MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 60457 bp
Accession: NZ_CP068633 Location: 1966183..2026639 Organism: Vibrio parahaemolyticus strain VP17 Replicon: chromosome
Accession: NZ_CP068633 Location: 1966183..2026639 Organism: Vibrio parahaemolyticus strain VP17 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JHT19_RS09040 (JHT19_09030) | 1961577..1961969 | - | 393 | WP_025796295.1 | hypothetical protein | - |
| JHT19_RS09045 (JHT19_09035) | 1961966..1962388 | - | 423 | WP_114867613.1 | ATP-binding protein | - |
| JHT19_RS09050 (JHT19_09040) | 1963140..1963619 | + | 480 | WP_015728478.1 | DUF1456 family protein | - |
| JHT19_RS09055 (JHT19_09045) | 1964224..1965135 | + | 912 | WP_114867614.1 | hypothetical protein | - |
| JHT19_RS09060 (JHT19_09050) | 1965125..1965595 | + | 471 | WP_086047304.1 | hypothetical protein | - |
| JHT19_RS09065 (JHT19_09055) | 1966237..1967157 | - | 921 | WP_010446562.1 | IS5-like element ISVa2 family transposase | - |
| JHT19_RS09070 (JHT19_09060) | 1967208..1968308 | - | 1101 | WP_237320883.1 | relaxase/mobilization nuclease domain-containing protein | - |
| JHT19_RS09075 | 1968317..1968538 | - | 222 | WP_237320884.1 | hypothetical protein | - |
| JHT19_RS09080 (JHT19_09065) | 1968528..1969070 | - | 543 | WP_114867615.1 | chromosome partitioning protein ParA | - |
| JHT19_RS09085 | 1969641..1970305 | + | 665 | Protein_1761 | transposase | - |
| JHT19_RS09090 (JHT19_09070) | 1970380..1972284 | - | 1905 | WP_230238089.1 | recombinase family protein | - |
| JHT19_RS09095 (JHT19_09075) | 1972383..1972640 | + | 258 | Protein_1763 | carboxypeptidase M32 | - |
| JHT19_RS09100 (JHT19_09080) | 1972727..1973686 | - | 960 | WP_114867616.1 | LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase | - |
| JHT19_RS09105 (JHT19_09085) | 1974373..1975800 | + | 1428 | WP_025550845.1 | APC family permease | - |
| JHT19_RS09110 (JHT19_09090) | 1975913..1976272 | - | 360 | WP_025499161.1 | hypothetical protein | - |
| JHT19_RS09115 (JHT19_09095) | 1976650..1977591 | + | 942 | WP_005464332.1 | homoserine O-succinyltransferase | - |
| JHT19_RS09120 (JHT19_09100) | 1977741..1978466 | + | 726 | WP_114867619.1 | type IV pilus biogenesis/stability protein PilW | - |
| JHT19_RS09125 (JHT19_09105) | 1978797..1979726 | + | 930 | WP_021486610.1 | phosphate/phosphite/phosphonate ABC transporter substrate-binding protein | - |
| JHT19_RS09130 (JHT19_09110) | 1979726..1981885 | + | 2160 | WP_114867620.1 | GGDEF domain-containing phosphodiesterase | - |
| JHT19_RS09135 (JHT19_09115) | 1982060..1985213 | + | 3154 | Protein_1771 | response regulator | - |
| JHT19_RS09140 (JHT19_09120) | 1985231..1985704 | + | 474 | WP_021454613.1 | hypothetical protein | - |
| JHT19_RS09145 (JHT19_09125) | 1985706..1986794 | + | 1089 | WP_162814182.1 | sulfate ABC transporter permease | - |
| JHT19_RS09150 (JHT19_09130) | 1986870..1987496 | - | 627 | WP_114867622.1 | sugar O-acetyltransferase | - |
| JHT19_RS09155 (JHT19_09135) | 1987679..1988011 | - | 333 | WP_005464576.1 | hypothetical protein | - |
| JHT19_RS09160 (JHT19_09140) | 1988195..1988740 | - | 546 | WP_017448894.1 | class IV adenylate cyclase | - |
| JHT19_RS09165 (JHT19_09145) | 1988828..1989262 | - | 435 | WP_005477866.1 | DUF962 domain-containing protein | - |
| JHT19_RS09170 (JHT19_09150) | 1989387..1989740 | - | 354 | WP_021449139.1 | MmcQ/YjbR family DNA-binding protein | - |
| JHT19_RS09175 (JHT19_09155) | 1989773..1990255 | - | 483 | WP_021486608.1 | MarR family transcriptional regulator | - |
| JHT19_RS09180 (JHT19_09160) | 1990376..1991263 | + | 888 | WP_005464322.1 | DMT family transporter | - |
| JHT19_RS09185 | 1991330..1991830 | - | 501 | WP_237320886.1 | AraC family transcriptional regulator | - |
| JHT19_RS09190 | 1991827..1992156 | - | 330 | WP_237320888.1 | hypothetical protein | - |
| JHT19_RS09195 (JHT19_09170) | 1992291..1992932 | - | 642 | WP_025554377.1 | alanyl-tRNA editing protein | - |
| JHT19_RS09200 (JHT19_09175) | 1993064..1995229 | - | 2166 | WP_236579245.1 | Ig-like domain-containing protein | - |
| JHT19_RS09205 (JHT19_09180) | 1995787..1997295 | - | 1509 | WP_114867624.1 | EAL domain-containing protein | - |
| JHT19_RS09210 (JHT19_09185) | 1997648..1998664 | - | 1017 | WP_005477846.1 | manganese-dependent inorganic pyrophosphatase | - |
| JHT19_RS09215 (JHT19_09190) | 1998928..2000199 | - | 1272 | WP_015296864.1 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
| JHT19_RS09220 (JHT19_09195) | 2000214..2001641 | - | 1428 | WP_162814183.1 | NAD-dependent succinate-semialdehyde dehydrogenase | - |
| JHT19_RS09225 (JHT19_09200) | 2001696..2002778 | - | 1083 | WP_025522934.1 | agmatine deiminase | - |
| JHT19_RS09230 (JHT19_09205) | 2002791..2003657 | - | 867 | WP_025522936.1 | N-carbamoylputrescine amidase | - |
| JHT19_RS09235 (JHT19_09210) | 2003675..2004952 | - | 1278 | WP_031852232.1 | FAD-binding oxidoreductase | - |
| JHT19_RS09240 (JHT19_09215) | 2004990..2006474 | - | 1485 | WP_025558553.1 | aldehyde dehydrogenase | - |
| JHT19_RS09245 (JHT19_09220) | 2006510..2007067 | - | 558 | WP_015296870.1 | HTH-type transcriptional regulator PuuR | - |
| JHT19_RS09250 (JHT19_09225) | 2007086..2007832 | - | 747 | WP_114867627.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
| JHT19_RS09255 (JHT19_09230) | 2008173..2009516 | + | 1344 | WP_005500353.1 | glutamine synthetase family protein | - |
| JHT19_RS09260 (JHT19_09235) | 2009535..2011010 | + | 1476 | WP_021449153.1 | Na+/H+ antiporter NhaC family protein | - |
| JHT19_RS09265 (JHT19_09240) | 2011101..2011562 | - | 462 | WP_025499321.1 | hypothetical protein | - |
| JHT19_RS09270 (JHT19_09245) | 2011904..2012350 | + | 447 | WP_021449154.1 | DUF3291 domain-containing protein | - |
| JHT19_RS09275 (JHT19_09250) | 2012466..2012738 | + | 273 | WP_025518832.1 | lactoylglutathione lyase | - |
| JHT19_RS09280 (JHT19_09255) | 2012880..2013893 | - | 1014 | Protein_1800 | IS481 family transposase | - |
| JHT19_RS09285 (JHT19_09260) | 2014207..2014653 | - | 447 | Protein_1801 | GNAT family N-acetyltransferase | - |
| JHT19_RS09290 (JHT19_09265) | 2014832..2015242 | - | 411 | WP_024701711.1 | hypothetical protein | - |
| JHT19_RS09295 (JHT19_09270) | 2015323..2016213 | - | 891 | WP_005485669.1 | hypothetical protein | - |
| JHT19_RS09300 (JHT19_09280) | 2016723..2017523 | - | 801 | WP_159408403.1 | IS3 family transposase | - |
| JHT19_RS09305 (JHT19_09285) | 2017520..2017828 | - | 309 | WP_005464425.1 | transposase | - |
| JHT19_RS09310 (JHT19_09290) | 2018045..2018314 | - | 270 | WP_005464459.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| JHT19_RS09315 (JHT19_09295) | 2018307..2018561 | - | 255 | WP_005483180.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| JHT19_RS09320 (JHT19_09300) | 2018664..2018783 | - | 120 | WP_078581129.1 | DUF3265 domain-containing protein | - |
| JHT19_RS09325 (JHT19_09305) | 2018770..2019144 | - | 375 | WP_025787405.1 | hypothetical protein | - |
| JHT19_RS09330 (JHT19_09310) | 2019793..2020188 | - | 396 | WP_017449623.1 | ACT domain-containing protein | - |
| JHT19_RS09335 (JHT19_09315) | 2020342..2020737 | - | 396 | WP_114867630.1 | hypothetical protein | - |
| JHT19_RS09340 (JHT19_09320) | 2020837..2021757 | + | 921 | WP_010446562.1 | IS5-like element ISVa2 family transposase | - |
| JHT19_RS09345 (JHT19_09325) | 2021771..2021995 | - | 225 | WP_114867631.1 | hypothetical protein | - |
| JHT19_RS09350 (JHT19_09330) | 2022144..2022605 | - | 462 | WP_025787408.1 | RidA family protein | - |
| JHT19_RS09355 | 2022641..2022733 | - | 93 | Protein_1815 | DUF3265 domain-containing protein | - |
| JHT19_RS09360 (JHT19_09335) | 2022748..2023698 | - | 951 | WP_031815789.1 | DUF4062 domain-containing protein | - |
| JHT19_RS09365 (JHT19_09340) | 2023845..2024354 | - | 510 | WP_000100093.1 | ClbS/DfsB family four-helix bundle protein | - |
| JHT19_RS09370 (JHT19_09345) | 2024382..2024474 | - | 93 | WP_078581101.1 | DUF3265 domain-containing protein | - |
| JHT19_RS09375 (JHT19_09350) | 2024500..2025291 | - | 792 | WP_031815790.1 | hypothetical protein | - |
| JHT19_RS09380 (JHT19_09355) | 2025431..2025784 | - | 354 | WP_025555140.1 | glyoxalase/bleomycin resistance/dioxygenase family protein | - |
| JHT19_RS09385 (JHT19_09360) | 2025922..2026452 | - | 531 | WP_114867632.1 | hypothetical protein | - |
| JHT19_RS09390 (JHT19_09365) | 2026480..2026572 | - | 93 | WP_114867633.1 | DUF3265 domain-containing protein | - |
| JHT19_RS09395 (JHT19_09370) | 2026701..2027621 | + | 921 | WP_010446562.1 | IS5-like element ISVa2 family transposase | - |
| JHT19_RS09400 (JHT19_09375) | 2027912..2028604 | + | 693 | WP_045588479.1 | hypothetical protein | - |
| JHT19_RS09405 (JHT19_09380) | 2029345..2029704 | - | 360 | WP_228764114.1 | hypothetical protein | - |
| JHT19_RS09410 (JHT19_09385) | 2029634..2029795 | - | 162 | WP_078581078.1 | DUF3265 domain-containing protein | - |
| JHT19_RS09415 (JHT19_09390) | 2029841..2030125 | + | 285 | WP_005398409.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| JHT19_RS09420 (JHT19_09395) | 2030122..2030400 | + | 279 | WP_005398411.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| JHT19_RS09425 (JHT19_09400) | 2030542..2031324 | - | 783 | WP_005462179.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|