MGE detailed information
MGE type: Conjugative plasmid MGE length: 88572 bp
Accession: NZ_CP071443 Location: 1..88572 Organism: Escherichia coli strain EcPF20 Replicon: plasmid p2
Accession: NZ_CP071443 Location: 1..88572 Organism: Escherichia coli strain EcPF20 Replicon: plasmid p2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J1F34_RS23910 () | 46..1077 | + | 1032 | WP_000907852.1 | replication initiation protein | - |
| J1F34_RS23915 () | 1981..2265 | + | 285 | WP_001178087.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| J1F34_RS23920 () | 2265..2540 | + | 276 | WP_000421259.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| J1F34_RS23925 () | 2646..2927 | + | 282 | WP_001105066.1 | hypothetical protein | - |
| J1F34_RS23930 () | 3119..3385 | - | 267 | WP_000627832.1 | hypothetical protein | - |
| J1F34_RS23935 () | 3385..3879 | - | 495 | WP_077127980.1 | hypothetical protein | - |
| J1F34_RS23940 () | 3935..4537 | - | 603 | WP_061671620.1 | proQ/FINO family protein | - |
| J1F34_RS23945 () | 4891..6237 | + | 1347 | WP_001132027.1 | hypothetical protein | - |
| J1F34_RS23950 () | 6516..8396 | + | 1881 | WP_061671619.1 | colicin | - |
| J1F34_RS23955 () | 8414..8761 | - | 348 | WP_016232722.1 | hypothetical protein | - |
| J1F34_RS23960 () | 8880..9227 | + | 348 | WP_000142441.1 | hypothetical protein | - |
| J1F34_RS23965 () | 9245..9835 | - | 591 | WP_000194574.1 | hypothetical protein | - |
| J1F34_RS23970 () | 9835..10092 | - | 258 | WP_000343085.1 | hypothetical protein | - |
| J1F34_RS23975 () | 10661..11074 | + | 414 | WP_000465036.1 | hypothetical protein | - |
| J1F34_RS23980 () | 11076..11855 | + | 780 | WP_001199724.1 | site-specific integrase | - |
| J1F34_RS23985 () | 12035..12679 | + | 645 | WP_001144036.1 | ParA family protein | - |
| J1F34_RS23990 () | 12766..13074 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| J1F34_RS23995 () | 13488..14468 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| J1F34_RS24000 () | 14461..14877 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| J1F34_RS24005 () | 14879..16153 | - | 1275 | WP_015058887.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| J1F34_RS24010 () | 16153..16590 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| J1F34_RS24015 () | 16587..16835 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| J1F34_RS24020 () | 17253..18155 | + | 903 | WP_072748703.1 | DUF1281 domain-containing protein | - |
| J1F34_RS24025 () | 18159..18464 | + | 306 | WP_015058890.1 | hypothetical protein | - |
| J1F34_RS24030 () | 18540..19223 | + | 684 | WP_000086160.1 | DNA methylase | - |
| J1F34_RS24035 () | 19224..19445 | + | 222 | WP_021560304.1 | hypothetical protein | - |
| J1F34_RS24040 () | 19458..19892 | + | 435 | WP_061671618.1 | DUF1380 family protein | - |
| J1F34_RS24045 () | 19938..20714 | + | 777 | WP_061671617.1 | hypothetical protein | - |
| J1F34_RS24050 () | 21248..21550 | + | 303 | WP_075207376.1 | antirestriction protein | - |
| J1F34_RS24055 () | 21597..22019 | + | 423 | WP_061671614.1 | DUF1380 family protein | - |
| J1F34_RS24060 () | 22016..22207 | + | 192 | WP_001697954.1 | hypothetical protein | - |
| J1F34_RS24065 () | 22278..22592 | + | 315 | WP_024199621.1 | hypothetical protein | - |
| J1F34_RS24070 () | 22976..23503 | + | 528 | WP_053264372.1 | single-stranded DNA-binding protein | - |
| J1F34_RS24075 () | 23560..23793 | + | 234 | WP_061671613.1 | DUF905 domain-containing protein | - |
| J1F34_RS24080 () | 23855..25813 | + | 1959 | WP_207268793.1 | ParB N-terminal domain-containing protein | - |
| J1F34_RS24085 () | 25868..26302 | + | 435 | WP_000845900.1 | conjugation system SOS inhibitor PsiB | - |
| J1F34_RS24090 () | 26299..27018 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| J1F34_RS24095 () | 27148..28323 | + | 1176 | WP_061671611.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| J1F34_RS24100 () | 28771..29271 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| J1F34_RS24105 () | 30000..30434 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| J1F34_RS24110 () | 30527..30793 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| J1F34_RS24115 () | 30858..31748 | + | 891 | WP_000038399.1 | Recombination-promoting nuclease RpnA | VF |
| J1F34_RS24120 () | 31811..32005 | + | 195 | WP_061671610.1 | hypothetical protein | VF |
| J1F34_RS24125 () | 32036..32287 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| J1F34_RS24130 () | 32321..32518 | - | 198 | WP_077127992.1 | hypothetical protein | - |
| J1F34_RS24135 () | 32868..33716 | + | 849 | WP_021513954.1 | DUF4942 domain-containing protein | - |
| J1F34_RS24140 () | 33802..34137 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| J1F34_RS24145 () | 34371..34703 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| J1F34_RS24150 () | 34714..37413 | + | 2700 | WP_011264053.1 | Protein TraI | Relaxase |
| J1F34_RS24155 () | 37450..39741 | - | 2292 | WP_072107381.1 | conjugal transfer protein TrbC | - |
| J1F34_RS24160 () | 39734..40804 | - | 1071 | WP_000151579.1 | IncI1-type conjugal transfer protein TrbB | - |
| J1F34_RS24165 () | 40823..42031 | - | 1209 | WP_001383960.1 | IncI1-type conjugal transfer protein TrbA | - |
| J1F34_RS24170 () | 42249..43235 | - | 987 | WP_001257838.1 | hypothetical protein | - |
| - () | 43396..43453 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 43396..43453 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 43396..43453 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 43396..43453 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| J1F34_RS24175 () | 43508..43660 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| J1F34_RS24180 () | 43732..43983 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| J1F34_RS24185 () | 44642..44818 | - | 177 | WP_001054901.1 | hypothetical protein | - |
| J1F34_RS24190 () | 45150..45359 | + | 210 | WP_000062602.1 | HEAT repeat domain-containing protein | - |
| J1F34_RS24195 () | 45431..46093 | - | 663 | WP_000644792.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| J1F34_RS24200 () | 46158..48326 | - | 2169 | WP_077250315.1 | DotA/TraY family protein | - |
| J1F34_RS24205 () | 48423..49007 | - | 585 | WP_001037996.1 | IncI1-type conjugal transfer protein TraX | - |
| J1F34_RS24210 () | 49036..50238 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| J1F34_RS24215 () | 50205..50819 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| J1F34_RS24220 () | 50819..53863 | - | 3045 | WP_001024776.1 | IncI1-type conjugal transfer protein TraU | - |
| J1F34_RS24225 () | 53953..54753 | - | 801 | WP_001164792.1 | IncI1-type conjugal transfer protein TraT | - |
| J1F34_RS24230 () | 54737..54925 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| J1F34_RS24235 () | 54989..55393 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| J1F34_RS24240 () | 55444..55971 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| J1F34_RS24245 () | 55971..56675 | - | 705 | WP_023155244.1 | IncI1-type conjugal transfer protein TraP | - |
| J1F34_RS24250 () | 56675..57964 | - | 1290 | WP_001271994.1 | conjugal transfer protein TraO | - |
| J1F34_RS24255 () | 57967..58950 | - | 984 | WP_021513963.1 | hypothetical protein | VF |
| J1F34_RS24260 () | 58961..59653 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| J1F34_RS24265 () | 59650..59997 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| J1F34_RS24270 () | 60015..63782 | - | 3768 | WP_006855639.1 | DNA primase SogL | - |
| J1F34_RS24275 () | 63872..64423 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| J1F34_RS24280 () | 64438..64728 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| J1F34_RS24285 () | 64725..65873 | - | 1149 | WP_001024976.1 | putative protein YggR | VF |
| J1F34_RS24290 () | 65870..66688 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| J1F34_RS24295 () | 66685..67143 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| J1F34_RS24300 () | 67538..68122 | - | 585 | WP_061671621.1 | histidine phosphatase family protein | - |
| J1F34_RS24305 () | 68182..69384 | - | 1203 | WP_000976357.1 | conjugal transfer protein TraF | - |
| J1F34_RS24310 () | 69470..70294 | - | 825 | WP_015058912.1 | conjugal transfer protein TraE | - |
| J1F34_RS24315 () | 70445..71599 | - | 1155 | WP_001139955.1 | integrase | - |
| J1F34_RS24320 () | 73119..73367 | + | 249 | WP_095110402.1 | hypothetical protein | - |
| J1F34_RS24325 () | 73364..74656 | - | 1293 | WP_077900551.1 | hypothetical protein | VF |
| J1F34_RS24330 () | 74656..75312 | - | 657 | WP_001193551.1 | hypothetical protein | VF |
| J1F34_RS24335 () | 75297..75857 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| J1F34_RS24340 () | 75867..76481 | - | 615 | WP_000908228.1 | hypothetical protein | VF |
| J1F34_RS24345 () | 76498..77583 | - | 1086 | WP_001208803.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| J1F34_RS24350 () | 77596..79149 | - | 1554 | WP_000362204.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| J1F34_RS24355 () | 79160..79612 | - | 453 | WP_001247333.1 | hypothetical protein | VF |
| J1F34_RS24360 () | 79599..80894 | - | 1296 | WP_000752776.1 | type 4b pilus protein PilO2 | - |
| J1F34_RS24365 () | 80887..82569 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| J1F34_RS24370 () | 82583..83020 | - | 438 | WP_000539811.1 | hypothetical protein | VF |
| J1F34_RS24375 () | 83020..84087 | - | 1068 | WP_021513968.1 | hypothetical protein | VF |
| J1F34_RS24380 () | 84839..85093 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| J1F34_RS24385 () | 85265..85948 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| J1F34_RS24390 () | 86202..86735 | - | 534 | WP_001372168.1 | transcription termination factor NusG | - |
| J1F34_RS24395 () | 87177..87464 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| J1F34_RS24400 () | 87382..87645 | - | 264 | WP_001324596.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|