MGE detailed information
MGE type: Conjugative plasmid MGE length: 95616 bp
Accession: NZ_CP066838 Location: 1..95616 Organism: Escherichia coli strain Ec-FL1-1X Replicon: plasmid pIncI1_STnovel
Accession: NZ_CP066838 Location: 1..95616 Organism: Escherichia coli strain Ec-FL1-1X Replicon: plasmid pIncI1_STnovel
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH476_RS25310 (1) | 1..1032 | + | 1032 | WP_000907863.1 | plasmid replication initiator RepA | - |
| JH476_RS25315 (2108) | 2108..2392 | + | 285 | WP_024186313.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| JH476_RS25320 (2392) | 2392..2667 | + | 276 | WP_000421257.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| JH476_RS25325 (2773) | 2773..2976 | + | 204 | Protein_3 | hypothetical protein | - |
| JH476_RS25330 (3245) | 3245..3511 | - | 267 | WP_000627834.1 | hypothetical protein | - |
| JH476_RS25335 (3580) | 3580..4005 | - | 426 | WP_001389390.1 | hypothetical protein | - |
| JH476_RS25340 (4061) | 4061..4663 | - | 603 | WP_000517689.1 | ProQ/FINO family protein | - |
| JH476_RS25345 (5017) | 5017..6363 | + | 1347 | WP_001132019.1 | protein YagA | - |
| JH476_RS25350 (6642) | 6642..8522 | + | 1881 | WP_001283356.1 | colicin Ia central receptor-binding domain-containing protein | - |
| JH476_RS25355 (8540) | 8540..8887 | - | 348 | WP_000762578.1 | colicin E1 family microcin immunity protein | - |
| JH476_RS25360 (9006) | 9006..9353 | + | 348 | WP_000142451.1 | DUF6404 family protein | - |
| JH476_RS25365 (9373) | 9373..9963 | - | 591 | WP_016231902.1 | hypothetical protein | - |
| JH476_RS25370 (9963) | 9963..10220 | - | 258 | WP_001542562.1 | hypothetical protein | - |
| JH476_RS25375 (10753) | 10753..11166 | + | 414 | WP_016231903.1 | hypothetical protein | - |
| JH476_RS25380 (11168) | 11168..11953 | + | 786 | WP_001596998.1 | site-specific integrase | - |
| JH476_RS25385 (12555) | 12555..13187 | + | 633 | WP_000312331.1 | ParA family protein | - |
| JH476_RS25390 (13187) | 13187..13561 | + | 375 | WP_000752652.1 | hypothetical protein | - |
| JH476_RS25395 (13800) | 13800..14774 | + | 975 | WP_001217833.1 | plasmid segregation protein ParM | - |
| JH476_RS25400 (14778) | 14778..15170 | + | 393 | WP_000272015.1 | plasmid partitioning/stability family protein | - |
| JH476_RS25405 (15254) | 15254..15433 | - | 180 | WP_000618107.1 | hypothetical protein | - |
| JH476_RS25410 (15851) | 15851..16753 | + | 903 | WP_000273912.1 | DUF1281 domain-containing protein | - |
| JH476_RS25415 (16750) | 16750..17061 | + | 312 | WP_014640311.1 | hypothetical protein | - |
| JH476_RS25420 (17137) | 17137..17820 | + | 684 | WP_001596996.1 | DNA methylase | - |
| JH476_RS25425 (17821) | 17821..18042 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| JH476_RS25430 (18056) | 18056..18490 | + | 435 | WP_000274500.1 | DUF1380 family protein | - |
| JH476_RS25435 (18536) | 18536..19312 | + | 777 | WP_016231905.1 | hypothetical protein | - |
| JH476_RS25440 (19724) | 19724..20149 | + | 426 | WP_001198924.1 | antirestriction protein | - |
| JH476_RS25445 (20196) | 20196..20618 | + | 423 | WP_000271744.1 | DUF1380 family protein | - |
| JH476_RS25450 (20615) | 20615..20806 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| JH476_RS25455 (20877) | 20877..21191 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| JH476_RS25460 (22227) | 22227..24128 | + | 1902 | WP_000936285.1 | group II intron reverse transcriptase/maturase | - |
| JH476_RS25465 (24278) | 24278..24763 | + | 486 | WP_031222835.1 | single-stranded DNA-binding protein | - |
| JH476_RS25470 (24821) | 24821..25054 | + | 234 | WP_000005985.1 | DUF905 family protein | - |
| JH476_RS25475 (25113) | 25113..27071 | + | 1959 | WP_024225029.1 | ParB/RepB/Spo0J family partition protein | - |
| JH476_RS25480 (27126) | 27126..27560 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| JH476_RS25485 (27557) | 27557..28276 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| JH476_RS25490 (28273) | 28273..28869 | + | 597 | WP_000978017.1 | hypothetical protein | - |
| JH476_RS25495 (29332) | 29332..29832 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| JH476_RS25500 (29858) | 29858..30316 | + | 459 | WP_162771340.1 | hypothetical protein | - |
| JH476_RS25505 (30560) | 30560..30994 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| JH476_RS25510 (31086) | 31086..31352 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| JH476_RS25515 (31417) | 31417..32355 | + | 939 | WP_000038336.1 | hypothetical protein | VF |
| JH476_RS25520 (32355) | 32355..32600 | + | 246 | WP_001260884.1 | hypothetical protein | - |
| JH476_RS25525 (32631) | 32631..32882 | - | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| JH476_RS26080 (32916) | 32916..33224 | - | 309 | WP_217431400.1 | hypothetical protein | - |
| JH476_RS25535 (33464) | 33464..34312 | + | 849 | WP_016231886.1 | DUF4942 domain-containing protein | - |
| JH476_RS25540 (34398) | 34398..34733 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| JH476_RS25545 (34967) | 34967..35299 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| JH476_RS25550 (35310) | 35310..38009 | + | 2700 | WP_016231887.1 | hypothetical protein | Relaxase |
| JH476_RS25555 (38155) | 38155..39387 | - | 1233 | WP_001045917.1 | MFS transporter | - |
| JH476_RS25560 (39403) | 39403..39780 | - | 378 | WP_001559792.1 | RidA family protein | - |
| JH476_RS25565 (39802) | 39802..40761 | - | 960 | WP_016231888.1 | sugar phosphate isomerase/epimerase family protein | - |
| JH476_RS25570 (40947) | 40947..41609 | + | 663 | WP_000835776.1 | PAS domain-containing protein | - |
| JH476_RS25575 (41710) | 41710..42387 | + | 678 | WP_001682408.1 | IS66 family transposase ISCro1 | Transposase |
| JH476_RS25580 (42387) | 42387..42734 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| JH476_RS25585 (42754) | 42754..44325 | + | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| JH476_RS25590 (44458) | 44458..46749 | - | 2292 | WP_016231889.1 | F-type conjugative transfer protein TrbC | - |
| JH476_RS25595 (46742) | 46742..47812 | - | 1071 | WP_016231890.1 | IncI1-type conjugal transfer protein TrbB | - |
| JH476_RS25600 (47831) | 47831..49039 | - | 1209 | WP_052978849.1 | IncI1-type conjugal transfer protein TrbA | - |
| JH476_RS25605 (49257) | 49257..50210 | - | 954 | WP_016231891.1 | hypothetical protein | - |
| - (50404) | 50404..50459 | - | 56 | NuclAT_1 | - | - |
| - (50404) | 50404..50459 | - | 56 | NuclAT_1 | - | - |
| - (50404) | 50404..50459 | - | 56 | NuclAT_1 | - | - |
| - (50404) | 50404..50459 | - | 56 | NuclAT_1 | - | - |
| - (50700) | 50700..50762 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (50700) | 50700..50762 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (50700) | 50700..50762 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (50700) | 50700..50762 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| JH476_RS25610 (50812) | 50812..50964 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| JH476_RS25615 (51036) | 51036..51287 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| JH476_RS26085 (51649) | 51649..51881 | + | 233 | Protein_62 | hypothetical protein | - |
| JH476_RS25620 (51946) | 51946..52122 | - | 177 | WP_001054901.1 | hypothetical protein | - |
| JH476_RS25625 (52454) | 52454..52663 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| JH476_RS25630 (52735) | 52735..53385 | - | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| JH476_RS25635 (53459) | 53459..55627 | - | 2169 | WP_016231892.1 | DotA/TraY family protein | - |
| JH476_RS25640 (55724) | 55724..56308 | - | 585 | WP_016231893.1 | IncI1-type conjugal transfer protein TraX | - |
| JH476_RS25645 (56337) | 56337..57539 | - | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| JH476_RS25650 (57506) | 57506..58120 | - | 615 | WP_000337398.1 | IncI1-type conjugal transfer protein TraV | - |
| JH476_RS25655 (58120) | 58120..61164 | - | 3045 | WP_115716150.1 | IncI1-type conjugal transfer protein TraU | - |
| JH476_RS25660 (61254) | 61254..62054 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| JH476_RS25665 (62038) | 62038..62226 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| JH476_RS25670 (62290) | 62290..62694 | - | 405 | WP_016231895.1 | IncI1-type conjugal transfer protein TraR | - |
| JH476_RS25675 (62745) | 62745..63272 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| JH476_RS25680 (63272) | 63272..63976 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| JH476_RS25685 (63976) | 63976..65265 | - | 1290 | WP_016231896.1 | conjugal transfer protein TraO | - |
| JH476_RS25690 (65268) | 65268..66251 | - | 984 | WP_001191877.1 | hypothetical protein | VF |
| JH476_RS25695 (66262) | 66262..66954 | - | 693 | WP_000138551.1 | DotI/IcmL family type IV secretion protein | - |
| JH476_RS25700 (66951) | 66951..67298 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| JH476_RS25705 (67316) | 67316..71083 | - | 3768 | WP_016231897.1 | DUF5710 domain-containing protein | - |
| JH476_RS25710 (71173) | 71173..71724 | - | 552 | WP_016231898.1 | Cardiolipin synthase A | VF |
| JH476_RS25715 (71739) | 71739..72029 | - | 291 | WP_001372180.1 | hypothetical protein | - |
| JH476_RS25720 (72026) | 72026..73174 | - | 1149 | WP_001024972.1 | hypothetical protein | VF |
| JH476_RS25725 (73171) | 73171..73989 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| JH476_RS25730 (73986) | 73986..74444 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| JH476_RS25735 (74839) | 74839..75423 | - | 585 | WP_016231299.1 | histidine phosphatase family protein | - |
| JH476_RS25740 (75483) | 75483..76685 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| JH476_RS25745 (76770) | 76770..77594 | - | 825 | WP_016231899.1 | conjugal transfer protein TraE | - |
| JH476_RS25750 (77745) | 77745..78899 | - | 1155 | WP_016231900.1 | site-specific integrase | - |
| JH476_RS26090 (78898) | 78898..79305 | + | 408 | WP_003552681.1 | hypothetical protein | - |
| JH476_RS25765 (79302) | 79302..80594 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| JH476_RS25770 (80594) | 80594..81250 | - | 657 | WP_001193554.1 | hypothetical protein | VF |
| JH476_RS25775 (81235) | 81235..81795 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| JH476_RS25780 (81805) | 81805..82419 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| JH476_RS25785 (82437) | 82437..83534 | - | 1098 | WP_001208805.1 | hypothetical protein | VF |
| JH476_RS25790 (83547) | 83547..85100 | - | 1554 | WP_000362202.1 | hypothetical protein | VF |
| JH476_RS25795 (85111) | 85111..85563 | - | 453 | WP_001247334.1 | hypothetical protein | VF |
| JH476_RS25800 (85550) | 85550..86845 | - | 1296 | WP_000752772.1 | hypothetical protein | VF |
| JH476_RS25805 (86838) | 86838..88520 | - | 1683 | WP_000748143.1 | hypothetical protein | VF |
| JH476_RS25810 (88534) | 88534..88971 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| JH476_RS25815 (88971) | 88971..90038 | - | 1068 | WP_001302629.1 | hypothetical protein | VF |
| JH476_RS25820 (90662) | 90662..90958 | - | 297 | WP_000494780.1 | hypothetical protein | - |
| JH476_RS25825 (91125) | 91125..91379 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| JH476_RS25830 (91541) | 91541..92092 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| JH476_RS25835 (92265) | 92265..92948 | - | 684 | WP_000213861.1 | hypothetical protein | - |
| JH476_RS25840 (93201) | 93201..93734 | - | 534 | WP_001306770.1 | transcription termination/antitermination NusG family protein | - |
| JH476_RS25845 (94176) | 94176..94463 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| JH476_RS25850 (94381) | 94381..94659 | - | 279 | WP_219065241.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|