MGE detailed information
MGE type: Prophage MGE length: 39775 bp
Accession: NZ_CP066809 Location: 2252957..2292731 Organism: Shigella flexneri 3a strain 888048 Replicon: chromosome
Accession: NZ_CP066809 Location: 2252957..2292731 Organism: Shigella flexneri 3a strain 888048 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JGY96_RS11345 (2249224) | 2249224..2249970 | + | 747 | WP_000636575.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| JGY96_RS11350 (2250059) | 2250059..2250770 | + | 712 | Protein_2216 | DNA-binding transcriptional regulator rspR | - |
| JGY96_RS11355 (2250948) | 2250948..2251151 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| JGY96_RS11360 (2251187) | 2251187..2252647 | - | 1461 | WP_025759889.1 | mannitol dehydrogenase family protein | - |
| JGY96_RS11365 (2252763) | 2252763..2253460 | + | 698 | WP_225620296.1 | IS1 family transposase IS1X2 | Transposase |
| JGY96_RS11370 (2253462) | 2253462..2254364 | + | 903 | WP_216650188.1 | alpha/beta hydrolase | - |
| JGY96_RS11375 (2254364) | 2254364..2254723 | + | 360 | Protein_2221 | alpha/beta hydrolase | - |
| JGY96_RS11380 (2254740) | 2254740..2255936 | - | 1197 | WP_161550600.1 | IS110 family transposase ISEc20 | Transposase |
| JGY96_RS11385 (2256165) | 2256165..2256746 | + | 582 | Protein_2223 | alpha/beta hydrolase | - |
| JGY96_RS11390 (2256764) | 2256764..2257402 | + | 639 | Protein_2224 | SDR family oxidoreductase | - |
| JGY96_RS11395 (2257693) | 2257693..2258421 | + | 729 | WP_005068481.1 | murein tripeptide amidase MpaA | - |
| JGY96_RS11400 (2258396) | 2258396..2259355 | - | 960 | WP_005062222.1 | L-Ala-D/L-Glu epimerase | - |
| JGY96_RS11405 (2259474) | 2259474..2259980 | + | 507 | WP_000084385.1 | thiol peroxidase | - |
| JGY96_RS11410 (2260024) | 2260024..2261565 | - | 1542 | WP_001306544.1 | hypothetical protein | VF |
| JGY96_RS11415 (2261713) | 2261713..2262774 | - | 1062 | WP_000138744.1 | YcjF family protein | - |
| JGY96_RS11420 (2262771) | 2262771..2264168 | - | 1398 | WP_000825773.1 | YcjX family protein | - |
| JGY96_RS11425 (2264323) | 2264323..2265321 | + | 999 | WP_000075372.1 | LacI family DNA-binding transcriptional regulator | - |
| JGY96_RS11430 (2265432) | 2265432..2266337 | - | 906 | WP_021577276.1 | monomeric porin OmpG | - |
| JGY96_RS11435 (2266382) | 2266382..2267464 | - | 1083 | WP_000057968.1 | hypothetical protein | VF |
| JGY96_RS11440 (2267478) | 2267478..2268137 | - | 660 | WP_000775779.1 | beta-phosphoglucomutase | - |
| JGY96_RS11445 (2268134) | 2268134..2269636 | - | 1503 | Protein_2235 | kojibiose phosphorylase | - |
| JGY96_RS11450 (2269721) | 2269721..2270134 | + | 414 | WP_254100537.1 | hypothetical protein | - |
| JGY96_RS11455 (2270085) | 2270085..2271271 | + | 1187 | Protein_2237 | IS91 family transposase | - |
| JGY96_RS11460 (2271682) | 2271682..2272236 | - | 555 | WP_000640143.1 | DUF1133 family protein | - |
| JGY96_RS11465 (2272233) | 2272233..2272523 | - | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| JGY96_RS11470 (2272523) | 2272523..2273122 | - | 600 | WP_000940329.1 | DUF1367 family protein | - |
| JGY96_RS11475 (2273256) | 2273256..2273952 | + | 697 | WP_254100540.1 | IS1 family transposase IS1X2 | Transposase |
| JGY96_RS11480 (2274458) | 2274458..2274613 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| JGY96_RS11485 (2275068) | 2275068..2275433 | - | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| JGY96_RS11490 (2275433) | 2275433..2276098 | - | 666 | WP_005115317.1 | hypothetical protein | - |
| JGY96_RS11495 (2276098) | 2276098..2276460 | - | 363 | Protein_2245 | HNH endonuclease | - |
| JGY96_RS11500 (2276462) | 2276462..2276680 | - | 219 | WP_000256997.1 | DUF4014 family protein | - |
| JGY96_RS11505 (2276773) | 2276773..2277129 | - | 357 | WP_000403784.1 | hypothetical protein | - |
| JGY96_RS11510 (2277187) | 2277187..2277609 | - | 423 | WP_001118171.1 | DUF977 family protein | - |
| JGY96_RS11515 (2277624) | 2277624..2278370 | - | 747 | WP_000788996.1 | ATP-binding protein | - |
| JGY96_RS11520 (2278516) | 2278516..2278685 | - | 170 | Protein_2250 | hypothetical protein | - |
| JGY96_RS11525 (2279209) | 2279209..2280435 | + | 1227 | Protein_2251 | IS3 family transposase IS2 | Transposase |
| JGY96_RS11530 (2280449) | 2280449..2280858 | - | 410 | Protein_2252 | YdaU family protein | - |
| JGY96_RS11535 (2280962) | 2280962..2282119 | + | 1158 | Protein_2253 | IS3 family transposase IS600 | Transposase |
| JGY96_RS11540 (2282143) | 2282143..2282322 | - | 180 | WP_000372593.1 | class II holin family protein | - |
| JGY96_RS11545 (2282472) | 2282472..2282633 | - | 162 | WP_001323614.1 | hypothetical protein | - |
| JGY96_RS11550 (2282633) | 2282633..2282818 | - | 186 | Protein_2256 | DUF1737 domain-containing protein | - |
| JGY96_RS11555 (2283078) | 2283078..2283413 | + | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| JGY96_RS11560 (2283694) | 2283694..2283780 | - | 87 | WP_000115835.1 | DUF3927 family protein | - |
| JGY96_RS11575 (2284722) | 2284722..2285543 | - | 822 | WP_000762884.1 | antitermination protein | - |
| JGY96_RS11580 (2285558) | 2285558..2285914 | - | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| JGY96_RS11585 (2285927) | 2285927..2286976 | - | 1050 | WP_025759563.1 | DUF968 domain-containing protein | - |
| JGY96_RS11590 (2286978) | 2286978..2287256 | - | 279 | WP_024258459.1 | hypothetical protein | - |
| JGY96_RS11595 (2287323) | 2287323..2287573 | - | 251 | Protein_2263 | hypothetical protein | - |
| JGY96_RS11600 (2287791) | 2287791..2287946 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| JGY96_RS11605 (2288018) | 2288018..2288305 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| JGY96_RS11610 (2288305) | 2288305..2288544 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| JGY96_RS11615 (2288569) | 2288569..2288874 | + | 306 | WP_071818640.1 | hypothetical protein | - |
| JGY96_RS11620 (2288871) | 2288871..2290027 | - | 1157 | Protein_2268 | IS3 family transposase | - |
| JGY96_RS11625 (2290091) | 2290091..2290449 | + | 359 | Protein_2269 | type 1 fimbrial protein | - |
| JGY96_RS11630 (2290462) | 2290462..2290827 | + | 366 | Protein_2270 | hypothetical protein | VF |
| JGY96_RS11635 (2290902) | 2290902..2291111 | - | 210 | Protein_2271 | IS1 family transposase IS1X2 | Transposase |
| JGY96_RS11640 (2291176) | 2291176..2292332 | - | 1157 | Protein_2272 | IS3 family transposase | - |
| JGY96_RS11645 (2292435) | 2292435..2292925 | - | 491 | Protein_2273 | IS1 family transposase IS1X1 | Transposase |
| JGY96_RS11650 (2292981) | 2292981..2293730 | + | 750 | Protein_2274 | fimbrial protein | - |
| JGY96_RS11655 (2294064) | 2294064..2296343 | + | 2280 | WP_000726665.1 | acid resistance putative oxidoreductase YdeP | - |
| JGY96_RS11660 (2296591) | 2296591..2296788 | + | 198 | WP_000543382.1 | two-component system connector SafA | - |
| JGY96_RS11665 (2296862) | 2296862..2297623 | + | 762 | WP_000060475.1 | acid stress response transcriptional regulator YdeO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|