MGE detailed information
MGE type: Genomic_island MGE length: 9351 bp
Accession: NZ_CP068283 Location: 4400356..4409706 Organism: Escherichia coli strain CY598 Replicon: chromosome
Accession: NZ_CP068283 Location: 4400356..4409706 Organism: Escherichia coli strain CY598 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JI738_RS21410 (4397087) | 4397087..4397806 | - | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
| JI738_RS21415 (4397803) | 4397803..4399434 | - | 1632 | WP_001216477.1 | sensor histidine kinase | - |
| JI738_RS21420 (4399615) | 4399615..4399845 | + | 231 | WP_000371704.1 | 4Fe-4S mono-cluster protein YjdI | - |
| JI738_RS21425 (4399857) | 4399857..4400129 | + | 273 | WP_000405651.1 | GNAT family N-acetyltransferase | - |
| JI738_RS21430 (4400356) | 4400356..4400652 | + | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| JI738_RS21435 (4400680) | 4400680..4400853 | + | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| JI738_RS21440 (4400972) | 4400972..4402489 | - | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| JI738_RS21445 (4402726) | 4402726..4404183 | - | 1458 | WP_000856829.1 | dipeptide/tripeptide permease DtpC | - |
| JI738_RS21450 (4404242) | 4404242..4406389 | - | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| JI738_RS21455 (4406469) | 4406469..4407803 | - | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| JI738_RS21460 (4408168) | 4408168..4409706 | - | 1539 | WP_001187173.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| JI738_RS21470 (4410505) | 4410505..4411080 | - | 576 | WP_001188520.1 | transcriptional regulator | - |
| JI738_RS21475 (4411117) | 4411117..4412814 | - | 1698 | WP_000068922.1 | protein-disulfide reductase DsbD | - |
| JI738_RS21480 (4412790) | 4412790..4413128 | - | 339 | WP_000883400.1 | divalent cation tolerance protein CutA | - |
| JI738_RS21485 (4413244) | 4413244..4414545 | - | 1302 | WP_000961959.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20087 | HG738867 | 4238430..4247780 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21458 | NC_007779 | 4357262..4366612 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23874 | NC_012759 | 4289342..4298692 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68443 | NZ_CP017979 | 4248154..4261393 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285032 | NZ_HG738867 | 4238430..4247780 | 0 |