MGE detailed information
MGE type: Conjugative plasmid MGE length: 107006 bp
Accession: NZ_CP067233 Location: 1..107006 Organism: Escherichia coli strain SBF45 Replicon: plasmid pSBF45a
Accession: NZ_CP067233 Location: 1..107006 Organism: Escherichia coli strain SBF45 Replicon: plasmid pSBF45a
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB20_RS21985 (46) | 46..1077 | + | 1032 | WP_000907866.1 | plasmid replication initiator RepA | - |
| JJB20_RS21990 (1775) | 1775..1990 | + | 216 | WP_024169051.1 | hypothetical protein | - |
| JJB20_RS23365 (1987) | 1987..2505 | + | 519 | WP_251362544.1 | hypothetical protein | - |
| JJB20_RS22000 (2512) | 2512..5478 | - | 2967 | WP_001138064.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| JJB20_RS22005 (5481) | 5481..6065 | - | 585 | WP_072679273.1 | recombinase family protein | - |
| JJB20_RS22010 (6075) | 6075..6779 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| JJB20_RS22015 (7165) | 7165..7581 | + | 417 | WP_034169466.1 | Glutathione transferase FosA | ARG |
| JJB20_RS22020 (7586) | 7586..8104 | - | 519 | WP_034169467.1 | FidL-like protein | - |
| JJB20_RS22025 (8104) | 8104..8775 | - | 672 | Protein_8 | winged helix-turn-helix domain-containing protein | - |
| JJB20_RS22030 (8829) | 8829..9533 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| JJB20_RS22035 (9800) | 9800..11236 | + | 1437 | WP_000105383.1 | glutathione synthase | - |
| JJB20_RS22040 (12274) | 12274..13002 | - | 729 | WP_152921961.1 | replication initiation protein | - |
| JJB20_RS22045 (13008) | 13008..13712 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| JJB20_RS22050 (13911) | 13911..14234 | - | 324 | WP_001175594.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| JJB20_RS22055 (14339) | 14339..15376 | + | 1038 | WP_044502555.1 | permease | - |
| JJB20_RS22060 (15669) | 15669..16286 | - | 618 | WP_000521603.1 | ProQ/FINO family protein | - |
| JJB20_RS22065 (16478) | 16478..18034 | - | 1557 | WP_000818556.1 | AAA family ATPase | - |
| JJB20_RS22070 (18297) | 18297..18887 | - | 591 | WP_000194575.1 | hypothetical protein | - |
| JJB20_RS22075 (18887) | 18887..19144 | - | 258 | WP_000343085.1 | hypothetical protein | - |
| JJB20_RS22080 (19498) | 19498..21636 | + | 2139 | WP_000350638.1 | AAA family ATPase | - |
| JJB20_RS22085 (21798) | 21798..22214 | - | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| JJB20_RS22090 (22211) | 22211..22441 | - | 231 | WP_001261287.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| JJB20_RS22095 (22737) | 22737..23027 | + | 291 | WP_000111771.1 | hypothetical protein | - |
| JJB20_RS22100 (23017) | 23017..23916 | + | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| JJB20_RS22105 (23966) | 23966..26191 | - | 2226 | WP_000698737.1 | P-loop NTPase fold protein | - |
| JJB20_RS22110 (26193) | 26193..27281 | - | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| JJB20_RS22115 (27833) | 27833..28183 | + | 351 | WP_060614377.1 | hypothetical protein | - |
| JJB20_RS22120 (28253) | 28253..28861 | + | 609 | WP_054170947.1 | hypothetical protein | - |
| JJB20_RS22125 (28929) | 28929..29711 | + | 783 | WP_054170945.1 | site-specific integrase | - |
| JJB20_RS22130 (29849) | 29849..30124 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| JJB20_RS22135 (30118) | 30118..30762 | - | 645 | WP_054170944.1 | division plane positioning ATPase MipZ | - |
| JJB20_RS22140 (30984) | 30984..31955 | + | 972 | WP_001103690.1 | plasmid segregation protein ParM | - |
| JJB20_RS22145 (31960) | 31960..32352 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| JJB20_RS22150 (32357) | 32357..33628 | - | 1272 | WP_054170942.1 | Y-family DNA polymerase | - |
| JJB20_RS22155 (33628) | 33628..34065 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| JJB20_RS22160 (34062) | 34062..34310 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| JJB20_RS22165 (34728) | 34728..35630 | + | 903 | WP_000273912.1 | DUF1281 domain-containing protein | - |
| JJB20_RS22170 (35627) | 35627..35938 | + | 312 | WP_077064875.1 | hypothetical protein | - |
| JJB20_RS22175 (36014) | 36014..36697 | + | 684 | WP_000086148.1 | DNA methylase | - |
| JJB20_RS22180 (36698) | 36698..36919 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| JJB20_RS22185 (36933) | 36933..37367 | + | 435 | WP_054170940.1 | DUF1380 family protein | - |
| JJB20_RS22190 (37413) | 37413..38189 | + | 777 | WP_054170938.1 | hypothetical protein | - |
| JJB20_RS22195 (38602) | 38602..39027 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| JJB20_RS22200 (39074) | 39074..39496 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| JJB20_RS22205 (39493) | 39493..39684 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| JJB20_RS22210 (39755) | 39755..40069 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| JJB20_RS22215 (40453) | 40453..40980 | + | 528 | WP_060614409.1 | single-stranded DNA-binding protein | - |
| JJB20_RS22220 (41038) | 41038..41271 | + | 234 | WP_000006012.1 | DUF905 family protein | - |
| JJB20_RS22225 (41330) | 41330..43288 | + | 1959 | WP_060614410.1 | ParB/RepB/Spo0J family partition protein | - |
| JJB20_RS22230 (43343) | 43343..43777 | + | 435 | WP_001535709.1 | conjugation system SOS inhibitor PsiB | - |
| JJB20_RS22235 (43774) | 43774..44493 | + | 720 | WP_001276263.1 | plasmid SOS inhibition protein A | - |
| JJB20_RS22240 (44490) | 44490..45086 | + | 597 | WP_000978009.1 | hypothetical protein | - |
| JJB20_RS22245 (45549) | 45549..46049 | + | 501 | WP_000117618.1 | antirestriction protein ArdA | - |
| JJB20_RS22250 (46778) | 46778..47212 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| JJB20_RS22255 (47305) | 47305..47571 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| JJB20_RS22260 (47636) | 47636..48538 | + | 903 | WP_054170928.1 | Recombination-promoting nuclease RpnA | VF |
| JJB20_RS22265 (48538) | 48538..48771 | + | 234 | WP_072189583.1 | hypothetical protein | - |
| JJB20_RS22270 (48802) | 48802..49053 | - | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| JJB20_RS22280 (49633) | 49633..50481 | + | 849 | WP_054170926.1 | DUF4942 domain-containing protein | - |
| JJB20_RS22285 (50568) | 50568..50903 | - | 336 | WP_000157100.1 | hypothetical protein | - |
| JJB20_RS22290 (51137) | 51137..51469 | + | 333 | WP_052938717.1 | IncI1-type relaxosome accessory protein NikA | - |
| JJB20_RS22295 (51480) | 51480..54179 | + | 2700 | WP_208769488.1 | Protein TraI | Relaxase |
| JJB20_RS22300 (54216) | 54216..56507 | - | 2292 | WP_021497839.1 | F-type conjugative transfer protein TrbC | - |
| JJB20_RS22305 (56500) | 56500..57570 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| JJB20_RS22310 (57589) | 57589..58797 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (58977) | 58977..59039 | - | 63 | NuclAT_0 | - | - |
| - (58977) | 58977..59039 | - | 63 | NuclAT_0 | - | - |
| - (58977) | 58977..59039 | - | 63 | NuclAT_0 | - | - |
| - (58977) | 58977..59039 | - | 63 | NuclAT_0 | - | - |
| JJB20_RS22315 (59089) | 59089..59241 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| JJB20_RS22320 (59313) | 59313..59564 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| JJB20_RS23500 (60063) | 60063..60158 | + | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| JJB20_RS22325 (60223) | 60223..60399 | - | 177 | WP_001054898.1 | hypothetical protein | - |
| JJB20_RS22330 (60799) | 60799..61008 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| JJB20_RS22335 (61080) | 61080..61730 | - | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| JJB20_RS22340 (61804) | 61804..63972 | - | 2169 | WP_054170920.1 | DotA/TraY family protein | - |
| JJB20_RS22345 (64069) | 64069..64653 | - | 585 | WP_001476649.1 | IncI1-type conjugal transfer protein TraX | - |
| JJB20_RS22350 (64682) | 64682..65884 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| JJB20_RS22355 (65851) | 65851..66465 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| JJB20_RS22360 (66465) | 66465..69509 | - | 3045 | WP_001024782.1 | IncI1-type conjugal transfer protein TraU | - |
| JJB20_RS22365 (69599) | 69599..70399 | - | 801 | WP_208769485.1 | IncI1-type conjugal transfer protein TraT | - |
| JJB20_RS22370 (70383) | 70383..70571 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| JJB20_RS22375 (70635) | 70635..71039 | - | 405 | WP_021497835.1 | IncI1-type conjugal transfer protein TraR | - |
| JJB20_RS22380 (71090) | 71090..71617 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| JJB20_RS22385 (71617) | 71617..72321 | - | 705 | WP_060614393.1 | IncI1-type conjugal transfer protein TraP | - |
| JJB20_RS22390 (72321) | 72321..73610 | - | 1290 | WP_001271991.1 | conjugal transfer protein TraO | - |
| JJB20_RS22395 (73613) | 73613..74596 | - | 984 | WP_052938673.1 | hypothetical protein | VF |
| JJB20_RS22400 (74607) | 74607..75299 | - | 693 | WP_000138551.1 | DotI/IcmL family type IV secretion protein | - |
| JJB20_RS22405 (75296) | 75296..75643 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| JJB20_RS22410 (75661) | 75661..79425 | - | 3765 | WP_021497833.1 | DUF5710 domain-containing protein | - |
| JJB20_RS22415 (79515) | 79515..80066 | - | 552 | WP_000014586.1 | Phospholipase D | VF |
| JJB20_RS22420 (80081) | 80081..80371 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| JJB20_RS22425 (80368) | 80368..81516 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| JJB20_RS22430 (81513) | 81513..82331 | - | 819 | WP_032220737.1 | hypothetical protein | VF |
| JJB20_RS22435 (82328) | 82328..82786 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| JJB20_RS22440 (83181) | 83181..83765 | - | 585 | WP_000977525.1 | histidine phosphatase family protein | - |
| JJB20_RS22445 (83825) | 83825..85027 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| JJB20_RS22450 (85113) | 85113..85724 | - | 612 | Protein_93 | conjugal transfer protein TraE | - |
| JJB20_RS22455 (85763) | 85763..87301 | - | 1539 | WP_001547431.1 | IS66 family transposase ISEc8 | Transposase |
| JJB20_RS22460 (87351) | 87351..87698 | - | 348 | WP_208769486.1 | IS66 family transposase ISEc8 | Transposase |
| JJB20_RS22465 (87695) | 87695..88075 | - | 381 | WP_072157534.1 | IS66 family transposase ISEc8 | Transposase |
| JJB20_RS22470 (88169) | 88169..88387 | - | 219 | Protein_97 | conjugal transfer protein TraE | - |
| JJB20_RS22475 (88538) | 88538..89692 | - | 1155 | WP_001139955.1 | site-specific integrase | - |
| JJB20_RS22480 (91213) | 91213..91461 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| JJB20_RS22485 (91458) | 91458..92750 | - | 1293 | WP_001619585.1 | hypothetical protein | VF |
| JJB20_RS22490 (92750) | 92750..93406 | - | 657 | WP_001193549.1 | hypothetical protein | VF |
| JJB20_RS22495 (93391) | 93391..93951 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| JJB20_RS22500 (93961) | 93961..94575 | - | 615 | WP_000908226.1 | hypothetical protein | VF |
| JJB20_RS22505 (94592) | 94592..95677 | - | 1086 | WP_054170959.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| JJB20_RS22510 (95690) | 95690..97243 | - | 1554 | WP_000362206.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| JJB20_RS22515 (97254) | 97254..97706 | - | 453 | WP_001247337.1 | hypothetical protein | VF |
| JJB20_RS22520 (97693) | 97693..98988 | - | 1296 | WP_000752780.1 | type 4b pilus protein PilO2 | - |
| JJB20_RS22525 (98981) | 98981..100663 | - | 1683 | WP_054170956.1 | Outer membrane lipoprotein BfpB | VF |
| JJB20_RS22530 (100677) | 100677..101114 | - | 438 | WP_000539811.1 | hypothetical protein | VF |
| JJB20_RS22535 (101114) | 101114..102181 | - | 1068 | WP_054170954.1 | hypothetical protein | VF |
| JJB20_RS22540 (103153) | 103153..103527 | - | 375 | WP_001690634.1 | PilI type IV pilus biogenesis protein | - |
| JJB20_RS22545 (103699) | 103699..104382 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| JJB20_RS22550 (104636) | 104636..105169 | - | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| JJB20_RS22555 (105611) | 105611..105898 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| JJB20_RS23375 (105936) | 105936..106094 | - | 159 | Protein_115 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|