MGE detailed information
MGE type: Conjugative plasmid MGE length: 103093 bp
Accession: NZ_CP068044 Location: 1..103093 Organism: Escherichia coli strain XJW9B277 Replicon: plasmid pXJW9B277-I1
Accession: NZ_CP068044 Location: 1..103093 Organism: Escherichia coli strain XJW9B277 Replicon: plasmid pXJW9B277-I1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJE78_RS25575 (46) | 46..1077 | + | 1032 | WP_000907870.1 | plasmid replication initiator RepA | - |
| JJE78_RS25580 (1988) | 1988..2257 | + | 270 | WP_000079942.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| JJE78_RS25585 (2257) | 2257..2535 | + | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| JJE78_RS25590 (2581) | 2581..2793 | + | 213 | Protein_3 | 3'-5' exonuclease | - |
| JJE78_RS25595 (3349) | 3349..3771 | - | 423 | Protein_4 | serine hydrolase | - |
| JJE78_RS25600 (3818) | 3818..4522 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| JJE78_RS25605 (4802) | 4802..5662 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| JJE78_RS25610 (5832) | 5832..6587 | + | 756 | WP_012372818.1 | 16S rRNA (guanine(1405)-N(7))-methyltransferase | ARG |
| JJE78_RS25615 (6668) | 6668..7216 | - | 549 | WP_014342204.1 | cation:proton antiporter | - |
| JJE78_RS25620 (7279) | 7279..7629 | + | 351 | Protein_9 | 60 kDa chaperonin | VF |
| JJE78_RS25625 (7904) | 7904..9388 | + | 1485 | WP_015389030.1 | IS91 family transposase | - |
| JJE78_RS25630 (9621) | 9621..10013 | + | 393 | Protein_11 | mechanosensitive ion channel | - |
| JJE78_RS25635 (10041) | 10041..11576 | - | 1536 | WP_012372821.1 | hypothetical protein | ARG |
| JJE78_RS25640 (11971) | 11971..12651 | + | 681 | Protein_13 | IS91 family transposase ISAzo26 | Transposase |
| JJE78_RS25645 (12716) | 12716..13420 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| JJE78_RS25650 (13486) | 13486..14031 | + | 546 | Protein_15 | Tn3 family transposase TnpA_Tn3 | Transposase |
| JJE78_RS25655 (14028) | 14028..14849 | - | 822 | WP_233707387.1 | hypothetical protein | - |
| JJE78_RS25660 (15286) | 15286..16473 | - | 1188 | WP_001697863.1 | IS91 family transposase ISEc37 | Transposase |
| JJE78_RS25665 (16473) | 16473..16838 | - | 366 | WP_000124134.1 | hypothetical protein | - |
| JJE78_RS25670 (16986) | 16986..18278 | - | 1293 | Protein_19 | ISL3 family transposase ISEc38 | Transposase |
| JJE78_RS25675 (18288) | 18288..18764 | - | 477 | Protein_20 | IS256 family transposase | - |
| JJE78_RS25680 (18821) | 18821..21502 | - | 2682 | WP_000678689.1 | hypothetical protein | - |
| JJE78_RS25685 (22036) | 22036..22449 | + | 414 | WP_000465036.1 | hypothetical protein | - |
| JJE78_RS25690 (22451) | 22451..23230 | + | 780 | WP_001164198.1 | site-specific integrase | - |
| JJE78_RS25695 (23409) | 23409..24053 | + | 645 | WP_001144036.1 | ParA family protein | - |
| JJE78_RS25700 (24140) | 24140..24448 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| JJE78_RS25705 (24862) | 24862..25842 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| JJE78_RS25710 (25835) | 25835..26251 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| JJE78_RS25715 (26253) | 26253..27527 | - | 1275 | WP_000457492.1 | Y-family DNA polymerase | - |
| JJE78_RS25720 (27527) | 27527..27964 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| JJE78_RS25725 (27961) | 27961..28209 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| JJE78_RS25730 (28627) | 28627..29529 | + | 903 | WP_000273918.1 | DUF1281 domain-containing protein | - |
| JJE78_RS25735 (29526) | 29526..29837 | + | 312 | WP_010891263.1 | hypothetical protein | - |
| JJE78_RS25740 (29914) | 29914..30597 | + | 684 | WP_000086178.1 | DNA methylase | - |
| JJE78_RS25745 (30598) | 30598..30819 | + | 222 | WP_001104887.1 | hypothetical protein | - |
| JJE78_RS25750 (30779) | 30779..31265 | + | 487 | Protein_35 | DUF1380 family protein | - |
| JJE78_RS25755 (31316) | 31316..32086 | + | 771 | WP_001696732.1 | hypothetical protein | - |
| JJE78_RS25760 (32504) | 32504..32929 | + | 426 | WP_001198886.1 | antirestriction protein | - |
| JJE78_RS25765 (32976) | 32976..33398 | + | 423 | WP_000271729.1 | DUF1380 family protein | - |
| JJE78_RS25770 (33395) | 33395..33586 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| JJE78_RS26550 (33777) | 33777..34154 | - | 378 | WP_024126038.1 | hypothetical protein | - |
| JJE78_RS25785 (34356) | 34356..34883 | + | 528 | WP_001276110.1 | single-stranded DNA-binding protein | - |
| JJE78_RS25790 (34941) | 34941..35174 | + | 234 | WP_000006014.1 | DUF905 domain-containing protein | - |
| JJE78_RS25795 (35233) | 35233..37191 | + | 1959 | WP_001145453.1 | ParB/RepB/Spo0J family partition protein | - |
| JJE78_RS25800 (37246) | 37246..37680 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| JJE78_RS25805 (37677) | 37677..38396 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| JJE78_RS25810 (38393) | 38393..38989 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| JJE78_RS25815 (39452) | 39452..39952 | + | 501 | WP_000117609.1 | antirestriction protein ArdA | - |
| JJE78_RS25820 (40681) | 40681..41115 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| JJE78_RS25825 (41207) | 41207..41473 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| JJE78_RS25830 (41538) | 41538..42479 | + | 942 | WP_039023393.1 | Recombination-promoting nuclease RpnA | VF |
| JJE78_RS25835 (42541) | 42541..42711 | + | 171 | WP_000150325.1 | hypothetical protein | - |
| JJE78_RS25840 (42742) | 42742..42993 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| JJE78_RS25850 (43573) | 43573..44421 | + | 849 | WP_001077047.1 | DUF4942 domain-containing protein | - |
| JJE78_RS25855 (44506) | 44506..44841 | - | 336 | WP_000157098.1 | hypothetical protein | - |
| JJE78_RS25860 (45075) | 45075..45407 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| JJE78_RS25865 (45418) | 45418..48117 | + | 2700 | WP_001306778.1 | Protein TraI | Relaxase |
| JJE78_RS25870 (48154) | 48154..50445 | - | 2292 | WP_001289276.1 | F-type conjugative transfer protein TrbC | - |
| JJE78_RS25875 (50438) | 50438..51508 | - | 1071 | WP_000151582.1 | IncI1-type conjugal transfer protein TrbB | - |
| JJE78_RS25880 (51527) | 51527..52735 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (52915) | 52915..52975 | - | 61 | NuclAT_1 | - | - |
| - (52915) | 52915..52975 | - | 61 | NuclAT_1 | - | - |
| - (52915) | 52915..52975 | - | 61 | NuclAT_1 | - | - |
| - (52915) | 52915..52975 | - | 61 | NuclAT_1 | - | - |
| JJE78_RS25885 (53042) | 53042..53821 | - | 780 | WP_275450201.1 | protein FinQ | - |
| - (54336) | 54336..54398 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (54336) | 54336..54398 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (54336) | 54336..54398 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (54336) | 54336..54398 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| JJE78_RS25890 (54448) | 54448..54600 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| JJE78_RS25895 (54672) | 54672..54923 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| - (55310) | 55310..55361 | - | 52 | NuclAT_2 | - | - |
| - (55310) | 55310..55361 | - | 52 | NuclAT_2 | - | - |
| - (55310) | 55310..55361 | - | 52 | NuclAT_2 | - | - |
| - (55310) | 55310..55361 | - | 52 | NuclAT_2 | - | - |
| JJE78_RS25900 (55847) | 55847..56023 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| JJE78_RS25905 (56232) | 56232..56441 | - | 210 | Protein_64 | hemolysin expression modulator Hha | - |
| JJE78_RS25910 (56539) | 56539..57153 | - | 615 | WP_000578649.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| JJE78_RS25915 (57229) | 57229..59397 | - | 2169 | WP_000698360.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| JJE78_RS25920 (59494) | 59494..60078 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| JJE78_RS25925 (60107) | 60107..61309 | - | 1203 | WP_001189159.1 | IncI1-type conjugal transfer protein TraW | - |
| JJE78_RS25930 (61276) | 61276..61890 | - | 615 | WP_000337394.1 | IncI1-type conjugal transfer protein TraV | - |
| JJE78_RS25935 (61890) | 61890..64934 | - | 3045 | WP_216775796.1 | IncI1-type conjugal transfer protein TraU | - |
| JJE78_RS25940 (65024) | 65024..65824 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| JJE78_RS25945 (65808) | 65808..65996 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| JJE78_RS25950 (66060) | 66060..66464 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| JJE78_RS25955 (66515) | 66515..67042 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| JJE78_RS25960 (67042) | 67042..67746 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| JJE78_RS25965 (67746) | 67746..69035 | - | 1290 | WP_001271997.1 | conjugal transfer protein TraO | - |
| JJE78_RS25970 (69038) | 69038..70021 | - | 984 | WP_001191878.1 | hypothetical protein | VF |
| JJE78_RS25975 (70032) | 70032..70724 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| JJE78_RS25980 (70721) | 70721..71068 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| JJE78_RS25985 (71086) | 71086..74853 | - | 3768 | WP_001141539.1 | DUF5710 domain-containing protein | - |
| JJE78_RS25990 (74943) | 74943..75494 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| JJE78_RS25995 (75509) | 75509..75799 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| JJE78_RS26000 (75796) | 75796..76944 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| JJE78_RS26005 (76941) | 76941..77759 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| JJE78_RS26010 (77756) | 77756..78214 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| JJE78_RS26015 (78609) | 78609..79193 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| JJE78_RS26020 (79253) | 79253..80455 | - | 1203 | WP_000976349.1 | conjugal transfer protein TraF | - |
| JJE78_RS26025 (80541) | 80541..81365 | - | 825 | WP_001238927.1 | conjugal transfer protein TraE | - |
| JJE78_RS26030 (81516) | 81516..82670 | - | 1155 | WP_001139958.1 | site-specific integrase | - |
| JJE78_RS26035 (83862) | 83862..84110 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| JJE78_RS26040 (84107) | 84107..85399 | - | 1293 | WP_024198499.1 | hypothetical protein | VF |
| JJE78_RS26045 (85399) | 85399..86055 | - | 657 | WP_001389386.1 | hypothetical protein | VF |
| JJE78_RS26050 (86040) | 86040..86600 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| JJE78_RS26055 (86610) | 86610..87224 | - | 615 | WP_000959786.1 | hypothetical protein | VF |
| JJE78_RS26060 (87242) | 87242..88339 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| JJE78_RS26065 (88352) | 88352..89905 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| JJE78_RS26070 (89916) | 89916..90368 | - | 453 | WP_001247334.1 | hypothetical protein | VF |
| JJE78_RS26075 (90355) | 90355..91650 | - | 1296 | WP_000752772.1 | hypothetical protein | VF |
| JJE78_RS26080 (91643) | 91643..93325 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| JJE78_RS26085 (93339) | 93339..93776 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| JJE78_RS26090 (93776) | 93776..94843 | - | 1068 | WP_001302629.1 | hypothetical protein | VF |
| JJE78_RS26095 (95521) | 95521..96198 | + | 678 | WP_048217701.1 | IS66 family transposase ISCro1 | Transposase |
| JJE78_RS26100 (96198) | 96198..96545 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| JJE78_RS26105 (96565) | 96565..98136 | + | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| JJE78_RS26110 (98174) | 98174..98470 | - | 297 | WP_000494779.1 | hypothetical protein | - |
| JJE78_RS26115 (98646) | 98646..98900 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| JJE78_RS26120 (99062) | 99062..99613 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| JJE78_RS26125 (99786) | 99786..100469 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| JJE78_RS26130 (100723) | 100723..101256 | - | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| JJE78_RS26135 (101698) | 101698..101985 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| JJE78_RS26140 (101903) | 101903..102133 | - | 231 | WP_228772074.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|