MGE detailed information
MGE type: Prophage MGE length: 45800 bp
Accession: NZ_CP070962 Location: 3271256..3317055 Organism: Escherichia coli strain K-12 J53 Replicon: chromosome
Accession: NZ_CP070962 Location: 3271256..3317055 Organism: Escherichia coli strain K-12 J53 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JTR57_RS16025 (3266450) | 3266450..3267832 | - | 1383 | WP_000192863.1 | MFS transporter | - |
| JTR57_RS16030 (3268059) | 3268059..3270026 | - | 1968 | WP_000151261.1 | xylonate dehydratase YagF | - |
| JTR57_RS16035 (3270041) | 3270041..3270949 | - | 909 | WP_001136613.1 | 2-keto-3-deoxygluconate aldolase | - |
| JTR57_RS16040 (3271244) | 3271244..3272398 | + | 1155 | WP_010723086.1 | IS481 family transposase ISEc19 | Transposase |
| JTR57_RS23375 (3272413) | 3272413..3272478 | + | 66 | Protein_3154 | hypothetical protein | - |
| JTR57_RS16045 (3272492) | 3272492..3272842 | + | 351 | WP_001030800.1 | type IV toxin-antitoxin system antitoxin YagB | - |
| JTR57_RS16050 (3272865) | 3272865..3273113 | + | 249 | Protein_3156 | IS3 family transposase ISEhe3 | Transposase |
| JTR57_RS16055 (3273123) | 3273123..3273296 | - | 174 | Protein_3157 | IS30 family transposase | - |
| JTR57_RS16060 (3273352) | 3273352..3274049 | + | 698 | WP_223293341.1 | IS1 family transposase IS1R | Transposase |
| JTR57_RS16065 (3274066) | 3274066..3274413 | + | 348 | Protein_3159 | ABC transporter permease subunit | - |
| JTR57_RS16070 (3274425) | 3274425..3275471 | + | 1047 | WP_000192349.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| JTR57_RS16075 (3275580) | 3275580..3276512 | - | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| JTR57_RS16080 (3276499) | 3276499..3277902 | - | 1404 | WP_001393629.1 | S-methylmethionine permease | - |
| JTR57_RS16085 (3278146) | 3278146..3279126 | + | 981 | WP_000019403.1 | IS5 family transposase IS5D | Transposase |
| JTR57_RS16090 (3279345) | 3279345..3280400 | + | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| JTR57_RS16095 (3280439) | 3280439..3280840 | - | 402 | WP_000174689.1 | sigma factor-binding protein Crl | - |
| - (3281558) | 3281558..3281638 | - | 81 | NuclAT_12 | - | - |
| - (3281558) | 3281558..3281638 | - | 81 | NuclAT_12 | - | - |
| - (3281558) | 3281558..3281638 | - | 81 | NuclAT_12 | - | - |
| - (3281558) | 3281558..3281638 | - | 81 | NuclAT_12 | - | - |
| JTR57_RS16100 (3280898) | 3280898..3282142 | - | 1245 | WP_000189532.1 | esterase FrsA | - |
| JTR57_RS16105 (3282234) | 3282234..3282692 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| JTR57_RS16110 (3282953) | 3282953..3284410 | + | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| JTR57_RS16115 (3284467) | 3284467..3284988 | - | 522 | Protein_3169 | peptide chain release factor H | - |
| JTR57_RS16120 (3284984) | 3284984..3285190 | - | 207 | Protein_3170 | RtcB family protein | - |
| JTR57_RS16125 (3285508) | 3285508..3285960 | - | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| JTR57_RS16130 (3285970) | 3285970..3286368 | - | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| JTR57_RS16135 (3286371) | 3286371..3286664 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| JTR57_RS16140 (3286716) | 3286716..3287771 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| JTR57_RS16145 (3287842) | 3287842..3288627 | - | 786 | WP_000207552.1 | hypothetical protein | VF |
| JTR57_RS16150 (3288599) | 3288599..3290311 | + | 1713 | Protein_3176 | hypothetical protein | VF |
| JTR57_RS16155 (3290535) | 3290535..3291032 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| JTR57_RS16160 (3291208) | 3291208..3291957 | - | 750 | WP_000056849.1 | hypothetical protein | VF |
| JTR57_RS16165 (3292167) | 3292167..3292427 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| JTR57_RS16170 (3292430) | 3292430..3292708 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| JTR57_RS16175 (3292864) | 3292864..3293604 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| JTR57_RS16180 (3293575) | 3293575..3294342 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| JTR57_RS16185 (3294548) | 3294548..3295126 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| JTR57_RS16190 (3295366) | 3295366..3297810 | + | 2445 | WP_000973083.1 | Crotonobetainyl-CoA dehydrogenase | VF |
| JTR57_RS16195 (3297853) | 3297853..3298299 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| JTR57_RS16200 (3298480) | 3298480..3299250 | + | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| JTR57_RS16205 (3299291) | 3299291..3299569 | - | 279 | Protein_3187 | ISAs1 family transposase | - |
| JTR57_RS16210 (3299567) | 3299567..3299923 | + | 357 | Protein_3188 | hypothetical protein | - |
| JTR57_RS16215 (3299933) | 3299933..3300412 | + | 480 | WP_001236645.1 | protein YkfM | - |
| JTR57_RS16220 (3300549) | 3300549..3301334 | - | 786 | WP_001086141.1 | lipoprotein | - |
| JTR57_RS16230 (3301871) | 3301871..3302602 | - | 732 | WP_001340895.1 | DNA polymerase III subunit epsilon | - |
| JTR57_RS16235 (3302667) | 3302667..3303134 | + | 468 | WP_000917883.1 | ribonuclease HI | - |
| JTR57_RS16240 (3303131) | 3303131..3303853 | - | 723 | WP_001326702.1 | class I SAM-dependent methyltransferase | - |
| JTR57_RS16245 (3303887) | 3303887..3304642 | + | 756 | WP_001052715.1 | hydroxyacylglutathione hydrolase | - |
| JTR57_RS16250 (3304714) | 3304714..3306072 | + | 1359 | WP_000644685.1 | hypothetical protein | VF |
| JTR57_RS16255 (3306120) | 3306120..3306716 | - | 597 | Protein_3196 | methyltransferase domain-containing protein | - |
| JTR57_RS16260 (3306747) | 3306747..3307547 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| JTR57_RS16265 (3307788) | 3307788..3308702 | + | 915 | WP_000648572.1 | HTH-type transcriptional regulator ArgP | VF |
| JTR57_RS16270 (3308699) | 3308699..3309502 | - | 804 | WP_000997010.1 | 2,5-didehydrogluconate reductase DkgB | - |
| JTR57_RS16305 (3315261) | 3315261..3315836 | - | 576 | WP_001140187.1 | Histidine biosynthesis bifunctional protein HisB | VF |
| JTR57_RS16310 (3316024) | 3316024..3317055 | + | 1032 | WP_000594006.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| JTR57_RS16315 (3317048) | 3317048..3317701 | + | 654 | WP_001294600.1 | methionine ABC transporter permease MetI | - |
| JTR57_RS16320 (3317741) | 3317741..3318556 | + | 816 | WP_000874226.1 | methionine ABC transporter substrate-binding lipoprotein MetQ | - |
| JTR57_RS16325 (3318674) | 3318674..3319078 | + | 405 | WP_001202329.1 | Rcs stress response system protein RcsF | - |
| JTR57_RS16330 (3319075) | 3319075..3319782 | + | 708 | WP_000094011.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| JTR57_RS16335 (3319894) | 3319894..3321612 | + | 1719 | WP_001260717.1 | proline--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|