MGE detailed information
MGE type: Genomic_island MGE length: 33416 bp
Accession: NZ_CP068283 Location: 2804676..2838091 Organism: Escherichia coli strain CY598 Replicon: chromosome
Accession: NZ_CP068283 Location: 2804676..2838091 Organism: Escherichia coli strain CY598 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JI738_RS13845 (2800312) | 2800312..2801973 | + | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| JI738_RS13850 (2802122) | 2802122..2802463 | + | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| JI738_RS13855 (2802525) | 2802525..2802815 | - | 291 | WP_001117838.1 | RnfH family protein | - |
| JI738_RS13860 (2802805) | 2802805..2803242 | - | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| JI738_RS13865 (2803413) | 2803413..2803895 | + | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| JI738_RS13875 (2804676) | 2804676..2805917 | + | 1242 | WP_000101723.1 | hypothetical protein ; Integrase | Integrase |
| JI738_RS13880 (2806161) | 2806161..2807117 | - | 957 | WP_000510827.1 | protein YfjH | - |
| JI738_RS13885 (2807161) | 2807161..2807373 | + | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| JI738_RS13890 (2807502) | 2807502..2808911 | + | 1410 | WP_000481742.1 | YfjI family protein | - |
| JI738_RS13895 (2809064) | 2809064..2809690 | + | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| JI738_RS13900 (2809868) | 2809868..2812057 | - | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| JI738_RS13905 (2812054) | 2812054..2813670 | - | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| JI738_RS13910 (2814030) | 2814030..2814293 | - | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| JI738_RS13915 (2814435) | 2814435..2815508 | + | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| JI738_RS13920 (2815501) | 2815501..2815872 | + | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| JI738_RS13925 (2816227) | 2816227..2817090 | + | 864 | WP_000787597.1 | GTPase family protein | - |
| JI738_RS13930 (2817182) | 2817182..2818003 | + | 822 | WP_000197391.1 | DUF932 domain-containing protein | - |
| JI738_RS13935 (2818220) | 2818220..2818921 | + | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| JI738_RS13940 (2818962) | 2818962..2819198 | + | 237 | WP_001144029.1 | protein YpjK | - |
| JI738_RS13945 (2819198) | 2819198..2819641 | + | 444 | WP_000824222.1 | lipoprotein YfjS | - |
| JI738_RS13950 (2819665) | 2819665..2820132 | + | 468 | WP_000702495.1 | protein YfjT | - |
| JI738_RS23355 (2820519) | 2820519..2820671 | - | 153 | Protein_2739 | arsenate reductase | - |
| JI738_RS13960 (2820684) | 2820684..2821693 | - | 1010 | Protein_2740 | arsenic transporter | - |
| JI738_RS13965 (2821835) | 2821835..2823538 | + | 1704 | WP_000896263.1 | protein YfjW | - |
| JI738_RS13975 (2825446) | 2825446..2825669 | + | 224 | Protein_2743 | DUF905 domain-containing protein | - |
| JI738_RS13980 (2825772) | 2825772..2826230 | + | 459 | WP_000211841.1 | antirestriction protein | - |
| JI738_RS13985 (2826239) | 2826239..2826721 | + | 483 | WP_001407480.1 | RadC family protein | - |
| JI738_RS13990 (2826730) | 2826730..2826930 | + | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| JI738_RS13995 (2826968) | 2826968..2827285 | + | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| JI738_RS14000 (2827306) | 2827306..2827635 | + | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| JI738_RS14005 (2827999) | 2827999..2832579 | - | 4581 | WP_010723187.1 | hypothetical protein | VF |
| JI738_RS14010 (2832644) | 2832644..2832763 | - | 120 | WP_001120794.1 | hypothetical protein | - |
| JI738_RS14015 (2832987) | 2832987..2833145 | - | 159 | Protein_2751 | recombinase family protein | - |
| JI738_RS14020 (2833491) | 2833491..2834864 | - | 1374 | Protein_2752 | DUF5507 domain-containing protein | - |
| JI738_RS14030 (2836250) | 2836250..2838502 | + | 2253 | Protein_2753 | alpha-amylase family glycosyl hydrolase | - |
| JI738_RS14035 (2838838) | 2838838..2839815 | + | 978 | WP_000993126.1 | glutarate dioxygenase GlaH | - |
| JI738_RS14040 (2839835) | 2839835..2841103 | + | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| JI738_RS14045 (2841126) | 2841126..2842574 | + | 1449 | WP_000772831.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0.002 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0.002 |