MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 70795 bp
Accession: NZ_CP074427 Location: 1..70795 Organism: Salmonella sp. SJTUF15034 Replicon: plasmid p15034B
Accession: NZ_CP074427 Location: 1..70795 Organism: Salmonella sp. SJTUF15034 Replicon: plasmid p15034B
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFD68_RS23275 (KFD68_23260) | 1..819 | + | 819 | Protein_0 | DUF932 domain-containing protein | - |
| KFD68_RS23280 (KFD68_23265) | 1130..1600 | - | 471 | WP_015056628.1 | hypothetical protein | VF |
| KFD68_RS23285 (KFD68_23270) | 2016..2396 | + | 381 | WP_001151546.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| KFD68_RS23290 (KFD68_23275) | 2590..3275 | + | 686 | Protein_3 | PAS domain-containing protein | - |
| KFD68_RS23295 (KFD68_23280) | 3369..3596 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| KFD68_RS23300 (KFD68_23285) | 3638..4000 | + | 363 | WP_001274199.1 | type IV conjugative transfer system pilin TraA | - |
| KFD68_RS23305 (KFD68_23290) | 4015..4326 | + | 312 | WP_000012130.1 | type IV conjugative transfer system protein TraL | - |
| KFD68_RS23310 (KFD68_23295) | 4348..4914 | + | 567 | WP_001679518.1 | type IV conjugative transfer system protein TraE | - |
| KFD68_RS23315 (KFD68_23300) | 4901..5641 | + | 741 | WP_001230718.1 | type-F conjugative transfer system secretin TraK | - |
| KFD68_RS23320 (KFD68_23305) | 5641..7062 | + | 1422 | WP_000146697.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| KFD68_RS23325 (KFD68_23310) | 7052..7648 | + | 597 | WP_000527901.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| KFD68_RS23330 (KFD68_23315) | 7626..7850 | + | 225 | WP_016716015.1 | DUF2689 domain-containing protein | - |
| KFD68_RS23335 (KFD68_23320) | 7847..8361 | + | 515 | Protein_12 | type IV conjugative transfer system lipoprotein TraV | - |
| KFD68_RS23340 (KFD68_23325) | 8441..8863 | + | 423 | Protein_13 | fertility inhibition protein FinO | - |
| KFD68_RS24050 | 8980..9261 | + | 282 | Protein_14 | disulfide bond formation protein DsbA | - |
| KFD68_RS24055 | 9542..10102 | + | 561 | Protein_15 | phospholipase D family protein | - |
| KFD68_RS23360 (KFD68_23345) | 10213..10479 | + | 267 | WP_016710725.1 | replication regulatory protein RepA | - |
| KFD68_RS23365 (KFD68_23350) | 10729..10806 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| KFD68_RS23370 (KFD68_23355) | 10787..11668 | + | 882 | WP_001676666.1 | incFII family plasmid replication initiator RepA | - |
| KFD68_RS23375 (KFD68_23360) | 12551..12745 | + | 195 | Protein_19 | SdiA-regulated domain-containing protein | - |
| KFD68_RS23380 (KFD68_23365) | 12842..13588 | - | 747 | WP_000417897.1 | AraC family transcriptional regulator | - |
| KFD68_RS23385 (KFD68_23370) | 13854..14411 | - | 558 | WP_000725064.1 | Attachment invasion locus protein | VF |
| KFD68_RS23390 (KFD68_23375) | 14501..15346 | - | 846 | WP_001701740.1 | YjiK family protein | - |
| KFD68_RS23395 (KFD68_23380) | 15397..15543 | - | 147 | WP_001141717.1 | hypothetical protein | - |
| KFD68_RS23400 (KFD68_23385) | 15533..16189 | - | 657 | WP_077907617.1 | DsbA family protein | - |
| KFD68_RS23405 (KFD68_23390) | 16433..16783 | - | 351 | WP_000135399.1 | Transcriptional regulatory protein RcsB | VF |
| KFD68_RS23410 (KFD68_23395) | 16768..16980 | - | 213 | WP_000004289.1 | hypothetical protein | VF |
| KFD68_RS23415 (KFD68_23400) | 17240..18181 | - | 942 | WP_223156944.1 | hypothetical protein | - |
| KFD68_RS23420 (KFD68_23405) | 18277..18855 | - | 579 | WP_000085742.1 | hypothetical protein | - |
| KFD68_RS23425 (KFD68_23410) | 18852..19544 | - | 693 | WP_001038509.1 | Chaperone protein FaeE | VF |
| KFD68_RS23430 (KFD68_23415) | 19537..21945 | - | 2409 | WP_000007891.1 | Outer membrane usher protein FimD | VF |
| KFD68_RS23435 (KFD68_23420) | 22172..22696 | - | 525 | WP_000748204.1 | hypothetical protein | VF |
| KFD68_RS23440 (KFD68_23425) | 22971..23273 | - | 303 | WP_000979451.1 | Major pilu subunit operon regulatory protein PapB | VF |
| KFD68_RS23445 (KFD68_23430) | 23302..23613 | + | 312 | WP_015059605.1 | hypothetical protein | - |
| KFD68_RS23450 (KFD68_23435) | 23980..24366 | + | 387 | WP_000751876.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| KFD68_RS23455 (KFD68_23440) | 24419..24538 | + | 120 | Protein_35 | recombinase | - |
| KFD68_RS23460 (KFD68_23445) | 24907..25896 | - | 990 | WP_000461382.1 | RepB family plasmid replication initiator protein | - |
| KFD68_RS23465 (KFD68_23450) | 26390..26685 | - | 296 | Protein_37 | cytoplasmic protein | - |
| KFD68_RS23470 (KFD68_23455) | 26697..27125 | + | 429 | Protein_38 | hypothetical protein | - |
| KFD68_RS23475 (KFD68_23460) | 27169..27690 | - | 522 | WP_077681952.1 | hypothetical protein | - |
| KFD68_RS23480 (KFD68_23465) | 28366..28584 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| KFD68_RS23485 (KFD68_23470) | 28586..28891 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| KFD68_RS23490 (KFD68_23475) | 28893..29183 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| KFD68_RS23495 (KFD68_23480) | 29180..29701 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| KFD68_RS23500 (KFD68_23485) | 29736..30518 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| KFD68_RS23505 (KFD68_23490) | 30527..31240 | + | 714 | WP_121212594.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| KFD68_RS23510 (KFD68_23495) | 31265..31753 | + | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| KFD68_RS23515 (KFD68_23500) | 31747..32232 | + | 486 | WP_000905606.1 | membrane protein | - |
| KFD68_RS23520 (KFD68_23505) | 32509..32796 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| KFD68_RS23525 (KFD68_23510) | 32952..33512 | + | 561 | WP_000900095.1 | Invasin | VF |
| KFD68_RS23530 (KFD68_23515) | 33579..33929 | - | 351 | WP_001541541.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| KFD68_RS23535 (KFD68_23520) | 33986..34411 | + | 426 | WP_213680248.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| KFD68_RS23540 (KFD68_23525) | 34538..35188 | - | 651 | WP_001676646.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| KFD68_RS23545 (KFD68_23530) | 35502..36491 | - | 990 | WP_000461382.1 | RepB family plasmid replication initiator protein | - |
| KFD68_RS23550 (KFD68_23535) | 36985..37280 | - | 296 | Protein_54 | cytoplasmic protein | - |
| KFD68_RS23555 (KFD68_23540) | 37292..37720 | + | 429 | Protein_55 | hypothetical protein | - |
| KFD68_RS23560 (KFD68_23545) | 37764..38285 | - | 522 | WP_077681952.1 | hypothetical protein | - |
| KFD68_RS23565 (KFD68_23550) | 38961..39179 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| KFD68_RS23570 (KFD68_23555) | 39181..39486 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| KFD68_RS23575 (KFD68_23560) | 39488..39778 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| KFD68_RS23580 (KFD68_23565) | 39775..40296 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| KFD68_RS23585 (KFD68_23570) | 40331..41113 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| KFD68_RS23590 (KFD68_23575) | 41122..41835 | + | 714 | WP_121212594.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| KFD68_RS23595 (KFD68_23580) | 41860..42348 | + | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| KFD68_RS23600 (KFD68_23585) | 42342..42827 | + | 486 | WP_000905606.1 | membrane protein | - |
| KFD68_RS23605 (KFD68_23590) | 43104..43391 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| KFD68_RS23610 (KFD68_23595) | 43547..44107 | + | 561 | WP_000900095.1 | Invasin | VF |
| KFD68_RS23615 (KFD68_23600) | 44174..44524 | - | 351 | WP_001541541.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| KFD68_RS23620 (KFD68_23605) | 44581..45006 | + | 426 | WP_000064919.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| KFD68_RS23625 (KFD68_23610) | 45133..45783 | - | 651 | WP_001676646.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| KFD68_RS23630 (KFD68_23615) | 46045..46770 | - | 726 | WP_001122242.1 | MAPK phosphothreonine lyase | VF |
| KFD68_RS23635 (KFD68_23620) | 47051..48826 | - | 1776 | WP_001676648.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| KFD68_RS23640 (KFD68_23625) | 48878..49045 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| KFD68_RS23645 (KFD68_23630) | 49008..49775 | - | 768 | WP_001676649.1 | virulence protein SpvA | - |
| KFD68_RS23650 (KFD68_23635) | 49949..50113 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| KFD68_RS23655 (KFD68_23640) | 50287..51180 | - | 894 | WP_000346690.1 | virulence genes transcriptional activator SpvR | - |
| KFD68_RS23660 (KFD68_23645) | 51788..52825 | + | 1038 | WP_001121400.1 | IS630 family transposase ISEc33 | Transposase |
| KFD68_RS23665 (KFD68_23650) | 53014..54039 | - | 1026 | WP_077907510.1 | ExeA family protein | - |
| KFD68_RS23670 (KFD68_23655) | 53972..55636 | - | 1665 | WP_000098781.1 | IS481 family transposase ISAzs36 | Transposase |
| KFD68_RS23675 (KFD68_23660) | 55620..55898 | - | 279 | Protein_79 | Tn3 family transposase TnpR_ISMex38 | Transposase |
| KFD68_RS23680 (KFD68_23665) | 55949..56653 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| KFD68_RS23685 (KFD68_23670) | 56718..57008 | - | 291 | Protein_81 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| KFD68_RS23690 (KFD68_23675) | 57215..57955 | - | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| KFD68_RS23695 (KFD68_23680) | 58610..59098 | - | 489 | WP_001135409.1 | hypothetical protein | - |
| KFD68_RS23700 (KFD68_23685) | 59356..60471 | + | 1116 | WP_001247117.1 | DNA-binding protein | - |
| KFD68_RS23705 (KFD68_23690) | 60557..60973 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| KFD68_RS23710 (KFD68_23695) | 61076..61492 | + | 417 | WP_000988946.1 | hypothetical protein | - |
| KFD68_RS23715 (KFD68_23700) | 61549..62154 | + | 606 | WP_000176303.1 | DUF2913 family protein | - |
| KFD68_RS23720 (KFD68_23705) | 62151..63092 | - | 942 | WP_000728919.1 | Recombination-promoting nuclease RpnA | VF |
| KFD68_RS23725 (KFD68_23710) | 63507..64712 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| KFD68_RS23730 (KFD68_23715) | 64712..65686 | + | 975 | WP_000064277.1 | ParB family protein | - |
| KFD68_RS23735 (KFD68_23720) | 65768..67042 | - | 1275 | WP_000457542.1 | Y-family DNA polymerase | - |
| KFD68_RS23740 (KFD68_23725) | 67042..67464 | - | 423 | WP_000925628.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| KFD68_RS23745 (KFD68_23730) | 67765..69486 | + | 1722 | Protein_93 | ParB/RepB/Spo0J family partition protein | - |
| KFD68_RS24060 | 69526..69627 | + | 102 | Protein_94 | conjugation system SOS inhibitor PsiB family protein | - |
| KFD68_RS23755 (KFD68_23740) | 69630..70286 | + | 657 | Protein_95 | plasmid SOS inhibition protein A | - |
| KFD68_RS24115 | 70321..70449 | + | 129 | WP_000372430.1 | hypothetical protein | - |
| KFD68_RS23760 (KFD68_23745) | 70535..70693 | + | 159 | WP_001704449.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|