MGE detailed information
MGE type: Conjugative plasmid MGE length: 75160 bp
Accession: NZ_CP068039 Location: 1..75160 Organism: Escherichia coli strain U90 Replicon: plasmid pU90-4
Accession: NZ_CP068039 Location: 1..75160 Organism: Escherichia coli strain U90 Replicon: plasmid pU90-4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JKF55_RS25545 () | 1..2181 | + | 2181 | WP_116794653.1 | type IV conjugative transfer system coupling protein TraD | - |
| JKF55_RS25550 () | 2181..7451 | + | 5271 | WP_000986925.1 | Multifunctional conjugation protein TraI | Relaxase |
| JKF55_RS25555 () | 7471..8214 | + | 744 | WP_000205703.1 | conjugal transfer pilus acetylase TraX | - |
| JKF55_RS25560 () | 8269..8829 | + | 561 | WP_000139309.1 | fertility inhibition protein FinO | - |
| JKF55_RS25565 () | 8965..9180 | + | 216 | WP_032166857.1 | hypothetical protein | - |
| JKF55_RS25570 () | 9424..9510 | + | 87 | Protein_5 | endonuclease | - |
| JKF55_RS25575 () | 9691..10002 | - | 312 | WP_000765906.1 | hypothetical protein | - |
| JKF55_RS25580 () | 10237..11808 | - | 1572 | WP_000381443.1 | IS66 family transposase IS679 | Transposase |
| JKF55_RS25585 () | 11828..12175 | - | 348 | WP_000624618.1 | IS66 family transposase ISCro1 | Transposase |
| JKF55_RS25590 () | 12175..12825 | - | 651 | WP_000993956.1 | IS66 family transposase IS679 | Transposase |
| - () | 13010..13071 | - | 62 | NuclAT_0 | - | - |
| - () | 13010..13071 | - | 62 | NuclAT_0 | - | - |
| - () | 13010..13071 | - | 62 | NuclAT_0 | - | - |
| - () | 13010..13071 | - | 62 | NuclAT_0 | - | - |
| JKF55_RS25600 () | 14376..14516 | + | 141 | WP_064717426.1 | type I toxin-antitoxin system Hok family toxin | - |
| JKF55_RS25605 () | 14796..15053 | + | 258 | WP_000083834.1 | replication regulatory protein RepA | - |
| JKF55_RS25610 () | 15287..15361 | + | 75 | WP_032319616.1 | RepA leader peptide Tap | - |
| JKF55_RS25615 () | 15354..16376 | + | 1023 | WP_000840938.1 | replication initiation protein | - |
| JKF55_RS25620 () | 17292..17561 | + | 270 | WP_000079930.1 | hypothetical protein | Antitoxin Detail |
| JKF55_RS25625 () | 17558..17839 | + | 282 | WP_000969996.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| JKF55_RS25630 () | 17885..18614 | + | 730 | Protein_17 | 3'-5' exonuclease | - |
| JKF55_RS25635 () | 18684..18929 | - | 246 | Protein_18 | IS3 family transposase IS911 | Transposase |
| JKF55_RS25640 () | 18946..20022 | - | 1077 | WP_039022834.1 | IS110 family transposase ISEc21 | Transposase |
| JKF55_RS25645 () | 20304..21163 | - | 860 | Protein_20 | IS3 family transposase | - |
| JKF55_RS25650 () | 21277..21673 | - | 397 | Protein_21 | ATP-binding protein | - |
| JKF55_RS25655 () | 22021..22395 | - | 375 | WP_015675362.1 | Heat-labile enterotoxin B chain | VF |
| JKF55_RS25660 () | 22392..23168 | - | 777 | WP_042634421.1 | Heat-labile enterotoxin A chain | VF |
| JKF55_RS25665 () | 24035..24747 | + | 713 | Protein_24 | hypothetical protein | - |
| JKF55_RS25670 () | 24959..25930 | + | 972 | WP_001078349.1 | IS481 family transposase ISEc18 | Transposase |
| JKF55_RS25675 () | 26022..26393 | - | 372 | Protein_26 | IS3 family transposase IS2 | Transposase |
| JKF55_RS25680 () | 26450..27131 | - | 682 | Protein_27 | IS3 family transposase ISKpn38 | Transposase |
| JKF55_RS25685 () | 27223..27986 | + | 764 | Protein_28 | IS3 family transposase IS2 | Transposase |
| JKF55_RS25690 () | 28114..28827 | - | 714 | WP_001423761.1 | IS3 family transposase ISKpn38 | Transposase |
| JKF55_RS25695 () | 29131..29829 | - | 699 | WP_107236375.1 | IS21 family transposase IS100kyp | Transposase |
| JKF55_RS25700 () | 29826..30835 | - | 1010 | Protein_31 | IS21 family transposase IS100kyp | Transposase |
| JKF55_RS25705 () | 30888..31987 | + | 1100 | Protein_32 | IS3 family transposase IS3F | Transposase |
| JKF55_RS25710 () | 32334..32828 | - | 495 | WP_000377907.1 | Transcriptional repressor MprA | VF |
| JKF55_RS25715 () | 33255..33590 | - | 336 | Protein_34 | toxin-activating lysine-acyltransferase | - |
| JKF55_RS25720 () | 34041..34150 | + | 110 | Protein_35 | IS5/IS1182 family transposase | - |
| JKF55_RS25725 () | 34673..34923 | + | 251 | Protein_36 | type II toxin-antitoxin system ParD family antitoxin | - |
| JKF55_RS25730 () | 35567..36307 | + | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| JKF55_RS25735 () | 36592..37569 | - | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| JKF55_RS25740 () | 38249..38497 | - | 249 | Protein_39 | transposase | - |
| JKF55_RS25745 () | 38496..38783 | - | 288 | WP_001270417.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| JKF55_RS25750 () | 38780..39031 | - | 252 | WP_001132895.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| JKF55_RS25755 () | 39204..39416 | - | 213 | WP_000402944.1 | hypothetical protein | - |
| JKF55_RS25760 () | 39790..40995 | + | 1206 | WP_000817634.1 | Plasmid partition protein A | VF |
| JKF55_RS25765 () | 40992..41954 | + | 963 | WP_000756327.1 | ParB/RepB/Spo0J family partition protein | - |
| JKF55_RS25770 () | 42188..42965 | + | 778 | Protein_45 | hypothetical protein | - |
| JKF55_RS25775 () | 43132..43275 | + | 144 | WP_000270807.1 | DUF1281 domain-containing protein | - |
| JKF55_RS25780 () | 43282..43641 | + | 360 | WP_001385002.1 | DUF1281 domain-containing protein | - |
| JKF55_RS25785 () | 43705..44016 | + | 312 | WP_001309256.1 | hypothetical protein | - |
| JKF55_RS25790 () | 44246..45583 | - | 1338 | Protein_49 | group II intron reverse transcriptase/maturase | - |
| JKF55_RS25795 () | 45668..46318 | + | 651 | WP_000993956.1 | IS66 family transposase IS679 | Transposase |
| JKF55_RS25800 () | 46318..46665 | + | 348 | WP_000624618.1 | IS66 family transposase ISCro1 | Transposase |
| JKF55_RS25805 () | 46685..48256 | + | 1572 | WP_000381443.1 | IS66 family transposase IS679 | Transposase |
| JKF55_RS25810 () | 48282..48492 | - | 211 | Protein_53 | hypothetical protein | - |
| JKF55_RS25815 () | 48552..48839 | + | 288 | WP_000107541.1 | hypothetical protein | - |
| JKF55_RS25820 () | 48957..49778 | + | 822 | WP_001424949.1 | DUF945 domain-containing protein | - |
| JKF55_RS25825 () | 50074..50676 | - | 603 | WP_077249085.1 | hypothetical protein | VF |
| JKF55_RS25830 () | 50998..51381 | + | 384 | WP_064986972.1 | relaxosome protein TraM | - |
| JKF55_RS25835 () | 51572..52219 | + | 648 | WP_000332521.1 | conjugal transfer transcriptional regulator TraJ | - |
| JKF55_RS25840 () | 52355..52570 | + | 216 | WP_071782156.1 | conjugal transfer relaxosome protein TraY | - |
| JKF55_RS25845 () | 52614..52979 | + | 366 | WP_000338819.1 | type IV conjugative transfer system pilin TraA | - |
| JKF55_RS25850 () | 52994..53305 | + | 312 | WP_000012125.1 | type IV conjugative transfer system protein TraL | - |
| JKF55_RS25855 () | 53327..53893 | + | 567 | WP_064986971.1 | type IV conjugative transfer system protein TraE | - |
| JKF55_RS25860 () | 53904..54608 | + | 705 | WP_032174952.1 | type-F conjugative transfer system secretin TraK | - |
| JKF55_RS25865 () | 54608..56056 | + | 1449 | WP_000146643.1 | conjugal transfer protein TraB | - |
| JKF55_RS25870 () | 56046..56630 | + | 585 | WP_001423675.1 | conjugal transfer protein TraP | - |
| JKF55_RS25875 () | 56569..56814 | + | 246 | WP_071602381.1 | conjugal transfer protein TrbD | - |
| JKF55_RS25880 () | 56826..57077 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| JKF55_RS25885 () | 57074..57589 | + | 516 | WP_000809905.1 | type IV conjugative transfer system lipoprotein TraV | - |
| JKF55_RS25890 () | 57724..57945 | + | 222 | WP_001278685.1 | conjugal transfer protein TraR | - |
| JKF55_RS25895 () | 58105..60732 | + | 2628 | WP_001064261.1 | type IV secretion system protein TraC | - |
| JKF55_RS25900 () | 60729..61115 | + | 387 | WP_000214057.1 | type-F conjugative transfer system protein TrbI | - |
| JKF55_RS25905 () | 61112..61744 | + | 633 | WP_001203748.1 | type-F conjugative transfer system protein TraW | - |
| JKF55_RS25910 () | 61741..62733 | + | 993 | WP_000830834.1 | conjugal transfer pilus assembly protein TraU | - |
| JKF55_RS25915 () | 62759..63222 | + | 464 | Protein_74 | ATP-binding protein | - |
| JKF55_RS25920 () | 63542..63994 | + | 453 | WP_001385157.1 | hypothetical protein | - |
| JKF55_RS25925 () | 64022..64660 | + | 639 | WP_001104087.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| JKF55_RS25930 () | 64657..66465 | + | 1809 | WP_168999426.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| JKF55_RS25935 () | 66492..66749 | + | 258 | WP_064987023.1 | conjugal transfer protein TrbE | - |
| JKF55_RS25940 () | 66742..67485 | + | 744 | WP_122997299.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| JKF55_RS25945 () | 67501..67848 | + | 348 | WP_001287903.1 | conjugal transfer protein TrbA | - |
| JKF55_RS25950 () | 67967..68251 | + | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| JKF55_RS25955 () | 68238..68792 | + | 555 | WP_000052621.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| JKF55_RS25960 () | 68722..69096 | + | 375 | WP_071782058.1 | P-type conjugative transfer protein TrbJ | - |
| JKF55_RS25965 () | 69050..69442 | + | 393 | WP_000126336.1 | F-type conjugal transfer protein TrbF | - |
| JKF55_RS25970 () | 69429..70802 | + | 1374 | WP_001137358.1 | conjugal transfer protein TraH | - |
| JKF55_RS25975 () | 70799..73609 | + | 2811 | WP_116794654.1 | conjugal transfer mating pair stabilization protein TraG | - |
| JKF55_RS25980 () | 73621..73932 | - | 312 | WP_000522220.1 | heavy metal-binding domain-containing protein | - |
| JKF55_RS25985 () | 74147..74840 | + | 694 | Protein_88 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|