MGE detailed information
MGE type: Prophage MGE length: 23043 bp
Accession: NZ_CP070482 Location: 1077771..1100813 Organism: Escherichia coli strain BTH101 Replicon: chromosome
Accession: NZ_CP070482 Location: 1077771..1100813 Organism: Escherichia coli strain BTH101 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JWV29_RS05155 (1073022) | 1073022..1073732 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| JWV29_RS05160 (1073735) | 1073735..1074295 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| JWV29_RS05165 (1074330) | 1074330..1074671 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| JWV29_RS05170 (1074806) | 1074806..1075132 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| JWV29_RS05175 (1075338) | 1075338..1076552 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| JWV29_RS05180 (1076564) | 1076564..1077583 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| JWV29_RS05185 (1077771) | 1077771..1078628 | - | 858 | Protein_1016 | Putative defective protein IntQ ; Integrase | Integrase |
| JWV29_RS05190 (1078720) | 1078720..1079948 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| JWV29_RS05195 (1079959) | 1079959..1080264 | - | 306 | Protein_1018 | DUF3596 domain-containing protein | - |
| JWV29_RS05200 (1080278) | 1080278..1080973 | - | 696 | Protein_1019 | IS3 family transposase IS2 | Transposase |
| JWV29_RS05205 (1080970) | 1080970..1081737 | - | 768 | Protein_1020 | exonuclease | - |
| JWV29_RS05210 (1081830) | 1081830..1082021 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| JWV29_RS05215 (1082018) | 1082018..1082206 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| JWV29_RS05220 (1082774) | 1082774..1082992 | - | 219 | WP_001171942.1 | protein YdfC | - |
| JWV29_RS22460 (1083022) | 1083022..1083150 | - | 129 | WP_000344964.1 | protein YdfB | - |
| JWV29_RS05225 (1083152) | 1083152..1083307 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| JWV29_RS05230 (1083474) | 1083474..1083881 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| JWV29_RS05235 (1083965) | 1083965..1084195 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| JWV29_RS05240 (1084179) | 1084179..1084457 | + | 279 | Protein_1028 | protein YdfX | - |
| JWV29_RS05245 (1084492) | 1084492..1084641 | + | 150 | WP_011443592.1 | protein YdfW | - |
| JWV29_RS05250 (1085078) | 1085078..1085410 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| JWV29_RS05255 (1085613) | 1085613..1085918 | - | 306 | WP_001326990.1 | protein YdfV | - |
| JWV29_RS05260 (1085943) | 1085943..1086182 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| JWV29_RS05265 (1086182) | 1086182..1086469 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| JWV29_RS05270 (1086541) | 1086541..1086696 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| JWV29_RS05275 (1086913) | 1086913..1087164 | + | 252 | WP_000980994.1 | protein Rem | - |
| JWV29_RS05280 (1087231) | 1087231..1087509 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| JWV29_RS05285 (1087511) | 1087511..1088560 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| JWV29_RS05290 (1088574) | 1088574..1089326 | + | 753 | WP_001047135.1 | antitermination protein | - |
| JWV29_RS05295 (1089604) | 1089604..1089693 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| JWV29_RS05300 (1089748) | 1089748..1089960 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| JWV29_RS05305 (1090261) | 1090261..1090476 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| JWV29_RS05310 (1090840) | 1090840..1091010 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| JWV29_RS05315 (1091230) | 1091230..1091445 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| JWV29_RS05320 (1091450) | 1091450..1091761 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| JWV29_RS05325 (1091758) | 1091758..1092291 | + | 534 | WP_001092971.1 | lysozyme | - |
| JWV29_RS05330 (1092288) | 1092288..1092785 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| JWV29_RS05335 (1093148) | 1093148..1093360 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| JWV29_RS05340 (1093371) | 1093371..1093559 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| JWV29_RS05345 (1093562) | 1093562..1093627 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| JWV29_RS05355 (1094033) | 1094033..1094206 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| JWV29_RS05360 (1094358) | 1094358..1094768 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| JWV29_RS05365 (1094826) | 1094826..1095059 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| JWV29_RS05370 (1095448) | 1095448..1096017 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| JWV29_RS05375 (1095968) | 1095968..1096930 | + | 963 | WP_001027733.1 | phage tail protein | - |
| JWV29_RS05380 (1096930) | 1096930..1097505 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| JWV29_RS05385 (1097603) | 1097603..1098193 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| JWV29_RS05390 (1098510) | 1098510..1098743 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| JWV29_RS05395 (1098812) | 1098812..1098925 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| JWV29_RS05400 (1099446) | 1099446..1100813 | + | 1368 | Protein_1059 | MHS family MFS transporter | - |
| JWV29_RS05405 (1100902) | 1100902..1102362 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| JWV29_RS05410 (1102397) | 1102397..1102600 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| JWV29_RS05415 (1102777) | 1102777..1103463 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| JWV29_RS05420 (1103552) | 1103552..1104298 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |