MGE detailed information
MGE type: Conjugative plasmid MGE length: 147099 bp
Accession: NZ_CP075038 Location: 1..147099 Organism: Salmonella enterica subsp. enterica serovar Give strain CFSAN012622 Replicon: plasmid pCFSAN012622
Accession: NZ_CP075038 Location: 1..147099 Organism: Salmonella enterica subsp. enterica serovar Give strain CFSAN012622 Replicon: plasmid pCFSAN012622
Gene structure
The 5 kb flanking regions of this MGE are displayed.
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
GJ28_RS22160 (1) | 1..633 | + | 633 | WP_031570456.1 | type-F conjugative transfer system protein TraW | - |
GJ28_RS22165 (630) | 630..1622 | + | 993 | WP_001712363.1 | conjugal transfer pilus assembly protein TraU | - |
GJ28_RS22170 (1651) | 1651..1986 | + | 336 | WP_031570459.1 | hypothetical protein | - |
GJ28_RS22175 (1979) | 1979..2431 | + | 453 | WP_031570461.1 | hypothetical protein | - |
GJ28_RS22180 (2459) | 2459..3097 | + | 639 | WP_031570464.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
GJ28_RS22185 (3094) | 3094..4902 | + | 1809 | WP_031570468.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
GJ28_RS22190 (4929) | 4929..5158 | + | 230 | Protein_7 | conjugal transfer protein TrbE | - |
GJ28_RS22195 (5151) | 5151..5894 | + | 744 | WP_031570470.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
GJ28_RS22200 (6508) | 6508..7473 | - | 966 | WP_259399387.1 | hypothetical protein | - |
GJ28_RS22205 (7530) | 7530..7808 | + | 279 | WP_031570473.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
GJ28_RS22210 (7795) | 7795..8349 | + | 555 | WP_031570475.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
GJ28_RS22215 (8279) | 8279..8620 | + | 342 | WP_072010162.1 | P-type conjugative transfer protein TrbJ | - |
GJ28_RS22220 (8607) | 8607..8999 | + | 393 | WP_031570480.1 | F-type conjugal transfer protein TrbF | - |
GJ28_RS22225 (8986) | 8986..10359 | + | 1374 | WP_031570483.1 | conjugal transfer pilus assembly protein TraH | - |
GJ28_RS22230 (10356) | 10356..13175 | + | 2820 | WP_031570486.1 | conjugal transfer mating-pair stabilization protein TraG | - |
GJ28_RS22235 (13178) | 13178..13489 | - | 312 | WP_031570490.1 | heavy metal-binding domain-containing protein | - |
GJ28_RS22240 (13643) | 13643..14431 | + | 789 | WP_031615778.1 | hypothetical protein | - |
GJ28_RS22245 (14607) | 14607..15341 | + | 735 | WP_031570496.1 | hypothetical protein | - |
GJ28_RS22250 (15397) | 15397..17550 | + | 2154 | WP_031570500.1 | type IV conjugative transfer system coupling protein TraD | - |
GJ28_RS22255 (17559) | 17559..17957 | - | 399 | WP_001377646.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
GJ28_RS22260 (17957) | 17957..18184 | - | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
GJ28_RS22265 (18266) | 18266..23536 | + | 5271 | WP_031570504.1 | Multifunctional conjugation protein TraI | Relaxase |
GJ28_RS22270 (23602) | 23602..24033 | + | 432 | WP_031570508.1 | hypothetical protein | - |
GJ28_RS22275 (24055) | 24055..24789 | + | 735 | WP_031570511.1 | conjugal transfer pilus acetylase TraX | - |
GJ28_RS22280 (24844) | 24844..25404 | + | 561 | WP_031570514.1 | fertility inhibition protein FinO | - |
GJ28_RS23260 (25517) | 25517..25732 | + | 216 | WP_259399388.1 | hypothetical protein | - |
GJ28_RS22285 (26081) | 26081..26212 | + | 132 | WP_072134258.1 | Hok/Gef family protein | - |
GJ28_RS22290 (26494) | 26494..26751 | + | 258 | WP_031571866.1 | replication regulatory protein RepA | - |
GJ28_RS23265 (26854) | 26854..27034 | + | 181 | Protein_29 | protein CopA/IncA | - |
GJ28_RS23270 (27018) | 27018..27060 | + | 43 | Protein_30 | hypothetical protein | - |
GJ28_RS22300 (27053) | 27053..28075 | + | 1023 | WP_031571864.1 | plasmid replication initiator RepA | - |
GJ28_RS22305 (28858) | 28858..29394 | + | 537 | WP_000123884.1 | ProQ/FINO family protein | - |
GJ28_RS22310 (30211) | 30211..31149 | + | 939 | WP_220566932.1 | hypothetical protein | - |
GJ28_RS22315 (31324) | 31324..31561 | + | 238 | Protein_34 | replication regulatory protein RepA | - |
GJ28_RS23275 (31603) | 31603..31788 | + | 186 | Protein_35 | protein CopA/IncA | - |
GJ28_RS23280 (31734) | 31734..31871 | + | 138 | WP_072010155.1 | RepA leader peptide Tap | - |
GJ28_RS22325 (31899) | 31899..32567 | + | 669 | WP_049828543.1 | hypothetical protein | VF |
GJ28_RS22330 (33059) | 33059..33219 | + | 161 | Protein_38 | Tn3 family transposase TnpA_Tn3 | Transposase |
GJ28_RS22335 (33975) | 33975..34274 | + | 300 | WP_031570124.1 | Major pilu subunit operon regulatory protein PapB | VF |
GJ28_RS22340 (34282) | 34282..34815 | + | 534 | WP_031570127.1 | hypothetical protein | VF |
GJ28_RS22345 (34824) | 34824..37274 | + | 2451 | WP_049828544.1 | Outer membrane usher protein YraJ | VF |
GJ28_RS22350 (37267) | 37267..38055 | + | 789 | WP_031570135.1 | Chaperone protein FaeE | VF |
GJ28_RS22355 (38083) | 38083..38577 | + | 495 | WP_031570138.1 | hypothetical protein | VF |
GJ28_RS22360 (38811) | 38811..39611 | + | 801 | WP_259399389.1 | hypothetical protein | - |
GJ28_RS22365 (39846) | 39846..40643 | + | 798 | WP_031570144.1 | hypothetical protein | VF |
GJ28_RS22370 (40670) | 40670..41434 | + | 765 | WP_031570146.1 | hypothetical protein | VF |
GJ28_RS23285 (41421) | 41421..41810 | + | 390 | WP_259399390.1 | hypothetical protein | - |
GJ28_RS22380 (41725) | 41725..42444 | + | 720 | WP_049828551.1 | hypothetical protein | VF |
GJ28_RS22385 (42589) | 42589..43128 | + | 540 | WP_259399391.1 | hypothetical protein | - |
GJ28_RS22390 (43258) | 43258..43548 | + | 291 | WP_259399392.1 | hypothetical protein | VF |
GJ28_RS22395 (43842) | 43842..45500 | + | 1659 | WP_044126683.1 | Protein InvG | VF |
GJ28_RS22400 (45490) | 45490..46620 | + | 1131 | WP_077916028.1 | Protein MxiC | VF |
GJ28_RS22405 (46614) | 46614..48680 | + | 2067 | WP_031570162.1 | Invasion protein InvA | VF |
GJ28_RS22410 (48717) | 48717..50009 | + | 1293 | WP_031570165.1 | putative ATP synthase SpaL | VF |
GJ28_RS22415 (49993) | 49993..50460 | + | 468 | WP_031570167.1 | hypothetical protein | VF |
GJ28_RS22420 (50435) | 50435..51232 | + | 798 | WP_259399393.1 | hypothetical protein | VF |
GJ28_RS22425 (51232) | 51232..52131 | + | 900 | WP_031570171.1 | Surface presentation of antigens protein SpaO | VF |
GJ28_RS22430 (52121) | 52121..52786 | + | 666 | WP_031570173.1 | Surface presentation of antigens protein SpaP | VF |
GJ28_RS22435 (52817) | 52817..53077 | + | 261 | WP_031570176.1 | hypothetical protein | VF |
GJ28_RS22440 (53082) | 53082..53855 | + | 774 | WP_031570179.1 | Surface presentation of antigens protein SpaR | VF |
GJ28_RS22445 (53862) | 53862..54950 | + | 1089 | WP_031570181.1 | Surface presentation of antigens protein SpaS | VF |
GJ28_RS22450 (55001) | 55001..55501 | + | 501 | WP_031570184.1 | Chaperone protein SicA | VF |
GJ28_RS22455 (55494) | 55494..57221 | + | 1728 | WP_031570187.1 | Cell invasion protein SipB | VF |
GJ28_RS22460 (57251) | 57251..58234 | + | 984 | WP_072010165.1 | Cell invasion protein SipC | VF |
GJ28_RS22465 (58443) | 58443..59276 | + | 834 | Protein_65 | Cell invasion protein SipD | VF |
GJ28_RS22470 (59426) | 59426..60538 | + | 1113 | WP_259399394.1 | Protein PrgH | VF |
GJ28_RS22475 (60557) | 60557..60805 | + | 249 | WP_031570197.1 | Protein PrgI | VF |
GJ28_RS22480 (60824) | 60824..61123 | + | 300 | WP_049828546.1 | hypothetical protein | VF |
GJ28_RS22485 (61120) | 61120..61872 | + | 753 | WP_031570204.1 | Lipoprotein PrgK | VF |
GJ28_RS22490 (61865) | 61865..62461 | + | 597 | WP_049828547.1 | Oxygen-regulated invasion protein OrgA | VF |
GJ28_RS22495 (62400) | 62400..63095 | + | 696 | WP_031570210.1 | Oxygen-regulated invasion protein OrgB | VF |
GJ28_RS22500 (63411) | 63411..64106 | + | 696 | WP_159105479.1 | hypothetical protein | - |
GJ28_RS22505 (64302) | 64302..65951 | + | 1650 | WP_031570216.1 | Secreted effector protein SptP | VF |
GJ28_RS22510 (66006) | 66006..66392 | + | 387 | WP_259399395.1 | Chaperone protein sicP | VF |
GJ28_RS22515 (66625) | 66625..67089 | + | 465 | WP_149027834.1 | hypothetical protein | - |
GJ28_RS22520 (67218) | 67218..67550 | - | 333 | WP_031570225.1 | hypothetical protein | VF |
GJ28_RS22525 (68312) | 68312..69241 | + | 930 | WP_077916030.1 | hypothetical protein | VF |
GJ28_RS22530 (69723) | 69723..70316 | + | 594 | WP_149027835.1 | hypothetical protein | - |
GJ28_RS22535 (70313) | 70313..70573 | + | 261 | WP_031570237.1 | hypothetical protein | - |
GJ28_RS22540 (70596) | 70596..71741 | + | 1146 | WP_031570241.1 | hypothetical protein | - |
GJ28_RS22545 (71751) | 71751..72230 | + | 480 | WP_031570244.1 | type III secretion system chaperone | - |
GJ28_RS22550 (72218) | 72218..72670 | + | 453 | WP_049828548.1 | type III secretion system chaperone | - |
GJ28_RS22555 (72641) | 72641..73870 | - | 1230 | Protein_83 | IS3 family transposase IS2 | Transposase |
GJ28_RS22560 (74117) | 74117..74371 | - | 255 | Protein_84 | Txe/YoeB family addiction module toxin | - |
GJ28_RS22565 (74368) | 74368..74619 | - | 252 | WP_031570260.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
GJ28_RS22570 (75266) | 75266..76777 | - | 1512 | WP_031570266.1 | IS66 family transposase ISCro1 | Transposase |
GJ28_RS22575 (76797) | 76797..77144 | - | 348 | WP_031570268.1 | IS66 family transposase ISCro1 | Transposase |
GJ28_RS22580 (77144) | 77144..77821 | - | 678 | WP_031615766.1 | IS66 family transposase ISCro1 | Transposase |
GJ28_RS22585 (78257) | 78257..79024 | - | 768 | WP_149027836.1 | hypothetical protein | - |
GJ28_RS22590 (79324) | 79324..79917 | + | 594 | WP_077916035.1 | IS66 family transposase ISEc8 | Transposase |
GJ28_RS22595 (80245) | 80245..80832 | + | 588 | WP_149027837.1 | hypothetical protein | - |
GJ28_RS22600 (80890) | 80890..81117 | + | 228 | Protein_92 | IS3 family transposase | - |
GJ28_RS23290 (81217) | 81217..81324 | + | 108 | Protein_93 | antitoxin | - |
GJ28_RS22605 (81355) | 81355..81813 | - | 459 | Protein_94 | type III effector phosphothreonine lyase | - |
GJ28_RS23295 (82312) | 82312..82578 | - | 267 | Protein_95 | DsbA family protein | - |
GJ28_RS22615 (82775) | 82775..82948 | - | 174 | WP_259399396.1 | hypothetical protein | VF |
GJ28_RS22620 (83446) | 83446..84447 | - | 1002 | WP_031570277.1 | spore coat protein U domain-containing protein | - |
GJ28_RS22625 (85046) | 85046..85927 | - | 882 | WP_149027840.1 | Minor fimbrial protein PrsF | VF |
GJ28_RS22630 (86041) | 86041..86433 | - | 393 | WP_049828549.1 | hypothetical protein | - |
GJ28_RS22635 (86617) | 86617..87147 | - | 531 | WP_259399386.1 | Fimbrial protein PapE | VF |
GJ28_RS22640 (87166) | 87166..87717 | - | 552 | WP_031570283.1 | Fimbrial adapter PapK | VF |
GJ28_RS22645 (87735) | 87735..88322 | - | 588 | WP_031570286.1 | hypothetical protein | VF |
GJ28_RS22650 (88358) | 88358..89053 | - | 696 | WP_259399397.1 | Chaperone protein PapD | VF |
GJ28_RS22655 (89218) | 89218..91725 | - | 2508 | WP_031570292.1 | Outer membrane usher protein PapC | VF |
GJ28_RS22660 (91882) | 91882..92469 | - | 588 | WP_031570295.1 | PAP fimbrial minor pilin protein | VF |
GJ28_RS22665 (92551) | 92551..93063 | - | 513 | WP_031570298.1 | Pap fimbrial major pilin protein | VF |
GJ28_RS22670 (93291) | 93291..93599 | - | 309 | WP_031615770.1 | Major pilu subunit operon regulatory protein PapB | VF |
GJ28_RS22675 (94219) | 94219..94396 | + | 178 | Protein_108 | site-specific integrase | - |
GJ28_RS22680 (94381) | 94381..94620 | + | 240 | Protein_109 | Tn3 family transposase TnpR_TnEc1 | Transposase |
GJ28_RS22685 (95223) | 95223..98543 | - | 3321 | WP_031570303.1 | autotransporter domain-containing protein | - |
GJ28_RS22690 (98666) | 98666..99214 | - | 549 | WP_031570305.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
GJ28_RS22695 (99380) | 99380..100709 | + | 1330 | Protein_112 | DUF4158 domain-containing protein | - |
GJ28_RS22700 (101526) | 101526..102494 | - | 969 | WP_031570308.1 | Lipid A biosynthesis myristoyltransferase | VF |
GJ28_RS22705 (102575) | 102575..103363 | - | 789 | WP_049828550.1 | VirK/YbjX family protein | - |
GJ28_RS22710 (103522) | 103522..104628 | - | 1107 | WP_031570315.1 | glycosyltransferase family 4 protein | - |
GJ28_RS22715 (104639) | 104639..105457 | - | 819 | WP_031570318.1 | polysaccharide deacetylase family protein | - |
GJ28_RS22720 (105487) | 105487..105723 | - | 237 | WP_031570321.1 | hypothetical protein | - |
GJ28_RS22725 (105844) | 105844..106182 | - | 339 | WP_031615773.1 | Transcriptional regulatory protein RcsB | VF |
GJ28_RS22730 (107556) | 107556..108026 | - | 471 | WP_031570332.1 | DNA-binding protein | - |
GJ28_RS22735 (108699) | 108699..108917 | + | 219 | WP_031570335.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
GJ28_RS22740 (108919) | 108919..109224 | + | 306 | WP_031570338.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
GJ28_RS22745 (109226) | 109226..109516 | + | 291 | WP_001266178.1 | hypothetical protein | - |
GJ28_RS22750 (109513) | 109513..109977 | + | 465 | Protein_123 | cytoplasmic protein | - |
GJ28_RS22755 (110012) | 110012..110794 | + | 783 | WP_031570341.1 | site-specific integrase | - |
GJ28_RS22760 (110945) | 110945..111886 | - | 942 | WP_000728920.1 | Recombination-promoting nuclease RpnA | VF |
GJ28_RS22765 (112419) | 112419..112685 | + | 267 | WP_149027841.1 | hypothetical protein | - |
GJ28_RS22770 (112693) | 112693..113100 | + | 408 | WP_031615774.1 | hypothetical protein | - |
GJ28_RS22775 (113116) | 113116..113706 | + | 591 | WP_031570346.1 | hypothetical protein | - |
GJ28_RS22780 (113799) | 113799..114032 | - | 234 | WP_254891924.1 | hypothetical protein | - |
GJ28_RS22785 (114453) | 114453..115658 | + | 1206 | WP_000817639.1 | Plasmid partition protein A | VF |
GJ28_RS22790 (115655) | 115655..116617 | + | 963 | WP_000756322.1 | ParB family protein | - |
GJ28_RS22795 (116761) | 116761..117930 | - | 1170 | WP_031570353.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
GJ28_RS22800 (117930) | 117930..118352 | - | 423 | WP_031570357.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
GJ28_RS22805 (118822) | 118822..119682 | + | 861 | WP_031570358.1 | RepB family plasmid replication initiator protein | - |
GJ28_RS22810 (120210) | 120210..120719 | + | 510 | Protein_135 | DNA methyltransferase | - |
GJ28_RS22815 (121128) | 121128..122144 | - | 1017 | WP_031570365.1 | IS91 family transposase ISWz1 | Transposase |
GJ28_RS22820 (122137) | 122137..123063 | - | 927 | WP_031570368.1 | IS91 family transposase ISTha3 | Transposase |
GJ28_RS22825 (123060) | 123060..124007 | - | 948 | WP_065305166.1 | tyrosine-type recombinase/integrase | - |
GJ28_RS22830 (124130) | 124130..124309 | + | 180 | Protein_139 | DNA methyltransferase | - |
GJ28_RS22835 (124310) | 124310..124531 | + | 222 | WP_031570375.1 | hypothetical protein | - |
GJ28_RS22840 (124425) | 124425..124977 | + | 553 | Protein_141 | DUF1380 domain-containing protein | - |
GJ28_RS22845 (125021) | 125021..125800 | + | 780 | WP_031570385.1 | hypothetical protein | - |
GJ28_RS22850 (126215) | 126215..126640 | + | 426 | WP_031570388.1 | antirestriction protein | - |
GJ28_RS22855 (126687) | 126687..127106 | + | 420 | WP_031570391.1 | DUF1380 family protein | - |
GJ28_RS22860 (127106) | 127106..127297 | + | 192 | WP_031570393.1 | hypothetical protein | - |
GJ28_RS22865 (127312) | 127312..127626 | + | 315 | WP_149027845.1 | hypothetical protein | - |
GJ28_RS22870 (127862) | 127862..128092 | + | 231 | WP_031570395.1 | hypothetical protein | - |
GJ28_RS22875 (128134) | 128134..128367 | + | 234 | WP_031570398.1 | DUF905 domain-containing protein | - |
GJ28_RS22880 (128436) | 128436..130394 | + | 1959 | WP_031570401.1 | ParB/RepB/Spo0J family partition protein | - |
GJ28_RS22885 (130449) | 130449..130883 | + | 435 | WP_031570423.1 | conjugation system SOS inhibitor PsiB | - |
GJ28_RS22890 (130880) | 130880..131599 | + | 720 | Protein_151 | plasmid SOS inhibition protein A | - |
- (131612) | 131612..131827 | + | 216 | NuclAT_0 | - | - |
- (131612) | 131612..131827 | + | 216 | NuclAT_0 | - | - |
- (131612) | 131612..131827 | + | 216 | NuclAT_0 | - | - |
- (131612) | 131612..131827 | + | 216 | NuclAT_0 | - | - |
GJ28_RS23300 (131815) | 131815..131967 | + | 153 | Protein_152 | FlmC family protein | - |
GJ28_RS22895 (131915) | 131915..132034 | + | 120 | WP_235614409.1 | Hok/Gef family protein | - |
GJ28_RS22900 (132271) | 132271..132630 | - | 360 | WP_199900096.1 | hypothetical protein | - |
GJ28_RS22905 (132700) | 132700..132906 | + | 207 | WP_031570430.1 | hypothetical protein | - |
GJ28_RS22910 (132931) | 132931..133217 | + | 287 | Protein_156 | hypothetical protein | - |
GJ28_RS22915 (133336) | 133336..134157 | + | 822 | WP_031570432.1 | DUF932 domain-containing protein | - |
GJ28_RS22920 (134453) | 134453..135100 | - | 648 | WP_077916032.1 | hypothetical protein | VF |
GJ28_RS22925 (135376) | 135376..135759 | + | 384 | WP_031570436.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
GJ28_RS22930 (135950) | 135950..136597 | + | 648 | WP_072010161.1 | conjugal transfer transcriptional regulator TraJ | - |
GJ28_RS22935 (136733) | 136733..136948 | + | 216 | WP_000086381.1 | conjugal transfer relaxosome protein TraY | - |
GJ28_RS22940 (136991) | 136991..137356 | + | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
GJ28_RS22945 (137371) | 137371..137682 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
GJ28_RS22950 (137704) | 137704..138270 | + | 567 | WP_031570441.1 | type IV conjugative transfer system protein TraE | - |
GJ28_RS22955 (138257) | 138257..138985 | + | 729 | WP_029400178.1 | type-F conjugative transfer system secretin TraK | - |
GJ28_RS22960 (138985) | 138985..140412 | + | 1428 | WP_031570446.1 | F-type conjugal transfer pilus assembly protein TraB | - |
GJ28_RS22965 (140402) | 140402..140986 | + | 585 | WP_031570448.1 | conjugal transfer pilus-stabilizing protein TraP | - |
GJ28_RS22970 (140973) | 140973..141293 | + | 321 | WP_001057291.1 | DUF2689 domain-containing protein | - |
GJ28_RS22975 (141286) | 141286..141537 | + | 252 | WP_001038339.1 | conjugal transfer protein TrbG | - |
GJ28_RS22980 (141534) | 141534..142049 | + | 516 | WP_000809910.1 | type IV conjugative transfer system lipoprotein TraV | - |
GJ28_RS22985 (142184) | 142184..142405 | + | 222 | WP_031615776.1 | conjugal transfer protein TraR | - |
GJ28_RS22990 (142398) | 142398..142811 | + | 414 | WP_031570450.1 | hypothetical protein | - |
GJ28_RS22995 (142804) | 142804..143277 | + | 474 | WP_031570452.1 | hypothetical protein | - |
GJ28_RS23000 (143357) | 143357..143575 | + | 219 | WP_031570454.1 | hypothetical protein | - |
GJ28_RS23005 (143603) | 143603..143964 | + | 362 | Protein_175 | hypothetical protein | - |
GJ28_RS23010 (144090) | 144090..146720 | + | 2631 | WP_000069755.1 | type IV secretion system protein TraC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
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