MGE detailed information
MGE type: Mobilizable plasmid MGE length: 170989 bp
Accession: NZ_CP068442 Location: 1..170989 Organism: Pantoea agglomerans strain ZJU23 Replicon: plasmid unnamed2
Accession: NZ_CP068442 Location: 1..170989 Organism: Pantoea agglomerans strain ZJU23 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JK642_RS20040 (JK642_19995) | 420..2078 | - | 1659 | WP_235765270.1 | Methyl-accepting chemotaxis protein I | VF |
| JK642_RS20045 (JK642_20000) | 2707..3036 | + | 330 | WP_010256979.1 | hypothetical protein | - |
| JK642_RS20050 | 3112..3345 | - | 234 | WP_060678836.1 | hypothetical protein | - |
| JK642_RS20055 (JK642_20005) | 4302..5531 | + | 1230 | WP_143991479.1 | diguanylate phosphodiesterase | - |
| JK642_RS20060 (JK642_20010) | 5691..5900 | + | 210 | WP_010256969.1 | CsbD family protein | - |
| JK642_RS20065 (JK642_20015) | 6096..6860 | + | 765 | WP_031593092.1 | MerR family transcriptional regulator | - |
| JK642_RS20070 (JK642_20020) | 6934..7422 | - | 489 | WP_039387365.1 | Hsp20 family protein | - |
| JK642_RS20075 (JK642_20025) | 7598..7837 | - | 240 | WP_022624236.1 | hypothetical protein | - |
| JK642_RS20080 (JK642_20030) | 8207..8431 | + | 225 | WP_010256955.1 | DUF3606 domain-containing protein | - |
| JK642_RS20085 (JK642_20035) | 8951..10735 | + | 1785 | WP_083070594.1 | GGDEF and EAL domain-containing protein | - |
| JK642_RS20090 (JK642_20040) | 10937..11146 | + | 210 | WP_069027144.1 | DUF1471 domain-containing protein | - |
| JK642_RS20095 (JK642_20045) | 11399..12586 | + | 1188 | WP_069027145.1 | diguanylate phosphodiesterase | - |
| JK642_RS20100 (JK642_20050) | 13949..15022 | - | 1074 | WP_031593098.1 | RepB family plasmid replication initiator protein | - |
| JK642_RS20105 (JK642_20055) | 17049..18251 | + | 1203 | WP_010256940.1 | Plasmid partition protein A | VF |
| JK642_RS20110 (JK642_20060) | 18248..19219 | + | 972 | WP_069027146.1 | ParB family protein | - |
| JK642_RS20115 (JK642_20065) | 19439..20365 | + | 927 | WP_069027147.1 | aminoimidazole riboside kinase | - |
| JK642_RS20120 (JK642_20070) | 20523..22058 | + | 1536 | WP_031593101.1 | carbohydrate porin | - |
| JK642_RS20125 (JK642_20075) | 22126..23496 | + | 1371 | WP_010256928.1 | sucrose-specific PTS transporter subunit IIBC | - |
| JK642_RS20130 (JK642_20080) | 23496..24905 | + | 1410 | WP_235765271.1 | sucrose-6-phosphate hydrolase | - |
| JK642_RS20135 (JK642_20085) | 24935..25939 | + | 1005 | WP_039387344.1 | LacI family DNA-binding transcriptional regulator | - |
| JK642_RS20140 (JK642_20090) | 25975..27165 | - | 1191 | WP_235765272.1 | cytochrome P450 | - |
| JK642_RS20145 (JK642_20095) | 27188..27733 | - | 546 | WP_031593108.1 | chorismate mutase | - |
| JK642_RS20150 (JK642_20100) | 28071..29237 | - | 1167 | WP_031593109.1 | zinc-dependent alcohol dehydrogenase | - |
| JK642_RS20155 (JK642_20105) | 29238..29771 | - | 534 | WP_064703105.1 | SRPBCC family protein | - |
| JK642_RS20160 (JK642_20110) | 29991..30236 | + | 246 | WP_031593111.1 | hypothetical protein | - |
| JK642_RS20165 (JK642_20115) | 30238..31149 | - | 912 | WP_235765273.1 | N-acetyltransferase | - |
| JK642_RS20170 (JK642_20120) | 31632..31841 | + | 210 | WP_064703104.1 | hypothetical protein | - |
| JK642_RS20175 (JK642_20125) | 32245..33828 | + | 1584 | WP_235765274.1 | sensor domain-containing diguanylate cyclase | - |
| JK642_RS20180 (JK642_20130) | 33849..35630 | - | 1782 | WP_235765275.1 | GGDEF and EAL domain-containing protein | - |
| JK642_RS20185 (JK642_20135) | 35977..37410 | + | 1434 | WP_235765276.1 | Methyl-accepting chemotaxis protein II | VF |
| JK642_RS20190 (JK642_20140) | 37773..38012 | + | 240 | WP_031593758.1 | hypothetical protein | - |
| JK642_RS20195 (JK642_20145) | 38418..40556 | + | 2139 | WP_115758446.1 | EAL domain-containing protein | - |
| JK642_RS20200 (JK642_20150) | 40604..41188 | - | 585 | WP_072036856.1 | GNAT family protein | - |
| JK642_RS20205 (JK642_20155) | 41449..42018 | + | 570 | WP_069027158.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| JK642_RS20210 (JK642_20160) | 42306..43772 | + | 1467 | WP_235765277.1 | YsnF/AvaK domain-containing protein | - |
| JK642_RS20215 (JK642_20165) | 43986..45104 | - | 1119 | Protein_35 | IS3 family transposase ISEhe4 | Transposase |
| JK642_RS20220 (JK642_20170) | 45178..45471 | - | 294 | WP_235765278.1 | DUF1493 family protein | - |
| JK642_RS20225 (JK642_20175) | 45465..45923 | - | 459 | WP_033786449.1 | hypothetical protein | - |
| JK642_RS20230 (JK642_20180) | 46581..49118 | + | 2538 | WP_235765279.1 | UvrABC system protein A | VF |
| JK642_RS20235 (JK642_20185) | 49218..49532 | + | 315 | WP_235765280.1 | HigA family addiction module antitoxin | - |
| JK642_RS20240 (JK642_20190) | 49584..50423 | - | 840 | WP_235765281.1 | MBL fold metallo-hydrolase | - |
| JK642_RS20245 (JK642_20195) | 50591..51904 | - | 1314 | WP_031593743.1 | CitMHS family transporter | - |
| JK642_RS20250 (JK642_20200) | 52244..53695 | - | 1452 | WP_235765282.1 | Flagellin | VF |
| JK642_RS20255 (JK642_20205) | 53900..54673 | - | 774 | WP_235765288.1 | Diacetyl reductase [(S)-acetoin forming] | VF |
| JK642_RS20260 (JK642_20210) | 54695..56374 | - | 1680 | WP_083070580.1 | acetolactate synthase AlsS | - |
| JK642_RS20265 (JK642_20215) | 56389..57171 | - | 783 | WP_235765283.1 | acetolactate decarboxylase | - |
| JK642_RS20270 (JK642_20220) | 57276..58181 | + | 906 | WP_069027166.1 | LysR family transcriptional regulator | - |
| JK642_RS20275 (JK642_20225) | 58253..58498 | + | 246 | WP_010256845.1 | hypothetical protein | - |
| JK642_RS20280 (JK642_20230) | 58549..61578 | - | 3030 | WP_235765284.1 | efflux RND transporter permease subunit | - |
| JK642_RS20285 (JK642_20235) | 61575..62708 | - | 1134 | WP_083070646.1 | efflux RND transporter periplasmic adaptor subunit | - |
| JK642_RS20290 (JK642_20240) | 62802..63971 | - | 1170 | WP_031594551.1 | ATP-binding protein | - |
| JK642_RS20295 (JK642_20245) | 63968..64666 | - | 699 | WP_235765285.1 | Response regulator ArlR | VF |
| JK642_RS20300 (JK642_20250) | 64796..65584 | + | 789 | WP_031594549.1 | MipA/OmpV family protein | - |
| JK642_RS20305 (JK642_20255) | 65791..66105 | - | 315 | WP_115758439.1 | PTS lactose/cellobiose transporter subunit IIA | - |
| JK642_RS20310 (JK642_20260) | 66102..67502 | - | 1401 | WP_069027172.1 | glycoside hydrolase family 1 protein | - |
| JK642_RS20315 (JK642_20265) | 67523..68851 | - | 1329 | WP_031594545.1 | PTS sugar transporter subunit IIC | - |
| JK642_RS20320 (JK642_20270) | 68848..69177 | - | 330 | WP_031594544.1 | PTS sugar transporter subunit IIB | - |
| JK642_RS20325 (JK642_20275) | 69466..70419 | + | 954 | WP_069027173.1 | LacI family DNA-binding transcriptional regulator | - |
| JK642_RS20330 (JK642_20280) | 70432..71316 | - | 885 | WP_235765286.1 | ROK family protein | - |
| JK642_RS20335 (JK642_20285) | 71557..72840 | - | 1284 | WP_083070641.1 | beta-ketoacyl-ACP synthase II | - |
| JK642_RS20340 (JK642_20290) | 73078..73692 | - | 615 | WP_069027176.1 | Fatty acid metabolism regulator protein | VF |
| JK642_RS20345 (JK642_20295) | 74016..74930 | + | 915 | WP_235765287.1 | winged helix-turn-helix domain-containing protein | - |
| JK642_RS20350 (JK642_20300) | 74927..75424 | + | 498 | WP_064703077.1 | FidL-like protein | - |
| JK642_RS20355 (JK642_20305) | 75513..75944 | - | 432 | WP_064703076.1 | DcrB-related protein | - |
| JK642_RS20360 (JK642_20310) | 75937..78120 | - | 2184 | WP_069027179.1 | peptidase domain-containing ABC transporter | - |
| JK642_RS20365 (JK642_20315) | 78138..79397 | - | 1260 | WP_064703074.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| JK642_RS20370 (JK642_20320) | 79423..80745 | - | 1323 | WP_069027181.1 | TolC family outer membrane protein | - |
| JK642_RS20375 (JK642_20325) | 80782..81444 | - | 663 | WP_083070639.1 | response regulator transcription factor | - |
| JK642_RS20380 (JK642_20330) | 81501..82562 | - | 1062 | WP_069027183.1 | S-fimbrial protein subunit SfaG | VF |
| JK642_RS20385 (JK642_20335) | 82575..85160 | - | 2586 | WP_083070638.1 | Outer membrane usher protein HtrE | VF |
| JK642_RS20390 (JK642_20340) | 85186..85923 | - | 738 | WP_071941196.1 | putative fimbrial chaperone YadV | VF |
| JK642_RS20395 (JK642_20345) | 85984..86514 | - | 531 | WP_069027186.1 | Major fimbrial subunit SMF-1 | VF |
| JK642_RS20400 (JK642_20350) | 86618..86845 | - | 228 | WP_083070637.1 | hypothetical protein | - |
| JK642_RS20405 (JK642_20355) | 86855..87172 | - | 318 | WP_069027187.1 | hypothetical protein | - |
| JK642_RS20410 (JK642_20360) | 88203..88793 | + | 591 | WP_031594259.1 | helix-turn-helix domain-containing protein | - |
| JK642_RS20415 (JK642_20365) | 88759..89466 | + | 708 | WP_223266000.1 | LuxR family transcriptional regulator | - |
| JK642_RS20420 (JK642_20370) | 89580..89858 | + | 279 | WP_235765251.1 | hypothetical protein | - |
| JK642_RS20425 (JK642_20375) | 90032..90334 | - | 303 | WP_223265999.1 | NirD/YgiW/YdeI family stress tolerance protein | - |
| JK642_RS20430 (JK642_20380) | 90390..93245 | - | 2856 | WP_235765252.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| JK642_RS20435 | 93952..94101 | + | 150 | WP_231115726.1 | DUF333 domain-containing protein | - |
| JK642_RS20440 (JK642_20390) | 94730..99019 | + | 4290 | WP_268965261.1 | S6 family peptidase | - |
| JK642_RS23500 (JK642_20395) | 99200..99403 | - | 204 | WP_031593862.1 | Hha/YmoA family nucleoid-associated regulatory protein | - |
| JK642_RS20450 (JK642_20400) | 99635..100087 | - | 453 | WP_069027191.1 | PACE efflux transporter | - |
| JK642_RS20455 (JK642_20405) | 100721..101731 | - | 1011 | WP_031593860.1 | LacI family DNA-binding transcriptional regulator | - |
| JK642_RS20460 (JK642_20410) | 101840..102853 | + | 1014 | WP_235765254.1 | Gfo/Idh/MocA family oxidoreductase | - |
| JK642_RS20465 (JK642_20415) | 102997..103533 | + | 537 | WP_069027193.1 | tetratricopeptide repeat protein | - |
| JK642_RS20470 (JK642_20420) | 103570..104070 | + | 501 | WP_115758297.1 | sigma-70 family RNA polymerase sigma factor | - |
| JK642_RS20475 (JK642_20425) | 104067..104852 | + | 786 | WP_064703465.1 | hypothetical protein | - |
| JK642_RS20480 (JK642_20430) | 104879..105457 | - | 579 | WP_031593855.1 | YceI family protein | - |
| JK642_RS20485 (JK642_20435) | 106156..107292 | + | 1137 | WP_083070629.1 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | VF |
| JK642_RS20490 (JK642_20440) | 107294..108277 | + | 984 | WP_064703463.1 | Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase | VF |
| JK642_RS20495 (JK642_20445) | 108274..110253 | + | 1980 | WP_235765256.1 | Bifunctional polymyxin resistance protein ArnA | VF |
| JK642_RS20500 (JK642_20450) | 110253..111155 | + | 903 | WP_069027199.1 | 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase | - |
| JK642_RS20505 (JK642_20455) | 111155..112822 | + | 1668 | WP_182688113.1 | lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase | - |
| JK642_RS20510 (JK642_20460) | 112822..113142 | + | 321 | WP_115758303.1 | 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE | - |
| JK642_RS20515 (JK642_20465) | 113139..113504 | + | 366 | WP_182688115.1 | 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF | - |
| JK642_RS20520 (JK642_20470) | 113609..114304 | - | 696 | WP_083070625.1 | haloacid dehalogenase type II | - |
| JK642_RS20525 (JK642_20475) | 114586..114753 | - | 168 | Protein_97 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JK642_RS20530 (JK642_20480) | 114950..115870 | + | 921 | WP_069027204.1 | Recombination-promoting nuclease RpnA | VF |
| JK642_RS20535 (JK642_20485) | 115967..116251 | - | 285 | Protein_99 | IS3 family transposase | - |
| JK642_RS20540 (JK642_20490) | 116271..116501 | - | 231 | Protein_100 | ISNCY family transposase ISKpn21 | Transposase |
| JK642_RS20545 (JK642_20495) | 116758..117576 | + | 819 | WP_235765257.1 | DUF4225 domain-containing protein | - |
| JK642_RS20550 (JK642_20500) | 117573..117887 | - | 315 | WP_143790132.1 | hypothetical protein | - |
| JK642_RS20555 (JK642_20505) | 118251..118538 | - | 288 | WP_010257115.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| JK642_RS20560 (JK642_20510) | 118535..118786 | - | 252 | WP_039387444.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| JK642_RS20565 (JK642_20515) | 119077..120210 | - | 1134 | WP_235765258.1 | glutathione-independent formaldehyde dehydrogenase | - |
| JK642_RS20570 (JK642_20520) | 120503..121453 | - | 951 | WP_182688119.1 | sulfonate ABC transporter substrate-binding protein | - |
| JK642_RS20575 (JK642_20525) | 121549..123438 | - | 1890 | WP_235765259.1 | Transcriptional regulatory protein ZraR | VF |
| JK642_RS20580 (JK642_20530) | 123713..124885 | + | 1173 | WP_235765260.1 | FMNH2-dependent alkanesulfonate monooxygenase | - |
| JK642_RS20585 (JK642_20535) | 124905..126317 | + | 1413 | WP_235765261.1 | FAD-dependent oxidoreductase | - |
| JK642_RS20590 (JK642_20540) | 126386..127795 | + | 1410 | WP_235765262.1 | LLM class flavin-dependent oxidoreductase | - |
| JK642_RS20595 (JK642_20545) | 128155..129615 | + | 1461 | WP_031593795.1 | MFS transporter | - |
| JK642_RS20600 (JK642_20550) | 129608..130825 | + | 1218 | WP_163658950.1 | monooxygenase | - |
| JK642_RS20605 (JK642_20555) | 131125..131595 | - | 471 | WP_069027119.1 | SgcJ/EcaC family oxidoreductase | - |
| JK642_RS20610 (JK642_20560) | 131865..132077 | + | 213 | WP_235765263.1 | hypothetical protein | - |
| JK642_RS20615 (JK642_20565) | 132541..133578 | + | 1038 | WP_064703442.1 | tyrosine-type recombinase/integrase | - |
| JK642_RS20620 (JK642_20570) | 133951..134763 | - | 813 | WP_083070613.1 | amidohydrolase family protein | - |
| JK642_RS20625 (JK642_20575) | 135122..136117 | + | 996 | WP_235765290.1 | alpha/beta hydrolase | - |
| JK642_RS20630 (JK642_20580) | 136243..138570 | - | 2328 | WP_235765264.1 | Fe(2+) transporter FeoB | VF |
| JK642_RS20635 (JK642_20585) | 138570..138794 | - | 225 | WP_235765265.1 | FeoA domain-containing protein | - |
| JK642_RS20640 (JK642_20590) | 139122..139592 | + | 471 | WP_031593782.1 | WbuC family cupin fold metalloprotein | - |
| JK642_RS20645 (JK642_20595) | 140026..140406 | - | 381 | WP_031593781.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| JK642_RS20650 (JK642_20600) | 141084..141503 | - | 420 | WP_235765266.1 | DUF1090 family protein | - |
| JK642_RS20655 (JK642_20605) | 141877..142113 | + | 237 | WP_031593778.1 | YgdI/YgdR family lipoprotein | - |
| JK642_RS20660 (JK642_20610) | 142177..142719 | + | 543 | WP_191939513.1 | YfaZ family outer membrane protein | - |
| JK642_RS20665 (JK642_20615) | 142832..143134 | + | 303 | WP_193586345.1 | hypothetical protein | - |
| JK642_RS20670 (JK642_20620) | 143187..143366 | - | 180 | WP_071941192.1 | DUF2256 domain-containing protein | - |
| JK642_RS20675 (JK642_20625) | 144549..144950 | + | 402 | WP_235765267.1 | H-NS family nucleoid-associated regulatory protein | - |
| JK642_RS20680 (JK642_20630) | 145179..145625 | - | 447 | WP_031593775.1 | VOC family protein | - |
| JK642_RS20685 (JK642_20635) | 145694..147256 | - | 1563 | WP_182687982.1 | Phytochrome-like protein cph2 | VF |
| JK642_RS20690 (JK642_20640) | 147532..147933 | + | 402 | WP_109653765.1 | H-NS family nucleoid-associated regulatory protein | - |
| JK642_RS20695 (JK642_20645) | 148025..149017 | - | 993 | WP_083070606.1 | HTH-type transcriptional regulator CdhR | VF |
| JK642_RS20700 (JK642_20650) | 149091..149870 | - | 780 | WP_039387394.1 | MBL fold metallo-hydrolase | - |
| JK642_RS20705 (JK642_20655) | 150221..150889 | + | 669 | WP_064703131.1 | DUF2268 domain-containing putative Zn-dependent protease | - |
| JK642_RS20710 (JK642_20660) | 150939..151955 | - | 1017 | WP_039387390.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| JK642_RS20715 (JK642_20665) | 152060..154033 | - | 1974 | WP_235765268.1 | Aerotaxis receptor | VF |
| JK642_RS20720 (JK642_20670) | 154374..154613 | + | 240 | WP_069027132.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| JK642_RS20725 (JK642_20675) | 154613..154900 | + | 288 | WP_069027133.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| JK642_RS20730 (JK642_20680) | 154945..155241 | - | 297 | WP_039387382.1 | hypothetical protein | - |
| JK642_RS20735 (JK642_20685) | 155443..155619 | + | 177 | WP_010257023.1 | KGG domain-containing protein | - |
| JK642_RS20740 (JK642_20690) | 155683..156579 | - | 897 | WP_069027134.1 | HTH-type transcriptional regulator PgrR | VF |
| JK642_RS20745 (JK642_20695) | 156713..157906 | + | 1194 | WP_069027135.1 | MFS transporter | - |
| JK642_RS20750 (JK642_20700) | 157975..159000 | + | 1026 | WP_182687976.1 | alpha/beta hydrolase | - |
| JK642_RS20755 (JK642_20705) | 159050..162154 | - | 3105 | WP_235765269.1 | Multidrug resistance protein MexB | VF |
| JK642_RS20760 (JK642_20710) | 162445..162612 | + | 168 | WP_009093121.1 | hypothetical protein | - |
| JK642_RS20765 (JK642_20715) | 162947..163294 | + | 348 | WP_003850685.1 | HNH nuclease YajD | - |
| JK642_RS20770 (JK642_20720) | 163468..163911 | - | 444 | WP_039387403.1 | cyclophilin-like fold protein | - |
| JK642_RS20775 (JK642_20725) | 164266..166593 | + | 2328 | WP_182687972.1 | FdhF/YdeP family oxidoreductase | - |
| JK642_RS20780 (JK642_20730) | 166830..167945 | + | 1116 | WP_115758455.1 | metallophosphoesterase | - |
| JK642_RS20785 (JK642_20735) | 168023..168823 | + | 801 | WP_115758454.1 | MBL fold metallo-hydrolase | - |
| JK642_RS20790 (JK642_20740) | 168879..170804 | - | 1926 | WP_137229094.1 | Methyl-accepting chemotaxis protein I | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|