | hypothetical protein | - |
| CCO47_RS23575 (CCO47_23575) | 373..552 | + | 180 | WP_001575529.1 | hypothetical protein | - |
| CCO47_RS23580 (CCO47_23580) | 622..771 | + | 150 | WP_000003880.1 | hypothetical protein | - |
| CCO47_RS23585 (CCO47_23585) | 784..1056 | + | 273 | WP_000160399.1 | hypothetical protein | - |
| CCO47_RS23595 (CCO47_23595) | 1382..1927 | + | 546 | WP_000757691.1 | DNA distortion polypeptide 1 | - |
| CCO47_RS23600 (CCO47_23600) | 1930..3111 | + | 1182 | WP_125831865.1 | hypothetical protein | Relaxase |
| CCO47_RS23605 (CCO47_23605) | 3457..3975 | + | 519 | WP_001675951.1 | transcription termination/antitermination NusG family protein | - |
| CCO47_RS23610 (CCO47_23610) | 3905..4117 | + | 213 | WP_000125172.1 | hypothetical protein | - |
| CCO47_RS23615 (CCO47_23615) | 4150..4797 | + | 648 | WP_000953526.1 | Type IV secretion system protein virB1 | VF |
| CCO47_RS23620 (CCO47_23620) | 4775..5071 | + | 297 | WP_000916182.1 | TrbC/VirB2 family protein | - |
| CCO47_RS23625 (CCO47_23625) | 5090..7843 | + | 2754 | WP_001675613.1 | Type IV secretion system protein virB4 | VF |
| CCO47_RS23630 (CCO47_23630) | 7854..8612 | + | 759 | WP_000744198.1 | type IV secretion system protein | - |
| CCO47_RS23635 (CCO47_23635) | 8613..8840 | + | 228 | WP_000835348.1 | EexN family lipoprotein | - |
| CCO47_RS23640 (CCO47_23640) | 8850..9983 | + | 1134 | WP_000513456.1 | type IV secretion system protein | - |
| CCO47_RS24330 | 10110..10238 | + | 129 | WP_001328099.1 | hypothetical protein | - |
| CCO47_RS23645 (CCO47_23645) | 10228..10941 | + | 714 | WP_000394613.1 | type IV secretion system protein | - |
| CCO47_RS23650 (CCO47_23650) | 10946..11875 | + | 930 | WP_000783377.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| CCO47_RS23655 (CCO47_23655) | 11872..13077 | + | 1206 | WP_000139139.1 | Type IV secretion system protein virB10 | VF |
| CCO47_RS23660 (CCO47_23660) | 13079..14109 | + | 1031 | Protein_18 | Type IV secretion system protein VirB11 | VF |
| CCO47_RS23665 (CCO47_23665) | 14112..15947 | + | 1836 | WP_000053823.1 | type IV secretory system conjugative DNA transfer family protein | - |
| CCO47_RS23670 (CCO47_23670) | 15944..16357 | + | 414 | WP_001575522.1 | cag pathogenicity island Cag12 family protein | - |
| CCO47_RS23675 (CCO47_23675) | 16354..16656 | + | 303 | WP_000717627.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| CCO47_RS23680 (CCO47_23680) | 16769..16963 | + | 195 | Protein_22 | ATP-binding protein | - |
| CCO47_RS23685 (CCO47_23685) | 16967..17542 | + | 576 | WP_001198970.1 | hypothetical protein | - |
| CCO47_RS23690 (CCO47_23690) | 17547..19700 | + | 2154 | WP_001235752.1 | type IA DNA topoisomerase | - |
| CCO47_RS23695 (CCO47_23695) | 19697..19903 | + | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| CCO47_RS23700 (CCO47_23700) | 19919..20353 | + | 435 | WP_001293135.1 | H-NS family nucleoid-associated regulatory protein | - |
| CCO47_RS23705 (CCO47_23705) | 21016..21501 | + | 486 | WP_001281416.1 | Abi family protein | - |
| CCO47_RS23710 (CCO47_23710) | 21660..22787 | - | 1128 | WP_000156234.1 | hypothetical protein | - |
| CCO47_RS23715 (CCO47_23715) | 23865..24509 | - | 645 | WP_000203397.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| CCO47_RS23720 (CCO47_23720) | 24583..28839 | + | 4257 | Protein_30 | Multifunctional conjugation protein TraI | Relaxase |
| CCO47_RS23725 (CCO47_23725) | 28859..29599 | + | 741 | WP_000177628.1 | conjugal transfer pilus acetylase TraX | - |
| CCO47_RS23730 (CCO47_23730) | 29654..30217 | + | 564 | WP_000129019.1 | fertility inhibition protein FinO | - |
| CCO47_RS24335 | 30334..30615 | + | 282 | Protein_33 | disulfide bond formation protein DsbA | - |
| CCO47_RS23740 (CCO47_23740) | 30896..31463 | + | 568 | Protein_34 | phospholipase D family protein | - |
| CCO47_RS23745 (CCO47_23745) | 31574..31840 | + | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
| CCO47_RS23750 (CCO47_23750) | 32088..32165 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| CCO47_RS23755 (CCO47_23755) | 32146..33027 | + | 882 | WP_001746973.1 | incFII family plasmid replication initiator RepA | - |
| CCO47_RS23760 (CCO47_23760) | 33822..34216 | - | 395 | Protein_38 | IS66 family transposase zinc-finger binding domain-containing protein | - |
| CCO47_RS23765 (CCO47_23765) | 34285..34419 | - | 135 | Protein_39 | IS66 family transposase ISEc8 | Transposase |
| CCO47_RS23770 (CCO47_23770) | 34574..34771 | - | 198 | WP_001675602.1 | transposase | - |
| CCO47_RS23775 (CCO47_23775) | 35066..35668 | - | 603 | WP_223151229.1 | hypothetical protein | - |
| CCO47_RS23780 (CCO47_23780) | 35896..36555 | - | 660 | WP_001575507.1 | hypothetical protein | - |
| CCO47_RS23785 (CCO47_23785) | 38111..38383 | + | 273 | WP_001178538.1 | hypothetical protein | - |
| CCO47_RS23790 (CCO47_23790) | 38619..39416 | + | 798 | WP_000704721.1 | hypothetical protein | VF |
| CCO47_RS23795 (CCO47_23795) | 39444..40208 | + | 765 | WP_000827659.1 | hypothetical protein | VF |
| CCO47_RS23800 (CCO47_23800) | 40195..40470 | + | 276 | WP_001020576.1 | hypothetical protein | - |
| CCO47_RS23805 (CCO47_23805) | 40470..41183 | + | 714 | WP_000801115.1 | hypothetical protein | VF |
| CCO47_RS23810 (CCO47_23810) | 41308..41892 | + | 585 | WP_001575501.1 | hypothetical protein | - |
| CCO47_RS23815 (CCO47_23815) | 41965..42177 | + | 213 | WP_000063794.1 | P fimbrial regulatory protein KS71A | VF |
| CCO47_RS23820 (CCO47_23820) | 42438..42599 | + | 162 | WP_001816720.1 | hypothetical protein | - |
| CCO47_RS23825 (CCO47_23825) | 42625..43473 | + | 849 | WP_000175391.1 | SdiA-regulated domain-containing protein | - |
| CCO47_RS23830 (CCO47_23830) | 44043..44471 | - | 429 | WP_000812999.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| CCO47_RS23835 (CCO47_23835) | 44468..44698 | - | 231 | WP_001261283.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| CCO47_RS23840 (CCO47_23840) | 45443..45661 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| CCO47_RS23845 (CCO47_23845) | 45663..45968 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| CCO47_RS23850 (CCO47_23850) | 45970..46260 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| CCO47_RS23855 (CCO47_23855) | 46257..46778 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| CCO47_RS23860 (CCO47_23860) | 46813..47595 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| CCO47_RS23865 (CCO47_23865) | 47604..48317 | + | 714 | WP_000545756.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| CCO47_RS23870 (CCO47_23870) | 48342..48830 | + | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| CCO47_RS23875 (CCO47_23875) | 48824..49160 | + | 337 | Protein_61 | hypothetical protein | - |
| CCO47_RS24340 | 49070..49492 | + | 423 | WP_225236769.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CCO47_RS23880 (CCO47_23880) | 49387..49932 | + | 546 | WP_071591236.1 | inverse autotransporter beta domain-containing protein | - |
| CCO47_RS23885 (CCO47_23885) | 49999..50385 | - | 387 | WP_012301160.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| CCO47_RS23890 (CCO47_23890) | 50442..50867 | + | 426 | WP_000064919.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| CCO47_RS23895 (CCO47_23895) | 50994..51644 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| CCO47_RS23900 (CCO47_23900) | 51905..52630 | - | 726 | WP_001122242.1 | MAPK phosphothreonine lyase | VF |
| CCO47_RS23905 (CCO47_23905) | 52911..54692 | - | 1782 | WP_001675599.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| CCO47_RS23910 (CCO47_23910) | 54744..54911 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| CCO47_RS23915 (CCO47_23915) | 54874..55641 | - | 768 | WP_001575487.1 | virulence protein SpvA | - |
| CCO47_RS23920 (CCO47_23920) | 55815..55979 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| CCO47_RS23925 (CCO47_23925) | 56153..57046 | - | 894 | WP_000346692.1 | virulence genes transcriptional activator SpvR | - |
| CCO47_RS23930 (CCO47_23930) | 57653..58690 | + | 1038 | WP_001121398.1 | IS630 family transposase ISEc33 | Transposase |
| CCO47_RS23935 (CCO47_23935) | 58879..59904 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| CCO47_RS23940 (CCO47_23940) | 59837..61501 | - | 1665 | WP_000098783.1 | IS481 family transposase ISAzs36 | Transposase |
| CCO47_RS23945 (CCO47_23945) | 61485..62045 | - | 561 | WP_001240330.1 | Tn3 family transposase TnBth3 | Transposase |
| CCO47_RS23950 (CCO47_23950) | 62252..62992 | - | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| CCO47_RS23955 (CCO47_23955) | 63647..64135 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| CCO47_RS23960 (CCO47_23960) | 64394..65509 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| CCO47_RS23965 (CCO47_23965) | 65595..66011 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| CCO47_RS23970 (CCO47_23970) | 66114..66530 | + | 417 | WP_000988946.1 | hypothetical protein | - |
| CCO47_RS23975 (CCO47_23975) | 66587..67188 | + | 602 | Protein_82 | DUF2913 family protein | - |
| CCO47_RS23980 (CCO47_23980) | 67185..68127 | - | 943 | Protein_83 | Recombination-promoting nuclease RpnA | VF |
| CCO47_RS23985 (CCO47_23985) | 68521..69141 | + | 621 | WP_000864788.1 | ParA family protein | - |
| CCO47_RS23990 (CCO47_23990) | 69193..69423 | + | 231 | WP_000051066.1 | plasmid partition protein ParG | - |
| CCO47_RS23995 (CCO47_23995) | 70062..70415 | - | 354 | WP_001675596.1 | DNA distortion polypeptide 3 | - |
| CCO47_RS24000 (CCO47_24000) | 70552..70998 | - | 447 | WP_001074381.1 | hypothetical protein | - |
| CCO47_RS24005 (CCO47_24005) | 71038..71874 | - | 837 | WP_001575533.1 | replication initiation protein | - |
| CCO47_RS24010 (CCO47_24010) | 73110..73361 | + | 252 | WP_000121743.1 | plasmid stabilization protein | - |
| CCO47_RS24015 (CCO47_24015) | 73351..73632 | + | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CCO47_RS24020 (CCO47_24020) | 73778..74101 | + | 324 | WP_001181909.1 | hypothetical protein | - |
| CCO47_RS24025 (CCO47_24025) | 74146..74391 | + | 246 | WP_000356542.1 | hypothetical protein | - |
| CCO47_RS24030 (CCO47_24030) | 74381..74596 | + | 216 | WP_001180117.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|