MGE detailed information
MGE type: Conjugative plasmid MGE length: 113350 bp
Accession: NZ_CP066841 Location: 1..113350 Organism: Escherichia coli strain Ec-RL2-1X Replicon: plasmid pIncF4-A-B1
Accession: NZ_CP066841 Location: 1..113350 Organism: Escherichia coli strain Ec-RL2-1X Replicon: plasmid pIncF4-A-B1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH656_RS23795 (1) | 1..978 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| JH656_RS23800 (1263) | 1263..2003 | - | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| JH656_RS23805 (2124) | 2124..2302 | - | 179 | Protein_2 | serine/threonine protein kinase | - |
| JH656_RS23810 (2676) | 2676..3578 | - | 903 | WP_001312822.1 | hypothetical protein | VF |
| JH656_RS23815 (3647) | 3647..4756 | - | 1110 | WP_000771475.1 | SDR family oxidoreductase | - |
| JH656_RS23820 (5189) | 5189..6142 | - | 954 | WP_000280980.1 | Protease 7 | VF |
| JH656_RS23825 (6246) | 6246..6635 | + | 390 | WP_001332050.1 | IS110 family transposase ISEc20 | Transposase |
| JH656_RS23830 (7439) | 7439..7618 | - | 180 | Protein_7 | IS3 family transposase IS1400 | Transposase |
| JH656_RS23835 (7757) | 7757..8970 | + | 1214 | WP_242562026.1 | IS3 family transposase IS629 | Transposase |
| JH656_RS23840 (9248) | 9248..9945 | + | 698 | WP_224158172.1 | IS1-like element IS1A family transposase | - |
| JH656_RS23845 (10023) | 10023..11412 | - | 1390 | Protein_10 | ISNCY family transposase ISKpn21 | Transposase |
| JH656_RS23850 (11722) | 11722..11871 | - | 150 | Protein_11 | IS3 family transposase IS2 | Transposase |
| JH656_RS23855 (12049) | 12049..13242 | - | 1194 | WP_000450494.1 | GTP-binding protein | - |
| JH656_RS23860 (14465) | 14465..15701 | - | 1237 | Protein_13 | IS3 family transposase IS2 | Transposase |
| JH656_RS23865 (16328) | 16328..16621 | + | 294 | WP_000738422.1 | increased serum survival lipoprotein Iss | - |
| JH656_RS23875 (16679) | 16679..16878 | - | 200 | Protein_15 | lysis protein | - |
| JH656_RS23880 (17432) | 17432..18456 | + | 1025 | Protein_16 | integrase core domain-containing protein | - |
| JH656_RS23885 (19767) | 19767..20882 | + | 1116 | WP_001318220.1 | Elloramycin glycosyltransferase ElmGT | VF |
| JH656_RS23890 (21022) | 21022..24681 | + | 3660 | WP_001111199.1 | Multidrug efflux ATP-binding/permease protein | VF |
| JH656_RS23895 (24785) | 24785..26014 | + | 1230 | WP_000933675.1 | Enterochelin esterase | VF |
| JH656_RS23900 (26099) | 26099..27055 | + | 957 | WP_000271276.1 | Ferri-bacillibactin esterase BesA | VF |
| JH656_RS23905 (27100) | 27100..29277 | - | 2178 | WP_001222186.1 | Ferric enterobactin receptor | VF |
| JH656_RS23910 (29547) | 29547..30244 | + | 698 | WP_151351650.1 | IS1-like element IS1A family transposase | - |
| JH656_RS23915 (30261) | 30261..30416 | - | 156 | Protein_23 | colicin V | - |
| JH656_RS23920 (30394) | 30394..30630 | - | 237 | WP_014640552.1 | colicin V immunity protein | - |
| JH656_RS23925 (31172) | 31172..31375 | - | 204 | Protein_25 | hypothetical protein | - |
| JH656_RS23930 (31548) | 31548..31715 | + | 168 | Protein_26 | colicin-B | - |
| JH656_RS23935 (31733) | 31733..32260 | - | 528 | WP_000203272.1 | colicin B immunity protein | - |
| JH656_RS23940 (32504) | 32504..33319 | + | 816 | WP_001312845.1 | lipid II-degrading bacteriocin colicin M | - |
| JH656_RS23945 (33369) | 33369..33722 | - | 354 | WP_000864812.1 | colicin M immunity protein | - |
| JH656_RS23950 (33900) | 33900..34691 | - | 792 | WP_000016493.1 | site-specific integrase | - |
| JH656_RS23955 (34688) | 34688..35377 | - | 690 | WP_000796228.1 | hypothetical protein | - |
| JH656_RS23960 (35421) | 35421..35771 | - | 351 | WP_000493379.1 | hypothetical protein | - |
| JH656_RS23965 (36304) | 36304..37230 | + | 927 | WP_080077783.1 | hypothetical protein | - |
| JH656_RS23970 (37280) | 37280..37534 | + | 255 | WP_059291112.1 | hypothetical protein | - |
| JH656_RS23975 (38032) | 38032..38376 | + | 345 | WP_087601730.1 | abortive infection protein | - |
| JH656_RS23980 (38550) | 38550..39551 | - | 1002 | WP_000774874.1 | DUF4238 domain-containing protein | - |
| JH656_RS23985 (39902) | 39902..40159 | + | 258 | WP_000371888.1 | hypothetical protein | - |
| JH656_RS23990 (40159) | 40159..40749 | + | 591 | WP_000194553.1 | hypothetical protein | - |
| JH656_RS23995 (40769) | 40769..41116 | - | 348 | WP_024148462.1 | DUF6404 family protein | - |
| JH656_RS24000 (41201) | 41201..41479 | - | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| JH656_RS24005 (41479) | 41479..41748 | - | 270 | WP_042021804.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| JH656_RS24010 (41803) | 41803..41961 | - | 159 | WP_000829588.1 | hypothetical protein | - |
| JH656_RS24015 (42664) | 42664..43521 | - | 858 | WP_001697864.1 | incFII family plasmid replication initiator RepA | - |
| JH656_RS24645 (43514) | 43514..43588 | - | 75 | WP_001375168.1 | RepA leader peptide Tap | - |
| JH656_RS24030 (43824) | 43824..44081 | - | 258 | WP_000083826.1 | replication regulatory protein RepA | - |
| JH656_RS24035 (44321) | 44321..44911 | - | 591 | WP_000766805.1 | DUF2726 domain-containing protein | - |
| JH656_RS24040 (44949) | 44949..45158 | - | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| JH656_RS24045 (45204) | 45204..45665 | - | 462 | WP_001233838.1 | thermonuclease family protein | - |
| JH656_RS24050 (45910) | 45910..46122 | - | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| JH656_RS24055 (46251) | 46251..46811 | - | 561 | WP_000139321.1 | fertility inhibition protein FinO | - |
| JH656_RS24060 (46914) | 46914..47774 | - | 861 | WP_000704523.1 | putative protein YcjY | VF |
| JH656_RS24065 (47833) | 47833..48579 | - | 747 | WP_011251385.1 | conjugal transfer pilus acetylase TraX | - |
| JH656_RS24070 (48599) | 48599..53869 | - | 5271 | WP_011251384.1 | Multifunctional conjugation protein TraI | Relaxase |
| JH656_RS24075 (53869) | 53869..56067 | - | 2199 | WP_011402783.1 | type IV conjugative transfer system coupling protein TraD | - |
| JH656_RS24080 (56320) | 56320..57051 | - | 732 | WP_000850424.1 | conjugal transfer complement resistance protein TraT | - |
| JH656_RS24085 (57083) | 57083..57586 | - | 504 | WP_000605510.1 | hypothetical protein | - |
| JH656_RS24090 (57601) | 57601..59994 | - | 2394 | Protein_57 | conjugal transfer mating-pair stabilization protein TraG | - |
| JH656_RS24100 (61305) | 61305..61736 | - | 432 | Protein_59 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| JH656_RS24105 (61733) | 61733..63106 | - | 1374 | WP_001137358.1 | conjugal transfer pilus assembly protein TraH | - |
| JH656_RS24110 (63106) | 63106..63468 | - | 363 | WP_011251381.1 | P-type conjugative transfer protein TrbJ | - |
| JH656_RS24115 (63398) | 63398..63943 | - | 546 | WP_000052618.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| JH656_RS24120 (63930) | 63930..64214 | - | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| JH656_RS24125 (64333) | 64333..64680 | - | 348 | WP_011251380.1 | conjugal transfer protein TrbA | - |
| JH656_RS24130 (64696) | 64696..65439 | - | 744 | WP_001030390.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| JH656_RS24135 (65432) | 65432..65689 | - | 258 | WP_000864328.1 | conjugal transfer protein TrbE | - |
| JH656_RS24140 (65716) | 65716..67524 | - | 1809 | WP_011251379.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| JH656_RS24145 (67521) | 67521..68159 | - | 639 | WP_000777692.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| JH656_RS24150 (68168) | 68168..69160 | - | 993 | WP_001712363.1 | conjugal transfer pilus assembly protein TraU | - |
| JH656_RS24155 (69157) | 69157..69789 | - | 633 | WP_011251377.1 | type-F conjugative transfer system protein TraW | - |
| JH656_RS24160 (69786) | 69786..70172 | - | 387 | WP_011251376.1 | type-F conjugative transfer system protein TrbI | - |
| JH656_RS24165 (70169) | 70169..72799 | - | 2631 | WP_011251375.1 | type IV secretion system protein TraC | - |
| JH656_RS24170 (72925) | 72925..73287 | - | 363 | WP_000836686.1 | hypothetical protein | - |
| JH656_RS24175 (73315) | 73315..73530 | - | 216 | WP_000556749.1 | hypothetical protein | - |
| JH656_RS24180 (73610) | 73610..74083 | - | 474 | WP_000549595.1 | hypothetical protein | - |
| JH656_RS24185 (74101) | 74101..75309 | - | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| JH656_RS24190 (75417) | 75417..75587 | - | 171 | Protein_77 | conjugal transfer protein TraR | - |
| JH656_RS24195 (75705) | 75705..76220 | - | 516 | WP_000809838.1 | type IV conjugative transfer system lipoprotein TraV | - |
| JH656_RS24200 (76217) | 76217..76468 | - | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| JH656_RS24205 (76465) | 76465..76782 | - | 318 | WP_001057292.1 | conjugal transfer protein TrbD | - |
| JH656_RS24210 (76779) | 76779..77351 | - | 573 | WP_000002794.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| JH656_RS24215 (77341) | 77341..78768 | - | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| JH656_RS24220 (78768) | 78768..79496 | - | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| JH656_RS24225 (79483) | 79483..80049 | - | 567 | WP_011251373.1 | type IV conjugative transfer system protein TraE | - |
| JH656_RS24230 (80071) | 80071..80382 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| JH656_RS24235 (80397) | 80397..80756 | - | 360 | WP_000340272.1 | type IV conjugative transfer system pilin TraA | - |
| JH656_RS24240 (80790) | 80790..81017 | - | 228 | WP_001254385.1 | conjugal transfer relaxosome protein TraY | - |
| JH656_RS24245 (81111) | 81111..81797 | - | 687 | WP_000332493.1 | PAS domain-containing protein | - |
| JH656_RS24250 (81988) | 81988..82371 | - | 384 | WP_000124979.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| JH656_RS24255 (82648) | 82648..83295 | + | 648 | WP_000615259.1 | hypothetical protein | VF |
| JH656_RS24260 (83592) | 83592..84413 | - | 822 | WP_001234469.1 | DUF932 domain-containing protein | - |
| JH656_RS24265 (84534) | 84534..84821 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| JH656_RS24270 (84846) | 84846..85052 | - | 207 | WP_000547971.1 | hypothetical protein | - |
| JH656_RS24275 (85122) | 85122..85295 | + | 174 | Protein_94 | hypothetical protein | - |
| JH656_RS24280 (85293) | 85293..85523 | - | 231 | WP_001426396.1 | hypothetical protein | - |
| JH656_RS24285 (85742) | 85742..85867 | - | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| JH656_RS24290 (85809) | 85809..85958 | - | 150 | Protein_97 | plasmid maintenance protein Mok | - |
| - (85946) | 85946..86011 | - | 66 | NuclAT_1 | - | - |
| - (85944) | 85944..86168 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (85944) | 85944..86168 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (85944) | 85944..86168 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (85944) | 85944..86168 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (85944) | 85944..86168 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| JH656_RS24295 (85980) | 85980..86168 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| JH656_RS24300 (86137) | 86137..86899 | - | 763 | Protein_99 | plasmid SOS inhibition protein A | - |
| JH656_RS24305 (86896) | 86896..87330 | - | 435 | WP_000845873.1 | conjugation system SOS inhibitor PsiB | - |
| JH656_RS24310 (87385) | 87385..89343 | - | 1959 | WP_000117210.1 | ParB/RepB/Spo0J family partition protein | - |
| JH656_RS24315 (89408) | 89408..89641 | - | 234 | WP_000006030.1 | DUF905 family protein | - |
| JH656_RS24320 (89703) | 89703..90242 | - | 540 | WP_000290812.1 | single-stranded DNA-binding protein | - |
| JH656_RS24325 (90268) | 90268..90474 | - | 207 | WP_000547971.1 | hypothetical protein | - |
| JH656_RS24330 (90715) | 90715..90942 | - | 228 | WP_071594011.1 | hypothetical protein | - |
| JH656_RS24335 (91094) | 91094..91657 | - | 564 | WP_001330829.1 | class I SAM-dependent methyltransferase | - |
| JH656_RS24340 (91705) | 91705..93066 | - | 1362 | WP_196105943.1 | DUF3560 domain-containing protein | - |
| JH656_RS24345 (93118) | 93118..93348 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| JH656_RS24350 (93865) | 93865..94113 | + | 249 | WP_075660698.1 | hypothetical protein | - |
| JH656_RS24355 (94386) | 94386..94577 | - | 192 | WP_001027519.1 | hypothetical protein | - |
| JH656_RS24360 (94574) | 94574..94996 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| JH656_RS24365 (95043) | 95043..95468 | - | 426 | WP_024214837.1 | antirestriction protein | - |
| JH656_RS24370 (95870) | 95870..96841 | + | 972 | WP_000082154.1 | IS110 family transposase ISEc32 | Transposase |
| JH656_RS24380 (97642) | 97642..97977 | - | 336 | WP_000343070.1 | hypothetical protein | - |
| JH656_RS24385 (98046) | 98046..98393 | - | 348 | WP_001350917.1 | hypothetical protein | - |
| JH656_RS24390 (98390) | 98390..98559 | - | 170 | Protein_117 | hypothetical protein | - |
| JH656_RS24395 (99153) | 99153..100124 | - | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| JH656_RS24400 (100124) | 100124..101290 | - | 1167 | WP_001238646.1 | Sporulation initiation inhibitor protein Soj | VF |
| JH656_RS24410 (102443) | 102443..103945 | - | 1503 | WP_000715078.1 | hypothetical protein | - |
| JH656_RS24415 (104590) | 104590..105015 | - | 426 | WP_012300440.1 | hypothetical protein | - |
| JH656_RS24420 (105157) | 105157..105636 | + | 480 | WP_000190053.1 | hypothetical protein | - |
| JH656_RS24425 (106076) | 106076..106327 | + | 252 | WP_000163248.1 | hypothetical protein | - |
| JH656_RS24430 (106300) | 106300..106431 | - | 132 | Protein_125 | phosphopyruvate hydratase | - |
| JH656_RS24435 (106429) | 106429..106686 | + | 258 | Protein_126 | Tn3 family transposase | - |
| JH656_RS24440 (106920) | 106920..107777 | - | 858 | WP_000968140.1 | Manganese transport system membrane protein MntB | ARG |
| JH656_RS24445 (107774) | 107774..108631 | - | 858 | WP_000992806.1 | Manganese transport system membrane protein MntB | ARG |
| JH656_RS24450 (108628) | 108628..109455 | - | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| JH656_RS24455 (109455) | 109455..110369 | - | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| JH656_RS24460 (110725) | 110725..111422 | + | 698 | WP_236923169.1 | IS1-like element IS1B family transposase | - |
| JH656_RS24465 (111602) | 111602..112115 | - | 514 | Protein_132 | DUF4113 domain-containing protein | - |
| JH656_RS24470 (112176) | 112176..112280 | - | 105 | Protein_133 | AAA family ATPase | - |
| JH656_RS24475 (112282) | 112282..112605 | - | 324 | Protein_134 | IS21 family transposase IS21 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|