MGE detailed information
MGE type: Prophage MGE length: 21707 bp
Accession: NZ_CP072986 Location: 2233302..2255008 Organism: Escherichia coli strain T159A Replicon: chromosome
Accession: NZ_CP072986 Location: 2233302..2255008 Organism: Escherichia coli strain T159A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KBW97_RS10665 (2228553) | 2228553..2229263 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| KBW97_RS10670 (2229266) | 2229266..2229826 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| KBW97_RS10675 (2229861) | 2229861..2230202 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| KBW97_RS10680 (2230337) | 2230337..2230663 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| KBW97_RS10685 (2230869) | 2230869..2232083 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| KBW97_RS10690 (2232095) | 2232095..2233114 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| KBW97_RS10700 (2233302) | 2233302..2234459 | - | 1158 | Protein_2111 | Tyrosine recombinase XerD ; Integrase | Integrase |
| KBW97_RS10705 (2234473) | 2234473..2235168 | - | 696 | Protein_2112 | IS3 family transposase IS2 | Transposase |
| KBW97_RS10710 (2235165) | 2235165..2235932 | - | 768 | Protein_2113 | exonuclease | - |
| KBW97_RS10715 (2236025) | 2236025..2236216 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| KBW97_RS10720 (2236213) | 2236213..2236401 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| KBW97_RS10725 (2236969) | 2236969..2237187 | - | 219 | WP_001171942.1 | protein YdfC | - |
| KBW97_RS23475 (2237217) | 2237217..2237345 | - | 129 | WP_000344964.1 | protein YdfB | - |
| KBW97_RS10730 (2237347) | 2237347..2237502 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| KBW97_RS10735 (2237669) | 2237669..2238076 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| KBW97_RS10740 (2238160) | 2238160..2238390 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| KBW97_RS10745 (2238374) | 2238374..2238652 | + | 279 | Protein_2121 | protein YdfX | - |
| KBW97_RS10750 (2238687) | 2238687..2238836 | + | 150 | WP_011443592.1 | protein YdfW | - |
| KBW97_RS10755 (2239273) | 2239273..2239605 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| KBW97_RS10760 (2239808) | 2239808..2240113 | - | 306 | WP_001326990.1 | protein YdfV | - |
| KBW97_RS10765 (2240138) | 2240138..2240377 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| KBW97_RS10770 (2240377) | 2240377..2240664 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| KBW97_RS10775 (2240736) | 2240736..2240891 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| KBW97_RS10780 (2241108) | 2241108..2241359 | + | 252 | WP_000980994.1 | protein Rem | - |
| KBW97_RS10785 (2241426) | 2241426..2241704 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| KBW97_RS10790 (2241706) | 2241706..2242755 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| KBW97_RS10795 (2242769) | 2242769..2243521 | + | 753 | WP_001047135.1 | antitermination protein | - |
| KBW97_RS10800 (2243799) | 2243799..2243888 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| KBW97_RS10805 (2243943) | 2243943..2244155 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| KBW97_RS10810 (2244456) | 2244456..2244671 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| KBW97_RS23195 (2245035) | 2245035..2245205 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| KBW97_RS10815 (2245425) | 2245425..2245640 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| KBW97_RS10820 (2245645) | 2245645..2245956 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| KBW97_RS10825 (2245953) | 2245953..2246486 | + | 534 | WP_001092971.1 | lysozyme | - |
| KBW97_RS10830 (2246483) | 2246483..2246980 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| KBW97_RS10835 (2247343) | 2247343..2247555 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| KBW97_RS10840 (2247566) | 2247566..2247754 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| KBW97_RS10845 (2247757) | 2247757..2247822 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| KBW97_RS10850 (2247901) | 2247901..2248056 | + | 156 | WP_001309517.1 | protein YnfN | - |
| KBW97_RS10855 (2248228) | 2248228..2248401 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| KBW97_RS10860 (2248553) | 2248553..2248963 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| KBW97_RS10865 (2249021) | 2249021..2249254 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| KBW97_RS10870 (2249643) | 2249643..2250212 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| KBW97_RS10875 (2250163) | 2250163..2251125 | + | 963 | WP_001027733.1 | phage tail protein | - |
| KBW97_RS10880 (2251125) | 2251125..2251700 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| KBW97_RS10885 (2251798) | 2251798..2252388 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| KBW97_RS10890 (2252705) | 2252705..2252938 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| KBW97_RS10895 (2253007) | 2253007..2253120 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| KBW97_RS10900 (2253641) | 2253641..2255008 | + | 1368 | Protein_2153 | MHS family MFS transporter | - |
| KBW97_RS10905 (2255097) | 2255097..2256557 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| KBW97_RS10910 (2256592) | 2256592..2256795 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| KBW97_RS10915 (2256972) | 2256972..2257658 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| KBW97_RS10920 (2257747) | 2257747..2258493 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |