MGE detailed information
MGE type: Conjugative plasmid MGE length: 110400 bp
Accession: NZ_CP074123 Location: 1..110400 Organism: Escherichia coli strain EC16 Replicon: plasmid pEC16-3
Accession: NZ_CP074123 Location: 1..110400 Organism: Escherichia coli strain EC16 Replicon: plasmid pEC16-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KGQ53_RS24410 (46) | 46..1077 | + | 1032 | WP_044706701.1 | plasmid replication initiator RepA | - |
| KGQ53_RS24415 (1986) | 1986..2255 | + | 270 | WP_032181987.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| KGQ53_RS24420 (2255) | 2255..2533 | + | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| KGQ53_RS24425 (2573) | 2573..3421 | + | 849 | WP_001057996.1 | 3'-5' exonuclease | - |
| KGQ53_RS24430 (3538) | 3538..4011 | + | 474 | WP_077128838.1 | hypothetical protein | - |
| KGQ53_RS24435 (4488) | 4488..4754 | - | 267 | WP_000627831.1 | hypothetical protein | - |
| KGQ53_RS24440 (4754) | 4754..5248 | - | 495 | WP_001350009.1 | hypothetical protein | - |
| KGQ53_RS24445 (5304) | 5304..5906 | - | 603 | WP_045133169.1 | ProQ/FINO family protein | - |
| KGQ53_RS24450 (6260) | 6260..7606 | + | 1347 | WP_001132021.1 | protein YagA | - |
| KGQ53_RS24455 (7885) | 7885..9765 | + | 1881 | WP_032221836.1 | colicin Ia central receptor-binding domain-containing protein | - |
| KGQ53_RS24460 (9782) | 9782..10117 | - | 336 | WP_045133168.1 | colicin E1 family microcin immunity protein | - |
| KGQ53_RS24465 (10246) | 10246..10593 | + | 348 | WP_000142443.1 | DUF6404 family protein | - |
| KGQ53_RS24470 (10611) | 10611..11201 | - | 591 | WP_045133249.1 | hypothetical protein | - |
| KGQ53_RS24475 (11201) | 11201..11458 | - | 258 | WP_000371887.1 | hypothetical protein | - |
| KGQ53_RS24480 (11787) | 11787..12239 | + | 453 | WP_000670961.1 | dTDP-3-amino-3,6-dideoxy-alpha-D-galactopyranose 3-N-acetyltransferase | VF |
| KGQ53_RS24485 (12349) | 12349..12804 | - | 456 | WP_045133248.1 | IS200-IS605 family transposase IS200C | Transposase |
| KGQ53_RS24490 (13022) | 13022..13504 | - | 483 | WP_066019395.1 | hypothetical protein | - |
| KGQ53_RS24495 (13997) | 13997..14419 | - | 423 | WP_045133246.1 | Protein AggB | VF |
| KGQ53_RS24500 (14436) | 14436..16994 | - | 2559 | WP_283247477.1 | F1 capsule-anchoring protein | VF |
| KGQ53_RS24505 (17122) | 17122..17877 | - | 756 | WP_024198451.1 | Chaperone protein caf1M | VF |
| KGQ53_RS24510 (18066) | 18066..18275 | - | 210 | WP_000929752.1 | Major pilu subunit operon regulatory protein PapB | VF |
| KGQ53_RS24515 (19099) | 19099..19886 | + | 788 | Protein_21 | site-specific integrase | - |
| KGQ53_RS24520 (20059) | 20059..20412 | + | 354 | WP_000864815.1 | colicin M immunity protein | - |
| KGQ53_RS24525 (20462) | 20462..20608 | - | 147 | Protein_23 | lipid II-degrading bacteriocin | - |
| KGQ53_RS24530 (21298) | 21298..21645 | + | 348 | WP_000142450.1 | DUF6404 family protein | - |
| KGQ53_RS24535 (21663) | 21663..21848 | - | 186 | Protein_25 | hypothetical protein | - |
| KGQ53_RS24540 (22074) | 22074..25889 | + | 3816 | WP_249344233.1 | hypothetical protein | - |
| KGQ53_RS24545 (26523) | 26523..26792 | + | 270 | WP_001168933.1 | hypothetical protein | - |
| KGQ53_RS24550 (26785) | 26785..27474 | + | 690 | WP_000796232.1 | hypothetical protein | - |
| KGQ53_RS24555 (27471) | 27471..28259 | + | 789 | WP_000016498.1 | site-specific integrase | - |
| KGQ53_RS24560 (28439) | 28439..29083 | + | 645 | WP_001144036.1 | ParA family protein | - |
| KGQ53_RS24565 (29170) | 29170..29478 | + | 309 | WP_000048808.1 | hypothetical protein | - |
| KGQ53_RS24570 (29892) | 29892..30872 | + | 981 | WP_045133365.1 | plasmid segregation protein ParM | - |
| KGQ53_RS24575 (30865) | 30865..31281 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| KGQ53_RS24580 (31283) | 31283..32557 | - | 1275 | WP_000457524.1 | Y-family DNA polymerase | - |
| KGQ53_RS24585 (32557) | 32557..32994 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| KGQ53_RS24590 (32991) | 32991..33239 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| KGQ53_RS24595 (33657) | 33657..34559 | + | 903 | WP_077872020.1 | DUF1281 domain-containing protein | - |
| KGQ53_RS24600 (34556) | 34556..34867 | + | 312 | WP_032143956.1 | hypothetical protein | - |
| KGQ53_RS24605 (34943) | 34943..35626 | + | 684 | WP_045133339.1 | DNA methylase | - |
| KGQ53_RS24610 (35627) | 35627..35848 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| KGQ53_RS24615 (35829) | 35829..36296 | + | 468 | WP_223230041.1 | DUF1380 family protein | - |
| KGQ53_RS24620 (36341) | 36341..37111 | + | 771 | WP_045133340.1 | hypothetical protein | - |
| KGQ53_RS24625 (37529) | 37529..37954 | + | 426 | WP_001198908.1 | antirestriction protein | - |
| KGQ53_RS24630 (38001) | 38001..38423 | + | 423 | WP_045133341.1 | DUF1380 family protein | - |
| KGQ53_RS24635 (38420) | 38420..38611 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| KGQ53_RS24645 (39381) | 39381..39908 | + | 528 | WP_001276121.1 | single-stranded DNA-binding protein | - |
| KGQ53_RS24650 (39965) | 39965..40198 | + | 234 | WP_001042948.1 | DUF905 domain-containing protein | - |
| KGQ53_RS24655 (40260) | 40260..42218 | + | 1959 | WP_045133370.1 | ParB/RepB/Spo0J family partition protein | - |
| KGQ53_RS24660 (42273) | 42273..42707 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| KGQ53_RS24665 (42704) | 42704..43423 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| KGQ53_RS24670 (43420) | 43420..44016 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| KGQ53_RS24675 (44479) | 44479..44979 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| KGQ53_RS24680 (45708) | 45708..46142 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| KGQ53_RS24685 (46236) | 46236..46502 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| KGQ53_RS24690 (46567) | 46567..47445 | + | 879 | WP_000038331.1 | Recombination-promoting nuclease RpnA | VF |
| KGQ53_RS24695 (47507) | 47507..47713 | + | 207 | WP_001532090.1 | hypothetical protein | VF |
| KGQ53_RS24700 (47744) | 47744..47995 | - | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| KGQ53_RS26005 (48104) | 48104..48331 | - | 228 | WP_001455299.1 | hypothetical protein | - |
| KGQ53_RS24710 (48575) | 48575..49423 | + | 849 | WP_001077032.1 | DUF4942 domain-containing protein | - |
| KGQ53_RS24715 (49509) | 49509..49844 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| KGQ53_RS24720 (50078) | 50078..50410 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| KGQ53_RS24725 (50421) | 50421..53120 | + | 2700 | WP_039005629.1 | Protein TraI | Relaxase |
| KGQ53_RS24730 (53146) | 53146..53718 | + | 573 | WP_000332079.1 | hypothetical protein | - |
| KGQ53_RS24735 (53768) | 53768..54139 | - | 372 | Protein_64 | Toxin RTX-I translocation ATP-binding protein | VF |
| KGQ53_RS24745 (55419) | 55419..57293 | - | 1875 | WP_249344234.1 | peptidase domain-containing ABC transporter | - |
| KGQ53_RS24750 (57293) | 57293..58546 | - | 1254 | WP_001685252.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| KGQ53_RS26010 (58649) | 58649..59011 | - | 363 | WP_085004988.1 | CPBP family intramembrane metalloprotease | - |
| KGQ53_RS24760 (60069) | 60069..62360 | - | 2292 | WP_212639657.1 | F-type conjugative transfer protein TrbC | - |
| KGQ53_RS24765 (62353) | 62353..63423 | - | 1071 | WP_039005625.1 | IncI1-type conjugal transfer protein TrbB | - |
| KGQ53_RS24770 (63442) | 63442..64650 | - | 1209 | WP_212639658.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (64830) | 64830..64892 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (64830) | 64830..64892 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (64830) | 64830..64892 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (64830) | 64830..64892 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| KGQ53_RS24775 (64942) | 64942..65094 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| KGQ53_RS24780 (65166) | 65166..65417 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| KGQ53_RS26190 (65916) | 65916..66011 | + | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| KGQ53_RS24785 (66076) | 66076..66252 | - | 177 | WP_001054898.1 | hypothetical protein | - |
| KGQ53_RS24790 (66644) | 66644..66853 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| KGQ53_RS24795 (66925) | 66925..67575 | - | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| KGQ53_RS24800 (67649) | 67649..69817 | - | 2169 | WP_000698357.1 | DotA/TraY family protein | - |
| KGQ53_RS24805 (69914) | 69914..70498 | - | 585 | WP_001476649.1 | IncI1-type conjugal transfer protein TraX | - |
| KGQ53_RS24810 (70527) | 70527..71729 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| KGQ53_RS24815 (71696) | 71696..72310 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| KGQ53_RS24820 (72310) | 72310..75354 | - | 3045 | WP_001024782.1 | IncI1-type conjugal transfer protein TraU | - |
| KGQ53_RS24825 (75444) | 75444..76244 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| KGQ53_RS24830 (76228) | 76228..76416 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| KGQ53_RS24835 (76480) | 76480..76884 | - | 405 | WP_021497835.1 | IncI1-type conjugal transfer protein TraR | - |
| KGQ53_RS24840 (76935) | 76935..77462 | - | 528 | WP_045133141.1 | conjugal transfer protein TraQ | - |
| KGQ53_RS24845 (77462) | 77462..78166 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| KGQ53_RS24850 (78166) | 78166..79455 | - | 1290 | WP_001271991.1 | conjugal transfer protein TraO | - |
| KGQ53_RS24855 (79458) | 79458..80441 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| KGQ53_RS24860 (80452) | 80452..81144 | - | 693 | WP_000138551.1 | DotI/IcmL family type IV secretion protein | - |
| KGQ53_RS24865 (81141) | 81141..81488 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| KGQ53_RS24870 (81506) | 81506..85270 | - | 3765 | WP_045133142.1 | DUF5710 domain-containing protein | - |
| KGQ53_RS24875 (85360) | 85360..85911 | - | 552 | WP_000014586.1 | Phospholipase D | VF |
| KGQ53_RS24880 (85926) | 85926..86216 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| KGQ53_RS24885 (86213) | 86213..87361 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| KGQ53_RS24890 (87358) | 87358..88176 | - | 819 | WP_032220737.1 | hypothetical protein | VF |
| KGQ53_RS24895 (88173) | 88173..88631 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| KGQ53_RS24900 (89026) | 89026..89610 | - | 585 | WP_045133143.1 | lipopolysaccharide core heptose(II)-phosphate phosphatase | - |
| KGQ53_RS24905 (89670) | 89670..90872 | - | 1203 | WP_212639659.1 | conjugal transfer protein TraF | - |
| KGQ53_RS24910 (90958) | 90958..91782 | - | 825 | WP_001690630.1 | conjugal transfer protein TraE | - |
| KGQ53_RS24915 (91933) | 91933..93087 | - | 1155 | WP_001139955.1 | site-specific integrase | - |
| KGQ53_RS26020 (93086) | 93086..93439 | + | 354 | WP_001393368.1 | hypothetical protein | - |
| KGQ53_RS24935 (94721) | 94721..96157 | - | 1437 | WP_015058206.1 | hypothetical protein | VF |
| KGQ53_RS24940 (96145) | 96145..96801 | - | 657 | WP_001193549.1 | hypothetical protein | VF |
| KGQ53_RS24945 (96786) | 96786..97346 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| KGQ53_RS24950 (97356) | 97356..97970 | - | 615 | WP_000908226.1 | hypothetical protein | VF |
| KGQ53_RS24955 (97987) | 97987..99072 | - | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| KGQ53_RS24960 (99085) | 99085..100638 | - | 1554 | WP_000362206.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| KGQ53_RS24965 (100649) | 100649..101101 | - | 453 | WP_001247337.1 | hypothetical protein | VF |
| KGQ53_RS24970 (101088) | 101088..102383 | - | 1296 | WP_000752780.1 | type 4b pilus protein PilO2 | - |
| KGQ53_RS24975 (102376) | 102376..104058 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| KGQ53_RS24980 (104072) | 104072..104509 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| KGQ53_RS24985 (104509) | 104509..105576 | - | 1068 | WP_001360287.1 | hypothetical protein | VF |
| KGQ53_RS24990 (106548) | 106548..106967 | - | 420 | WP_072115345.1 | PilI type IV pilus biogenesis protein | - |
| KGQ53_RS24995 (107094) | 107094..107777 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| KGQ53_RS25000 (108030) | 108030..108563 | - | 534 | WP_001306770.1 | transcription termination/antitermination NusG family protein | - |
| KGQ53_RS25005 (109005) | 109005..109292 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| KGQ53_RS25010 (109210) | 109210..109488 | - | 279 | WP_219065241.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|