MGE detailed information
MGE type: Prophage MGE length: 56126 bp
Accession: NZ_CP068283 Location: 1649619..1705744 Organism: Escherichia coli strain CY598 Replicon: chromosome
Accession: NZ_CP068283 Location: 1649619..1705744 Organism: Escherichia coli strain CY598 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JI738_RS08095 (1645722) | 1645722..1646708 | - | 987 | Protein_1589 | GGDEF domain-containing protein | - |
| JI738_RS08100 (1646781) | 1646781..1647140 | - | 360 | WP_001191027.1 | DUF4186 domain-containing protein | - |
| JI738_RS08105 (1647140) | 1647140..1648066 | - | 927 | WP_000257409.1 | glutaminase B | - |
| JI738_RS08110 (1648130) | 1648130..1649518 | - | 1389 | WP_000156615.1 | succinate-semialdehyde dehydrogenase | - |
| JI738_RS08115 (1649619) | 1649619..1650500 | + | 882 | WP_000366501.1 | hypothetical protein | VF |
| JI738_RS08120 (1650578) | 1650578..1651693 | + | 1116 | WP_000258599.1 | putative protein YneK | - |
| JI738_RS08125 (1651843) | 1651843..1653033 | + | 1191 | WP_000210799.1 | L-arabinose MFS transporter | - |
| JI738_RS08130 (1653058) | 1653058..1653723 | - | 666 | WP_000885033.1 | NAAT family transporter MarC | - |
| JI738_RS08135 (1653935) | 1653935..1654369 | + | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
| JI738_RS08140 (1654389) | 1654389..1654772 | + | 384 | WP_000091199.1 | hypothetical protein | VF |
| JI738_RS08145 (1654804) | 1654804..1655022 | + | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| JI738_RS08150 (1655053) | 1655053..1655952 | - | 900 | WP_000087187.1 | O-acetylserine/cysteine exporter | - |
| JI738_RS08155 (1656147) | 1656147..1657334 | + | 1188 | WP_001054204.1 | efflux MFS transporter YdeE | - |
| JI738_RS08160 (1657461) | 1657461..1657556 | + | 96 | WP_000901367.1 | protein MgtS | - |
| JI738_RS08165 (1657556) | 1657556..1657661 | + | 106 | Protein_1603 | protein MgtT | - |
| JI738_RS08170 (1657776) | 1657776..1658666 | - | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| JI738_RS08175 (1658921) | 1658921..1659313 | - | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| JI738_RS08180 (1659589) | 1659589..1660107 | + | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| JI738_RS08185 (1660151) | 1660151..1662196 | - | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| JI738_RS08190 (1662333) | 1662333..1663079 | + | 747 | WP_000636571.1 | hypothetical protein | VF |
| JI738_RS08195 (1663168) | 1663168..1663854 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| JI738_RS08200 (1664031) | 1664031..1664234 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| JI738_RS08205 (1664269) | 1664269..1665729 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| JI738_RS08210 (1665818) | 1665818..1667185 | - | 1368 | Protein_1612 | MHS family MFS transporter | - |
| JI738_RS08215 (1667706) | 1667706..1667819 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| JI738_RS08220 (1667888) | 1667888..1668121 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| JI738_RS08225 (1668438) | 1668438..1669028 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| JI738_RS08230 (1669126) | 1669126..1669701 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| JI738_RS08235 (1669701) | 1669701..1670663 | - | 963 | WP_001027733.1 | phage tail protein | - |
| JI738_RS08240 (1670614) | 1670614..1671183 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| JI738_RS08245 (1671572) | 1671572..1671805 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| JI738_RS08250 (1671863) | 1671863..1672273 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| JI738_RS08255 (1672425) | 1672425..1672598 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| JI738_RS08260 (1672770) | 1672770..1672925 | - | 156 | WP_001309517.1 | protein YnfN | - |
| JI738_RS08265 (1673004) | 1673004..1673069 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| JI738_RS08270 (1673072) | 1673072..1673260 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| JI738_RS08275 (1673271) | 1673271..1673483 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| JI738_RS08280 (1673846) | 1673846..1674343 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| JI738_RS08285 (1674340) | 1674340..1674873 | - | 534 | WP_001092971.1 | lysozyme | - |
| JI738_RS08290 (1674870) | 1674870..1675181 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| JI738_RS08295 (1675186) | 1675186..1675401 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| JI738_RS08300 (1675621) | 1675621..1675791 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| JI738_RS08305 (1676155) | 1676155..1676370 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| JI738_RS08310 (1676671) | 1676671..1676883 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| JI738_RS08315 (1676938) | 1676938..1677027 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| JI738_RS08320 (1677305) | 1677305..1678057 | - | 753 | WP_001047135.1 | antitermination protein | - |
| JI738_RS08325 (1678071) | 1678071..1679120 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| JI738_RS08330 (1679122) | 1679122..1679400 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| JI738_RS08335 (1679467) | 1679467..1679718 | - | 252 | WP_000980994.1 | protein Rem | - |
| JI738_RS08340 (1679935) | 1679935..1680090 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| JI738_RS08345 (1680162) | 1680162..1680449 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| JI738_RS08350 (1680449) | 1680449..1680688 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| JI738_RS08355 (1680713) | 1680713..1681018 | + | 306 | WP_001326990.1 | protein YdfV | - |
| JI738_RS08360 (1681221) | 1681221..1681553 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| JI738_RS08365 (1681990) | 1681990..1682139 | - | 150 | WP_011443592.1 | protein YdfW | - |
| JI738_RS08370 (1682174) | 1682174..1682452 | - | 279 | Protein_1644 | hypothetical protein | - |
| JI738_RS08375 (1682436) | 1682436..1682666 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| JI738_RS08380 (1682750) | 1682750..1683157 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| JI738_RS08385 (1683324) | 1683324..1683479 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| JI738_RS23325 (1683481) | 1683481..1683609 | + | 129 | WP_000344964.1 | protein YdfB | - |
| JI738_RS08390 (1683639) | 1683639..1683857 | + | 219 | WP_001171942.1 | protein YdfC | - |
| JI738_RS08395 (1684425) | 1684425..1684613 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| JI738_RS08400 (1684610) | 1684610..1684801 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| JI738_RS08405 (1684894) | 1684894..1685661 | + | 768 | Protein_1652 | exonuclease | - |
| JI738_RS08410 (1685658) | 1685658..1686164 | + | 507 | Protein_1653 | IS3 family transposase IS2 | Transposase |
| JI738_RS08420 (1687492) | 1687492..1687689 | + | 198 | Protein_1655 | IS3 family transposase IS2 | Transposase |
| JI738_RS08425 (1687703) | 1687703..1688860 | + | 1158 | Protein_1656 | hypothetical protein ; Integrase | Integrase |
| JI738_RS08430 (1689048) | 1689048..1690067 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| JI738_RS08435 (1690079) | 1690079..1691293 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| JI738_RS08440 (1691499) | 1691499..1691825 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| JI738_RS08445 (1691960) | 1691960..1692301 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| JI738_RS08450 (1692336) | 1692336..1692896 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| JI738_RS08455 (1692899) | 1692899..1693609 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| JI738_RS08460 (1693717) | 1693717..1694022 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| JI738_RS08465 (1694221) | 1694221..1696647 | + | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| JI738_RS08470 (1696708) | 1696708..1699131 | + | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| JI738_RS08475 (1699142) | 1699142..1699759 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| JI738_RS08480 (1699761) | 1699761..1700615 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| JI738_RS08485 (1700658) | 1700658..1701272 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| JI738_RS08490 (1701431) | 1701431..1702723 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| JI738_RS08495 (1702676) | 1702676..1703371 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| JI738_RS08500 (1703496) | 1703496..1704716 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| JI738_RS08505 (1704851) | 1704851..1705744 | - | 894 | WP_001019525.1 | hypothetical protein | VF |
| JI738_RS08510 (1705851) | 1705851..1707104 | + | 1254 | WP_000091840.1 | MFS transporter | - |
| JI738_RS08520 (1707528) | 1707528..1707836 | + | 309 | WP_001340364.1 | acid resistance repetitive basic protein Asr | - |
| JI738_RS08525 (1707929) | 1707929..1708012 | + | 84 | WP_000233093.1 | stationary phase-induced protein | - |
| JI738_RS08530 (1708112) | 1708112..1708933 | + | 822 | WP_001260865.1 | serine protease | - |
| JI738_RS08535 (1708972) | 1708972..1709301 | - | 330 | WP_000046661.1 | multidrug/spermidine efflux SMR transporter subunit MdtI | - |
| JI738_RS08540 (1709288) | 1709288..1709653 | - | 366 | WP_000276149.1 | multidrug/spermidine efflux SMR transporter subunit MdtJ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli C | Prophage | TA75071 | NZ_CP020543 | 2249542..2301270 | 0.009 |