MGE detailed information
MGE type: Genomic_island MGE length: 11362 bp
Accession: NZ_CP075113 Location: 833691..845052 Organism: Salmonella enterica subsp. enterica serovar Dublin strain CFSAN059898 Replicon: chromosome
Accession: NZ_CP075113 Location: 833691..845052 Organism: Salmonella enterica subsp. enterica serovar Dublin strain CFSAN059898 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCO47_RS04005 (829137) | 829137..830235 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| CCO47_RS04010 (830245) | 830245..831762 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| CCO47_RS04015 (831838) | 831838..832383 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| CCO47_RS04020 (832648) | 832648..833406 | + | 759 | WP_000244328.1 | amidase activator ActS | - |
| CCO47_RS04030 (833691) | 833691..834497 | - | 807 | WP_001574939.1 | DUF1460 domain-containing protein | - |
| CCO47_RS04035 (834777) | 834777..835028 | - | 252 | WP_001576352.1 | hypothetical protein | - |
| CCO47_RS04040 (835237) | 835237..835464 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| CCO47_RS04045 (835464) | 835464..835862 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| CCO47_RS04050 (836670) | 836670..837206 | + | 537 | WP_001038502.1 | hypothetical protein | VF |
| CCO47_RS04055 (837253) | 837253..837885 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| CCO47_RS04060 (838604) | 838604..839185 | + | 582 | WP_001244651.1 | hypothetical protein | VF |
| CCO47_RS04065 (839305) | 839305..841794 | + | 2490 | WP_000705504.1 | hypothetical protein | VF |
| CCO47_RS04070 (841835) | 841835..842578 | + | 744 | WP_000798504.1 | hypothetical protein | VF |
| CCO47_RS04075 (842575) | 842575..843651 | + | 1077 | WP_094912426.1 | hypothetical protein | - |
| CCO47_RS04080 (843795) | 843795..844307 | + | 513 | WP_000336258.1 | CaiF/GrlA family transcriptional regulator | - |
| CCO47_RS04085 (844294) | 844294..845052 | + | 759 | WP_000134794.1 | transcriptional regulator | - |
| CCO47_RS04090 (845262) | 845262..846152 | - | 891 | WP_001747399.1 | nickel/cobalt efflux protein RcnA | - |
| CCO47_RS04095 (846273) | 846273..846545 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| CCO47_RS04100 (846576) | 846576..847805 | - | 1230 | WP_000036836.1 | amino acid permease | - |
| CCO47_RS04105 (847947) | 847947..848402 | - | 456 | WP_001574932.1 | multidrug/biocide efflux PACE transporter | - |
| CCO47_RS04110 (848506) | 848506..849369 | + | 864 | WP_001270781.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.008 |