MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 172328 bp
Accession: NZ_CP068796 Location: 725589..897916 Organism: Escherichia coli strain RIVM_C012087 Replicon: chromosome
Accession: NZ_CP068796 Location: 725589..897916 Organism: Escherichia coli strain RIVM_C012087 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN38_RS03405 () | 720891..721181 | - | 291 | WP_001295626.1 | ubiquinone biosynthesis accessory factor UbiK | - |
| JNN38_RS03410 () | 721555..722208 | + | 654 | WP_001076997.1 | 3,4-dihydroxy-2-butanone-4-phosphate synthase | - |
| JNN38_RS03415 () | 722470..722640 | + | 171 | WP_000469266.1 | hypothetical protein | - |
| JNN38_RS03420 () | 722698..723471 | - | 774 | WP_001295627.1 | zinc transporter ZupT | - |
| JNN38_RS03425 () | 723614..724402 | + | 789 | WP_001320780.1 | 4,5-DOPA dioxygenase extradiol | - |
| JNN38_RS03430 () | 724440..725600 | - | 1161 | WP_000442860.1 | glutathionylspermidine synthase family protein | - |
| JNN38_RS03435 () | 725606..726277 | - | 672 | WP_000831543.1 | DUF1190 family protein | - |
| JNN38_RS03440 () | 726425..727906 | - | 1482 | WP_000735278.1 | outer membrane channel protein TolC | - |
| JNN38_RS03445 () | 728111..728740 | + | 630 | WP_000917117.1 | ADP-ribose diphosphatase | - |
| JNN38_RS03450 () | 728741..729163 | + | 423 | WP_106106581.1 | DUF1249 family protein | - |
| JNN38_RS03455 () | 729188..730015 | + | 828 | WP_000444752.1 | 3',5'-cyclic-AMP phosphodiesterase | - |
| JNN38_RS03460 () | 730015..730596 | + | 582 | WP_106106580.1 | esterase YqiA | - |
| JNN38_RS03465 () | 730625..732517 | + | 1893 | WP_000195296.1 | DNA topoisomerase IV subunit B | - |
| JNN38_RS03470 () | 732565..732879 | - | 315 | WP_000958598.1 | antibiotic biosynthesis monooxygenase | - |
| JNN38_RS03475 () | 732910..733491 | - | 582 | WP_000065430.1 | NADPH:quinone oxidoreductase MdaB | - |
| JNN38_RS03480 () | 733810..734142 | + | 333 | WP_000917684.1 | DUF2645 family protein | - |
| JNN38_RS03485 () | 734188..735537 | - | 1350 | WP_000673402.1 | two-component system sensor histidine kinase QseC | - |
| JNN38_RS03490 () | 735534..736193 | - | 660 | WP_106106579.1 | Transcriptional regulatory protein QseB | VF |
| JNN38_RS03495 () | 736345..736737 | + | 393 | WP_000712658.1 | OB fold stress tolerance protein YgiW | - |
| JNN38_RS03500 () | 736790..737272 | + | 483 | WP_106106578.1 | GyrI-like domain-containing protein | - |
| JNN38_RS03505 () | 737477..737773 | + | 297 | WP_000415583.1 | type II toxin-antitoxin system toxin MqsR | Toxin Detail |
| JNN38_RS03510 () | 737775..738170 | + | 396 | WP_000650107.1 | type II toxin-antitoxin system antitoxin MqsA | Antitoxin Detail |
| JNN38_RS03515 () | 738303..739910 | + | 1608 | WP_106106577.1 | ABC transporter substrate-binding protein | - |
| JNN38_RS03520 () | 740048..742306 | + | 2259 | WP_001281881.1 | DNA topoisomerase IV subunit A | - |
| JNN38_RS03525 () | 742540..743277 | + | 738 | WP_000965712.1 | 1-acylglycerol-3-phosphate O-acyltransferase | - |
| JNN38_RS03530 () | 743352..744764 | + | 1413 | WP_106106576.1 | cell division protein FtsP | - |
| JNN38_RS03535 () | 744875..747094 | + | 2220 | WP_000095154.1 | YgiQ family radical SAM protein | - |
| JNN38_RS03540 () | 747137..747394 | - | 258 | WP_000848528.1 | lipoprotein YqhH | - |
| JNN38_RS03545 () | 747445..748371 | - | 927 | WP_000691619.1 | YbjP/YqhG family protein | - |
| JNN38_RS03550 () | 748571..749398 | - | 828 | WP_000013149.1 | 2,5-didehydrogluconate reductase DkgA | - |
| JNN38_RS03555 () | 749503..750666 | - | 1164 | WP_001058802.1 | alcohol dehydrogenase | - |
| JNN38_RS03560 () | 750860..751759 | + | 900 | WP_001298382.1 | DNA-binding transcriptional regulator YqhC | - |
| JNN38_RS03565 () | 751799..752458 | - | 660 | WP_000268419.1 | DedA family protein | - |
| JNN38_RS03570 () | 752598..753785 | - | 1188 | WP_001320425.1 | cystathionine beta-lyase | - |
| JNN38_RS03575 () | 754037..754771 | + | 735 | WP_000527844.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| JNN38_RS03580 () | 754778..755203 | + | 426 | WP_001240712.1 | TonB system transport protein ExbD | - |
| JNN38_RS03585 () | 755475..756359 | - | 885 | WP_000018760.1 | putative oxidoreductase YghA | VF |
| JNN38_RS03590 () | 756550..757044 | + | 495 | WP_000439331.1 | TIGR00645 family protein | - |
| JNN38_RS03595 () | 757084..758124 | - | 1041 | WP_000262172.1 | L-glyceraldehyde 3-phosphate reductase | - |
| JNN38_RS03600 () | 758281..759168 | + | 888 | WP_001424373.1 | dienelactone hydrolase family protein | - |
| JNN38_RS03605 () | 759287..759574 | + | 288 | WP_001059139.1 | DUF2623 domain-containing protein | - |
| JNN38_RS03610 () | 759763..760881 | + | 1119 | WP_000145410.1 | hydrogenase 2 small subunit | - |
| JNN38_RS03615 () | 760884..761870 | + | 987 | WP_001081873.1 | hydrogenase 2 operon protein HybA | - |
| JNN38_RS03620 () | 761860..763038 | + | 1179 | WP_000017703.1 | Ni/Fe-hydrogenase cytochrome b subunit | - |
| JNN38_RS03625 () | 763035..764738 | + | 1704 | WP_000083057.1 | hydrogenase 2 large subunit | - |
| JNN38_RS03630 () | 764738..765232 | + | 495 | WP_001221939.1 | HyaD/HybD family hydrogenase maturation endopeptidase | - |
| JNN38_RS03635 () | 765225..765713 | + | 489 | WP_000134014.1 | hydrogenase-2 assembly chaperone | - |
| JNN38_RS03640 () | 765706..766047 | + | 342 | WP_000544953.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| JNN38_RS03645 () | 766060..766308 | + | 249 | WP_000334896.1 | hydrogenase maturation factor HybG | - |
| JNN38_RS03650 () | 766431..767297 | - | 867 | WP_001295515.1 | glutathione-dependent disulfide-bond oxidoreductase | - |
| JNN38_RS03655 () | 767502..769361 | + | 1860 | WP_001300624.1 | bifunctional glutathionylspermidine amidase/synthase | - |
| JNN38_RS03660 () | 769653..771152 | + | 1500 | WP_000933299.1 | inorganic phosphate transporter PitB | - |
| JNN38_RS03665 () | 771201..771893 | - | 693 | WP_001190782.1 | thymidylate kinase | - |
| JNN38_RS03670 () | 772067..772780 | + | 714 | WP_001076218.1 | thymidylate kinase | - |
| JNN38_RS03675 () | 772812..773570 | + | 759 | WP_060579071.1 | hypothetical protein | - |
| JNN38_RS03680 () | 773616..774965 | + | 1350 | WP_000896885.1 | lipopolysaccharide biosynthesis protein | - |
| JNN38_RS03685 () | 774965..775789 | + | 825 | WP_000984978.1 | hypothetical protein | - |
| JNN38_RS03690 () | 775801..776361 | + | 561 | WP_060579070.1 | YtfJ family protein | - |
| JNN38_RS03695 () | 776392..777462 | + | 1071 | WP_000779636.1 | LPS export ABC transporter permease LptF | - |
| JNN38_RS03700 () | 777459..778538 | + | 1080 | WP_001318997.1 | LPS export ABC transporter permease LptG | - |
| JNN38_RS03705 () | 778573..779745 | - | 1173 | WP_000524970.1 | 8-amino-7-oxononanoate synthase | VF |
| JNN38_RS03710 () | 779745..779993 | - | 249 | WP_000248097.1 | acyl carrier protein | - |
| JNN38_RS03715 () | 780025..780939 | - | 915 | WP_001077166.1 | NAD-dependent epimerase/dehydratase family protein | - |
| JNN38_RS03720 () | 780936..782657 | - | 1722 | WP_154311742.1 | Long-chain-fatty-acid--AMP ligase FadD26 | VF |
| JNN38_RS03725 () | 783035..784177 | + | 1143 | WP_001300526.1 | DNA-binding protein | - |
| JNN38_RS03730 () | 784184..784948 | - | 765 | WP_001297764.1 | transcriptional regulator GlcC | - |
| JNN38_RS03735 () | 785199..786698 | + | 1500 | WP_000026121.1 | glycolate oxidase subunit GlcD | - |
| JNN38_RS03740 () | 786698..787750 | + | 1053 | WP_060579069.1 | glycolate oxidase subunit GlcE | - |
| JNN38_RS03745 () | 787761..788984 | + | 1224 | WP_060579068.1 | glycolate oxidase subunit GlcF | - |
| JNN38_RS03750 () | 788989..789393 | + | 405 | WP_001296404.1 | heme-binding protein | - |
| JNN38_RS03755 () | 789415..791586 | + | 2172 | WP_060579067.1 | malate synthase G | - |
| JNN38_RS03760 () | 791941..793623 | + | 1683 | WP_000259302.1 | glycolate permease GlcA | - |
| JNN38_RS03765 () | 794109..798668 | + | 4560 | WP_029701459.1 | hypothetical protein | VF |
| JNN38_RS03770 () | 798832..799641 | + | 810 | WP_000895873.1 | Leader peptidase PppA | VF |
| JNN38_RS03775 () | 799707..800117 | + | 411 | WP_001305972.1 | type II secretion system pilot lipoprotein GspS-beta | - |
| JNN38_RS03780 () | 800135..801094 | + | 960 | WP_014639304.1 | Type II secretion system protein C | VF |
| JNN38_RS03785 () | 801124..803184 | + | 2061 | WP_029701460.1 | Type II secretion system protein D | VF |
| JNN38_RS03790 () | 803184..804677 | + | 1494 | WP_000249329.1 | Type II secretion system protein E | VF |
| JNN38_RS03795 () | 804677..805900 | + | 1224 | WP_001173416.1 | Type II secretion system protein F | VF |
| JNN38_RS03800 () | 805917..806372 | + | 456 | WP_001087296.1 | Type II secretion system protein G | VF |
| JNN38_RS03805 () | 806376..806939 | + | 564 | WP_001115147.1 | Type II secretion system protein H | VF |
| JNN38_RS03810 () | 806936..807307 | + | 372 | WP_000820109.1 | Type II secretion system protein I | VF |
| JNN38_RS03815 () | 807304..807909 | + | 606 | WP_023147221.1 | Type II secretion system protein J | VF |
| JNN38_RS03820 () | 807906..808883 | + | 978 | WP_000633200.1 | Putative type II secretion system protein K | VF |
| JNN38_RS03825 () | 808880..810058 | + | 1179 | WP_000094981.1 | Type II secretion system protein L | VF |
| JNN38_RS03830 () | 810060..810596 | + | 537 | WP_000942810.1 | Type II secretion system protein M | VF |
| JNN38_RS03835 () | 811657..812433 | + | 777 | WP_000124290.1 | Polysialic acid transport protein KpsM | VF |
| JNN38_RS03840 () | 812430..813104 | + | 675 | WP_029701466.1 | Polysialic acid transport ATP-binding protein KpsT | VF |
| JNN38_RS03845 () | 813274..813688 | + | 415 | Protein_754 | Glycerol-3-phosphate cytidylyltransferase | VF |
| JNN38_RS03850 () | 814252..814557 | + | 306 | WP_203003931.1 | hypothetical protein | - |
| JNN38_RS03855 () | 815050..815743 | - | 694 | Protein_756 | IS1 family transposase | - |
| JNN38_RS03860 () | 815792..816979 | + | 1188 | WP_203003944.1 | CDP-glycerol glycerophosphotransferase family protein | - |
| JNN38_RS03865 () | 817017..818174 | + | 1158 | WP_166742448.1 | hypothetical protein | - |
| JNN38_RS03870 () | 818587..819555 | + | 969 | WP_029701470.1 | hypothetical protein | - |
| JNN38_RS03875 () | 819817..821049 | - | 1233 | WP_029701471.1 | hypothetical protein | VF |
| JNN38_RS03880 () | 821084..823111 | - | 2028 | WP_029701472.1 | hypothetical protein | VF |
| JNN38_RS03885 () | 823108..823848 | - | 741 | WP_001604840.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | VF |
| JNN38_RS03890 () | 823858..825534 | - | 1677 | WP_001564067.1 | Polysialic acid transport protein KpsD | VF |
| JNN38_RS03895 () | 825558..826706 | - | 1149 | WP_000905920.1 | hypothetical protein | VF |
| JNN38_RS03900 () | 826778..827761 | - | 984 | WP_001296394.1 | Arabinose 5-phosphate isomerase KpsF | VF |
| JNN38_RS03905 () | 828571..828741 | - | 171 | Protein_766 | IS110 family transposase | - |
| JNN38_RS03910 () | 829084..829926 | - | 843 | Protein_767 | DUF4942 domain-containing protein | - |
| JNN38_RS03915 () | 830011..830205 | - | 195 | WP_203003946.1 | hypothetical protein | - |
| JNN38_RS03920 () | 830284..830433 | - | 150 | Protein_769 | hypothetical protein | - |
| JNN38_RS03925 () | 830430..830807 | - | 378 | WP_001564063.1 | TA system toxin CbtA family protein | Toxin Detail |
| JNN38_RS03930 () | 830897..831265 | - | 369 | WP_021553056.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| JNN38_RS03935 () | 831428..831649 | - | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| JNN38_RS03940 () | 831714..832190 | - | 477 | WP_021553055.1 | RadC family protein | - |
| JNN38_RS03945 () | 832206..832685 | - | 480 | WP_001564060.1 | antirestriction protein | - |
| JNN38_RS03950 () | 832951..833769 | - | 819 | WP_001564059.1 | DUF945 domain-containing protein | - |
| JNN38_RS03955 () | 833859..834092 | - | 234 | WP_001278293.1 | DUF905 family protein | - |
| JNN38_RS03960 () | 834098..834775 | - | 678 | WP_001564058.1 | hypothetical protein | - |
| JNN38_RS03965 () | 834926..835606 | - | 681 | WP_001278649.1 | WYL domain-containing protein | - |
| JNN38_RS03970 () | 835809..836693 | - | 885 | WP_001564055.1 | 50S ribosome-binding GTPase | - |
| JNN38_RS03975 () | 836794..838017 | + | 1224 | WP_001107219.1 | hypothetical protein | - |
| JNN38_RS03980 () | 839180..839710 | - | 531 | WP_000778605.1 | hypothetical protein | - |
| JNN38_RS03985 () | 840380..841111 | + | 732 | WP_001075495.1 | inovirus Gp2 family protein | - |
| JNN38_RS03990 () | 841632..842084 | + | 453 | WP_000558152.1 | N-acetyltransferase | - |
| JNN38_RS03995 () | 842620..843555 | + | 936 | WP_000332862.1 | pseudouridine kinase | - |
| JNN38_RS04000 () | 843548..844483 | + | 936 | WP_001290195.1 | pseudouridine-5'-phosphate glycosidase | - |
| JNN38_RS04005 () | 844567..845817 | + | 1251 | WP_001328687.1 | NupC/NupG family nucleoside CNT transporter | - |
| JNN38_RS04010 () | 845836..846930 | - | 1095 | WP_000370278.1 | sugar kinase | - |
| JNN38_RS04015 () | 848231..848797 | + | 567 | WP_001126810.1 | inovirus-type Gp2 protein | - |
| JNN38_RS04020 () | 849055..849630 | + | 576 | WP_001564054.1 | hypothetical protein | - |
| JNN38_RS04025 () | 849699..849932 | + | 234 | WP_000958492.1 | AlpA family transcriptional regulator | - |
| JNN38_RS04030 () | 849944..850169 | + | 226 | Protein_791 | hypothetical protein | - |
| JNN38_RS04035 () | 850231..850497 | - | 267 | Protein_792 | IS3 family transposase IS2 | Transposase |
| JNN38_RS04040 () | 850588..851745 | + | 1158 | Protein_793 | Multidrug resistance protein MexB | VF |
| JNN38_RS04045 () | 851866..852516 | + | 651 | WP_001564048.1 | TetR/AcrR family transcriptional regulator | - |
| JNN38_RS04050 () | 852539..852832 | + | 294 | Protein_795 | helix-turn-helix domain-containing protein | - |
| JNN38_RS04055 () | 853189..853734 | - | 546 | WP_001564047.1 | propanediol utilization system shell hexameric protein GrpS | - |
| JNN38_RS04060 () | 853779..854930 | - | 1152 | WP_001001003.1 | propanediol utilization system methionine adenosyltransferase GrpR | - |
| JNN38_RS04065 () | 855059..856114 | - | 1056 | WP_001564046.1 | HTH-type transcriptional activator Btr | VF |
| JNN38_RS04070 () | 856131..857360 | - | 1230 | WP_000792585.1 | propanediol utilization sensor histidine kinase GrpP | - |
| JNN38_RS04075 () | 857976..858569 | - | 594 | Protein_800 | maturase | - |
| JNN38_RS04080 () | 858569..858938 | - | 370 | Protein_801 | reverse transcriptase/maturase | - |
| JNN38_RS04085 () | 859550..860455 | - | 906 | WP_001564044.1 | propanediol utilization system permease GrpO | - |
| JNN38_RS04090 () | 860592..861509 | - | 918 | WP_001564043.1 | glycyl radical diol dehydratase-activating enzyme GrpN | - |
| JNN38_RS04095 () | 861618..864170 | - | 2553 | WP_000890295.1 | glycyl radical diol dehydratase GrpM | - |
| JNN38_RS04100 () | 864219..864794 | - | 576 | WP_000722279.1 | propanediol utilization system protease GrpL | - |
| JNN38_RS04105 () | 864805..865104 | - | 300 | WP_000746009.1 | propanediol utilization system shell hexameric protein GrpK | - |
| JNN38_RS04110 () | 865128..866645 | - | 1518 | WP_000997839.1 | Aldehyde-alcohol dehydrogenase | VF |
| JNN38_RS04115 () | 866706..867491 | - | 786 | WP_001205499.1 | propanediol utilization microcompartment protein GrpI | - |
| JNN38_RS04120 () | 867513..867794 | - | 282 | WP_001301171.1 | propanediol utilization system shell hexameric protein GrpH | - |
| JNN38_RS04125 () | 868079..869275 | - | 1197 | WP_001362987.1 | propanediol utilization system propionate kinase GrpG | - |
| JNN38_RS04130 () | 869304..869801 | - | 498 | WP_001564042.1 | propanediol utilization system heme-binding protein GrpF | - |
| JNN38_RS04135 () | 869829..870098 | - | 270 | WP_001564041.1 | propanediol utilization microcompartment vertex protein GrpE | - |
| JNN38_RS04140 () | 870110..870814 | - | 705 | WP_000370214.1 | propanediol utilization system flavoprotein GrpD | - |
| JNN38_RS04145 () | 870819..871577 | - | 759 | WP_001332070.1 | propanediol utilization system chaperone GrpC | - |
| JNN38_RS04150 () | 871632..872318 | - | 687 | WP_001109982.1 | propanediol utilization system phosphotransacylase GrpB | - |
| JNN38_RS04155 () | 872458..873576 | - | 1119 | WP_000135343.1 | NAD-dependent methanol dehydrogenase | VF |
| JNN38_RS04160 () | 873933..874433 | + | 501 | Protein_817 | DNA-binding protein | - |
| JNN38_RS04165 () | 874529..874762 | + | 234 | WP_000124185.1 | hypothetical protein | - |
| JNN38_RS04170 () | 874815..875006 | - | 192 | WP_001287883.1 | DUF4222 domain-containing protein | - |
| JNN38_RS04175 () | 875727..875987 | + | 261 | Protein_820 | IS3 family transposase ISLad1 | Transposase |
| JNN38_RS04180 () | 876130..877875 | + | 1746 | WP_001564039.1 | AAA family ATPase | - |
| JNN38_RS04185 () | 878269..878709 | + | 441 | WP_001403216.1 | hypothetical protein | VF |
| JNN38_RS04190 () | 878750..879616 | + | 867 | Protein_823 | ImpA domain protein | - |
| JNN38_RS04195 () | 879733..880377 | + | 645 | WP_024196335.1 | hypothetical protein | - |
| JNN38_RS04200 () | 880518..881750 | + | 1233 | WP_001564037.1 | phosphoadenosine phosphosulfate reductase | - |
| JNN38_RS04205 () | 881735..882373 | + | 639 | WP_001564035.1 | ParB N-terminal domain-containing protein | - |
| JNN38_RS04210 () | 882452..882721 | + | 270 | WP_000226517.1 | PerC family transcriptional regulator | - |
| JNN38_RS04215 () | 882742..883386 | + | 645 | WP_106106617.1 | hypothetical protein | - |
| JNN38_RS04220 () | 883451..883774 | + | 324 | WP_001564033.1 | hypothetical protein | - |
| JNN38_RS04225 () | 883822..884613 | - | 792 | Protein_830 | ATP-dependent helicase | - |
| JNN38_RS04230 () | 884608..884997 | + | 390 | Protein_831 | IS3 family transposase | - |
| JNN38_RS04235 () | 885669..887177 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| JNN38_RS04240 () | 887267..887740 | + | 474 | Protein_833 | IS3 family transposase IS629 | Transposase |
| JNN38_RS04245 () | 887938..888195 | - | 258 | Protein_834 | IS3 family transposase IS911 | Transposase |
| JNN38_RS04250 () | 888265..888612 | - | 348 | WP_001564031.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| JNN38_RS04255 () | 889231..889924 | - | 694 | Protein_836 | IS1 family transposase IS1N | Transposase |
| JNN38_RS04260 () | 890177..891646 | + | 1470 | WP_001331566.1 | basic amino acid/polyamine antiporter | - |
| JNN38_RS04265 () | 891751..894120 | + | 2370 | WP_000671170.1 | arginine decarboxylase | - |
| JNN38_RS04270 () | 894195..895694 | + | 1500 | WP_001331567.1 | basic amino acid/polyamine antiporter | - |
| JNN38_RS04275 () | 895837..896534 | + | 698 | Protein_840 | IS1 family transposase IS1R | Transposase |
| JNN38_RS04280 () | 897001..897552 | - | 552 | WP_001447126.1 | Transcriptional repressor MprA | VF |
| JNN38_RS04285 () | 897719..898510 | - | 792 | Protein_842 | IS3 family transposase | - |
| JNN38_RS04290 () | 898527..899224 | - | 698 | Protein_843 | IS1 family transposase | - |
| JNN38_RS04295 () | 899754..900797 | - | 1044 | WP_000147018.1 | hypothetical protein | - |
| JNN38_RS04300 () | 901053..902318 | - | 1266 | WP_001218869.1 | integrase arm-type DNA-binding domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|