NZ_CP0750381..147099

MGE detailed information

MGE type: Conjugative plasmid        MGE length: 147099 bp
Accession: NZ_CP075038        Location: 1..147099         Organism: Salmonella enterica subsp. enterica serovar Give strain CFSAN012622       Replicon: plasmid pCFSAN012622


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GJ28_RS22160 (1) 1..633 + 633 WP_031570456.1 type-F conjugative transfer system protein TraW -
GJ28_RS22165 (630) 630..1622 + 993 WP_001712363.1 conjugal transfer pilus assembly protein TraU -
GJ28_RS22170 (1651) 1651..1986 + 336 WP_031570459.1 hypothetical protein -
GJ28_RS22175 (1979) 1979..2431 + 453 WP_031570461.1 hypothetical protein -
GJ28_RS22180 (2459) 2459..3097 + 639 WP_031570464.1 type-F conjugative transfer system pilin assembly protein TrbC -
GJ28_RS22185 (3094) 3094..4902 + 1809 WP_031570468.1 type-F conjugative transfer system mating-pair stabilization protein TraN -
GJ28_RS22190 (4929) 4929..5158 + 230 Protein_7 conjugal transfer protein TrbE -
GJ28_RS22195 (5151) 5151..5894 + 744 WP_031570470.1 type-F conjugative transfer system pilin assembly protein TraF -
GJ28_RS22200 (6508) 6508..7473 - 966 WP_259399387.1 hypothetical protein -
GJ28_RS22205 (7530) 7530..7808 + 279 WP_031570473.1 type-F conjugative transfer system pilin chaperone TraQ -
GJ28_RS22210 (7795) 7795..8349 + 555 WP_031570475.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
GJ28_RS22215 (8279) 8279..8620 + 342 WP_072010162.1 P-type conjugative transfer protein TrbJ -
GJ28_RS22220 (8607) 8607..8999 + 393 WP_031570480.1 F-type conjugal transfer protein TrbF -
GJ28_RS22225 (8986) 8986..10359 + 1374 WP_031570483.1 conjugal transfer pilus assembly protein TraH -
GJ28_RS22230 (10356) 10356..13175 + 2820 WP_031570486.1 conjugal transfer mating-pair stabilization protein TraG -
GJ28_RS22235 (13178) 13178..13489 - 312 WP_031570490.1 heavy metal-binding domain-containing protein -
GJ28_RS22240 (13643) 13643..14431 + 789 WP_031615778.1 hypothetical protein -
GJ28_RS22245 (14607) 14607..15341 + 735 WP_031570496.1 hypothetical protein -
GJ28_RS22250 (15397) 15397..17550 + 2154 WP_031570500.1 type IV conjugative transfer system coupling protein TraD -
GJ28_RS22255 (17559) 17559..17957 - 399 WP_001377646.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
GJ28_RS22260 (17957) 17957..18184 - 228 WP_000450532.1 toxin-antitoxin system antitoxin VapB Antitoxin Detail
GJ28_RS22265 (18266) 18266..23536 + 5271 WP_031570504.1 Multifunctional conjugation protein TraI Relaxase
GJ28_RS22270 (23602) 23602..24033 + 432 WP_031570508.1 hypothetical protein -
GJ28_RS22275 (24055) 24055..24789 + 735 WP_031570511.1 conjugal transfer pilus acetylase TraX -
GJ28_RS22280 (24844) 24844..25404 + 561 WP_031570514.1 fertility inhibition protein FinO -
GJ28_RS23260 (25517) 25517..25732 + 216 WP_259399388.1 hypothetical protein -
GJ28_RS22285 (26081) 26081..26212 + 132 WP_072134258.1 Hok/Gef family protein -
GJ28_RS22290 (26494) 26494..26751 + 258 WP_031571866.1 replication regulatory protein RepA -
GJ28_RS23265 (26854) 26854..27034 + 181 Protein_29 protein CopA/IncA -
GJ28_RS23270 (27018) 27018..27060 + 43 Protein_30 hypothetical protein -
GJ28_RS22300 (27053) 27053..28075 + 1023 WP_031571864.1 plasmid replication initiator RepA -
GJ28_RS22305 (28858) 28858..29394 + 537 WP_000123884.1 ProQ/FINO family protein -
GJ28_RS22310 (30211) 30211..31149 + 939 WP_220566932.1 hypothetical protein -
GJ28_RS22315 (31324) 31324..31561 + 238 Protein_34 replication regulatory protein RepA -
GJ28_RS23275 (31603) 31603..31788 + 186 Protein_35 protein CopA/IncA -
GJ28_RS23280 (31734) 31734..31871 + 138 WP_072010155.1 RepA leader peptide Tap -
GJ28_RS22325 (31899) 31899..32567 + 669 WP_049828543.1 hypothetical protein VF
GJ28_RS22330 (33059) 33059..33219 + 161 Protein_38 Tn3 family transposase TnpA_Tn3 Transposase
GJ28_RS22335 (33975) 33975..34274 + 300 WP_031570124.1 Major pilu subunit operon regulatory protein PapB VF
GJ28_RS22340 (34282) 34282..34815 + 534 WP_031570127.1 hypothetical protein VF
GJ28_RS22345 (34824) 34824..37274 + 2451 WP_049828544.1 Outer membrane usher protein YraJ VF
GJ28_RS22350 (37267) 37267..38055 + 789 WP_031570135.1 Chaperone protein FaeE VF
GJ28_RS22355 (38083) 38083..38577 + 495 WP_031570138.1 hypothetical protein VF
GJ28_RS22360 (38811) 38811..39611 + 801 WP_259399389.1 hypothetical protein -
GJ28_RS22365 (39846) 39846..40643 + 798 WP_031570144.1 hypothetical protein VF
GJ28_RS22370 (40670) 40670..41434 + 765 WP_031570146.1 hypothetical protein VF
GJ28_RS23285 (41421) 41421..41810 + 390 WP_259399390.1 hypothetical protein -
GJ28_RS22380 (41725) 41725..42444 + 720 WP_049828551.1 hypothetical protein VF
GJ28_RS22385 (42589) 42589..43128 + 540 WP_259399391.1 hypothetical protein -
GJ28_RS22390 (43258) 43258..43548 + 291 WP_259399392.1 hypothetical protein VF
GJ28_RS22395 (43842) 43842..45500 + 1659 WP_044126683.1 Protein InvG VF
GJ28_RS22400 (45490) 45490..46620 + 1131 WP_077916028.1 Protein MxiC VF
GJ28_RS22405 (46614) 46614..48680 + 2067 WP_031570162.1 Invasion protein InvA VF
GJ28_RS22410 (48717) 48717..50009 + 1293 WP_031570165.1 putative ATP synthase SpaL VF
GJ28_RS22415 (49993) 49993..50460 + 468 WP_031570167.1 hypothetical protein VF
GJ28_RS22420 (50435) 50435..51232 + 798 WP_259399393.1 hypothetical protein VF
GJ28_RS22425 (51232) 51232..52131 + 900 WP_031570171.1 Surface presentation of antigens protein SpaO VF
GJ28_RS22430 (52121) 52121..52786 + 666 WP_031570173.1 Surface presentation of antigens protein SpaP VF
GJ28_RS22435 (52817) 52817..53077 + 261 WP_031570176.1 hypothetical protein VF
GJ28_RS22440 (53082) 53082..53855 + 774 WP_031570179.1 Surface presentation of antigens protein SpaR VF
GJ28_RS22445 (53862) 53862..54950 + 1089 WP_031570181.1 Surface presentation of antigens protein SpaS VF
GJ28_RS22450 (55001) 55001..55501 + 501 WP_031570184.1 Chaperone protein SicA VF
GJ28_RS22455 (55494) 55494..57221 + 1728 WP_031570187.1 Cell invasion protein SipB VF
GJ28_RS22460 (57251) 57251..58234 + 984 WP_072010165.1 Cell invasion protein SipC VF
GJ28_RS22465 (58443) 58443..59276 + 834 Protein_65 Cell invasion protein SipD VF
GJ28_RS22470 (59426) 59426..60538 + 1113 WP_259399394.1 Protein PrgH VF
GJ28_RS22475 (60557) 60557..60805 + 249 WP_031570197.1 Protein PrgI VF
GJ28_RS22480 (60824) 60824..61123 + 300 WP_049828546.1 hypothetical protein VF
GJ28_RS22485 (61120) 61120..61872 + 753 WP_031570204.1 Lipoprotein PrgK VF
GJ28_RS22490 (61865) 61865..62461 + 597 WP_049828547.1 Oxygen-regulated invasion protein OrgA VF
GJ28_RS22495 (62400) 62400..63095 + 696 WP_031570210.1 Oxygen-regulated invasion protein OrgB VF
GJ28_RS22500 (63411) 63411..64106 + 696 WP_159105479.1 hypothetical protein -
GJ28_RS22505 (64302) 64302..65951 + 1650 WP_031570216.1 Secreted effector protein SptP VF
GJ28_RS22510 (66006) 66006..66392 + 387 WP_259399395.1 Chaperone protein sicP VF
GJ28_RS22515 (66625) 66625..67089 + 465 WP_149027834.1 hypothetical protein -
GJ28_RS22520 (67218) 67218..67550 - 333 WP_031570225.1 hypothetical protein VF
GJ28_RS22525 (68312) 68312..69241 + 930 WP_077916030.1 hypothetical protein VF
GJ28_RS22530 (69723) 69723..70316 + 594 WP_149027835.1 hypothetical protein -
GJ28_RS22535 (70313) 70313..70573 + 261 WP_031570237.1 hypothetical protein -
GJ28_RS22540 (70596) 70596..71741 + 1146 WP_031570241.1 hypothetical protein -
GJ28_RS22545 (71751) 71751..72230 + 480 WP_031570244.1 type III secretion system chaperone -
GJ28_RS22550 (72218) 72218..72670 + 453 WP_049828548.1 type III secretion system chaperone -
GJ28_RS22555 (72641) 72641..73870 - 1230 Protein_83 IS3 family transposase IS2 Transposase
GJ28_RS22560 (74117) 74117..74371 - 255 Protein_84 Txe/YoeB family addiction module toxin -
GJ28_RS22565 (74368) 74368..74619 - 252 WP_031570260.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
GJ28_RS22570 (75266) 75266..76777 - 1512 WP_031570266.1 IS66 family transposase ISCro1 Transposase
GJ28_RS22575 (76797) 76797..77144 - 348 WP_031570268.1 IS66 family transposase ISCro1 Transposase
GJ28_RS22580 (77144) 77144..77821 - 678 WP_031615766.1 IS66 family transposase ISCro1 Transposase
GJ28_RS22585 (78257) 78257..79024 - 768 WP_149027836.1 hypothetical protein -
GJ28_RS22590 (79324) 79324..79917 + 594 WP_077916035.1 IS66 family transposase ISEc8 Transposase
GJ28_RS22595 (80245) 80245..80832 + 588 WP_149027837.1 hypothetical protein -
GJ28_RS22600 (80890) 80890..81117 + 228 Protein_92 IS3 family transposase -
GJ28_RS23290 (81217) 81217..81324 + 108 Protein_93 antitoxin -
GJ28_RS22605 (81355) 81355..81813 - 459 Protein_94 type III effector phosphothreonine lyase -
GJ28_RS23295 (82312) 82312..82578 - 267 Protein_95 DsbA family protein -
GJ28_RS22615 (82775) 82775..82948 - 174 WP_259399396.1 hypothetical protein VF
GJ28_RS22620 (83446) 83446..84447 - 1002 WP_031570277.1 spore coat protein U domain-containing protein -
GJ28_RS22625 (85046) 85046..85927 - 882 WP_149027840.1 Minor fimbrial protein PrsF VF
GJ28_RS22630 (86041) 86041..86433 - 393 WP_049828549.1 hypothetical protein -
GJ28_RS22635 (86617) 86617..87147 - 531 WP_259399386.1 Fimbrial protein PapE VF
GJ28_RS22640 (87166) 87166..87717 - 552 WP_031570283.1 Fimbrial adapter PapK VF
GJ28_RS22645 (87735) 87735..88322 - 588 WP_031570286.1 hypothetical protein VF
GJ28_RS22650 (88358) 88358..89053 - 696 WP_259399397.1 Chaperone protein PapD VF
GJ28_RS22655 (89218) 89218..91725 - 2508 WP_031570292.1 Outer membrane usher protein PapC VF
GJ28_RS22660 (91882) 91882..92469 - 588 WP_031570295.1 PAP fimbrial minor pilin protein VF
GJ28_RS22665 (92551) 92551..93063 - 513 WP_031570298.1 Pap fimbrial major pilin protein VF
GJ28_RS22670 (93291) 93291..93599 - 309 WP_031615770.1 Major pilu subunit operon regulatory protein PapB VF
GJ28_RS22675 (94219) 94219..94396 + 178 Protein_108 site-specific integrase -
GJ28_RS22680 (94381) 94381..94620 + 240 Protein_109 Tn3 family transposase TnpR_TnEc1 Transposase
GJ28_RS22685 (95223) 95223..98543 - 3321 WP_031570303.1 autotransporter domain-containing protein -
GJ28_RS22690 (98666) 98666..99214 - 549 WP_031570305.1 Tn3 family transposase TnpR_Tn3 Transposase
GJ28_RS22695 (99380) 99380..100709 + 1330 Protein_112 DUF4158 domain-containing protein -
GJ28_RS22700 (101526) 101526..102494 - 969 WP_031570308.1 Lipid A biosynthesis myristoyltransferase VF
GJ28_RS22705 (102575) 102575..103363 - 789 WP_049828550.1 VirK/YbjX family protein -
GJ28_RS22710 (103522) 103522..104628 - 1107 WP_031570315.1 glycosyltransferase family 4 protein -
GJ28_RS22715 (104639) 104639..105457 - 819 WP_031570318.1 polysaccharide deacetylase family protein -
GJ28_RS22720 (105487) 105487..105723 - 237 WP_031570321.1 hypothetical protein -
GJ28_RS22725 (105844) 105844..106182 - 339 WP_031615773.1 Transcriptional regulatory protein RcsB VF
GJ28_RS22730 (107556) 107556..108026 - 471 WP_031570332.1 DNA-binding protein -
GJ28_RS22735 (108699) 108699..108917 + 219 WP_031570335.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin Detail
GJ28_RS22740 (108919) 108919..109224 + 306 WP_031570338.1 type II toxin-antitoxin system toxin CcdB Toxin Detail
GJ28_RS22745 (109226) 109226..109516 + 291 WP_001266178.1 hypothetical protein -
GJ28_RS22750 (109513) 109513..109977 + 465 Protein_123 cytoplasmic protein -
GJ28_RS22755 (110012) 110012..110794 + 783 WP_031570341.1 site-specific integrase -
GJ28_RS22760 (110945) 110945..111886 - 942 WP_000728920.1 Recombination-promoting nuclease RpnA VF
GJ28_RS22765 (112419) 112419..112685 + 267 WP_149027841.1 hypothetical protein -
GJ28_RS22770 (112693) 112693..113100 + 408 WP_031615774.1 hypothetical protein -
GJ28_RS22775 (113116) 113116..113706 + 591 WP_031570346.1 hypothetical protein -
GJ28_RS22780 (113799) 113799..114032 - 234 WP_254891924.1 hypothetical protein -
GJ28_RS22785 (114453) 114453..115658 + 1206 WP_000817639.1 Plasmid partition protein A VF
GJ28_RS22790 (115655) 115655..116617 + 963 WP_000756322.1 ParB family protein -
GJ28_RS22795 (116761) 116761..117930 - 1170 WP_031570353.1 translesion error-prone DNA polymerase V subunit UmuC -
GJ28_RS22800 (117930) 117930..118352 - 423 WP_031570357.1 translesion error-prone DNA polymerase V autoproteolytic subunit -
GJ28_RS22805 (118822) 118822..119682 + 861 WP_031570358.1 RepB family plasmid replication initiator protein -
GJ28_RS22810 (120210) 120210..120719 + 510 Protein_135 DNA methyltransferase -
GJ28_RS22815 (121128) 121128..122144 - 1017 WP_031570365.1 IS91 family transposase ISWz1 Transposase
GJ28_RS22820 (122137) 122137..123063 - 927 WP_031570368.1 IS91 family transposase ISTha3 Transposase
GJ28_RS22825 (123060) 123060..124007 - 948 WP_065305166.1 tyrosine-type recombinase/integrase -
GJ28_RS22830 (124130) 124130..124309 + 180 Protein_139 DNA methyltransferase -
GJ28_RS22835 (124310) 124310..124531 + 222 WP_031570375.1 hypothetical protein -
GJ28_RS22840 (124425) 124425..124977 + 553 Protein_141 DUF1380 domain-containing protein -
GJ28_RS22845 (125021) 125021..125800 + 780 WP_031570385.1 hypothetical protein -
GJ28_RS22850 (126215) 126215..126640 + 426 WP_031570388.1 antirestriction protein -
GJ28_RS22855 (126687) 126687..127106 + 420 WP_031570391.1 DUF1380 family protein -
GJ28_RS22860 (127106) 127106..127297 + 192 WP_031570393.1 hypothetical protein -
GJ28_RS22865 (127312) 127312..127626 + 315 WP_149027845.1 hypothetical protein -
GJ28_RS22870 (127862) 127862..128092 + 231 WP_031570395.1 hypothetical protein -
GJ28_RS22875 (128134) 128134..128367 + 234 WP_031570398.1 DUF905 domain-containing protein -
GJ28_RS22880 (128436) 128436..130394 + 1959 WP_031570401.1 ParB/RepB/Spo0J family partition protein -
GJ28_RS22885 (130449) 130449..130883 + 435 WP_031570423.1 conjugation system SOS inhibitor PsiB -
GJ28_RS22890 (130880) 130880..131599 + 720 Protein_151 plasmid SOS inhibition protein A -
- (131612) 131612..131827 + 216 NuclAT_0 - -
- (131612) 131612..131827 + 216 NuclAT_0 - -
- (131612) 131612..131827 + 216 NuclAT_0 - -
- (131612) 131612..131827 + 216 NuclAT_0 - -
GJ28_RS23300 (131815) 131815..131967 + 153 Protein_152 FlmC family protein -
GJ28_RS22895 (131915) 131915..132034 + 120 WP_235614409.1 Hok/Gef family protein -
GJ28_RS22900 (132271) 132271..132630 - 360 WP_199900096.1 hypothetical protein -
GJ28_RS22905 (132700) 132700..132906 + 207 WP_031570430.1 hypothetical protein -
GJ28_RS22910 (132931) 132931..133217 + 287 Protein_156 hypothetical protein -
GJ28_RS22915 (133336) 133336..134157 + 822 WP_031570432.1 DUF932 domain-containing protein -
GJ28_RS22920 (134453) 134453..135100 - 648 WP_077916032.1 hypothetical protein VF
GJ28_RS22925 (135376) 135376..135759 + 384 WP_031570436.1 conjugal transfer relaxosome DNA-binding protein TraM -
GJ28_RS22930 (135950) 135950..136597 + 648 WP_072010161.1 conjugal transfer transcriptional regulator TraJ -
GJ28_RS22935 (136733) 136733..136948 + 216 WP_000086381.1 conjugal transfer relaxosome protein TraY -
GJ28_RS22940 (136991) 136991..137356 + 366 WP_000994779.1 type IV conjugative transfer system pilin TraA -
GJ28_RS22945 (137371) 137371..137682 + 312 WP_000012106.1 type IV conjugative transfer system protein TraL -
GJ28_RS22950 (137704) 137704..138270 + 567 WP_031570441.1 type IV conjugative transfer system protein TraE -
GJ28_RS22955 (138257) 138257..138985 + 729 WP_029400178.1 type-F conjugative transfer system secretin TraK -
GJ28_RS22960 (138985) 138985..140412 + 1428 WP_031570446.1 F-type conjugal transfer pilus assembly protein TraB -
GJ28_RS22965 (140402) 140402..140986 + 585 WP_031570448.1 conjugal transfer pilus-stabilizing protein TraP -
GJ28_RS22970 (140973) 140973..141293 + 321 WP_001057291.1 DUF2689 domain-containing protein -
GJ28_RS22975 (141286) 141286..141537 + 252 WP_001038339.1 conjugal transfer protein TrbG -
GJ28_RS22980 (141534) 141534..142049 + 516 WP_000809910.1 type IV conjugative transfer system lipoprotein TraV -
GJ28_RS22985 (142184) 142184..142405 + 222 WP_031615776.1 conjugal transfer protein TraR -
GJ28_RS22990 (142398) 142398..142811 + 414 WP_031570450.1 hypothetical protein -
GJ28_RS22995 (142804) 142804..143277 + 474 WP_031570452.1 hypothetical protein -
GJ28_RS23000 (143357) 143357..143575 + 219 WP_031570454.1 hypothetical protein -
GJ28_RS23005 (143603) 143603..143964 + 362 Protein_175 hypothetical protein -
GJ28_RS23010 (144090) 144090..146720 + 2631 WP_000069755.1 type IV secretion system protein TraC -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance