MGE detailed information
MGE type: Genomic_island MGE length: 30014 bp
Accession: NZ_CP066343 Location: 3009508..3039521 Organism: Xanthomonas citri pv. durantae strain LMG696 Replicon: chromosome
Accession: NZ_CP066343 Location: 3009508..3039521 Organism: Xanthomonas citri pv. durantae strain LMG696 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Xdur_RS13345 (Xdur_013315) | 3005788..3008406 | - | 2619 | WP_015472106.1 | DNA ligase D | - |
| Xdur_RS13350 (Xdur_013320) | 3008422..3008598 | - | 177 | WP_011051567.1 | DUF3606 domain-containing protein | - |
| Xdur_RS13355 (Xdur_013325) | 3008818..3009219 | + | 402 | WP_003485983.1 | H-NS family nucleoid-associated regulatory protein | - |
| Xdur_RS13365 (Xdur_013335) | 3009508..3010599 | + | 1092 | WP_040152493.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| Xdur_RS13370 (Xdur_013340) | 3011531..3013663 | + | 2133 | WP_234336958.1 | DotA/TraY family protein | - |
| Xdur_RS13375 (Xdur_013345) | 3013673..3014194 | + | 522 | WP_011051570.1 | hypothetical protein | - |
| Xdur_RS13380 (Xdur_013350) | 3015059..3016015 | - | 957 | WP_011051571.1 | hypothetical protein | - |
| Xdur_RS13385 (Xdur_013355) | 3016082..3017215 | - | 1134 | Protein_2616 | IS5 family transposase ISXo4 | Transposase |
| Xdur_RS13395 (Xdur_013365) | 3018555..3018809 | - | 255 | WP_223293127.1 | hypothetical protein | - |
| Xdur_RS13400 | 3018878..3019012 | - | 135 | WP_011051575.1 | hypothetical protein | - |
| Xdur_RS13405 (Xdur_013370) | 3019005..3019319 | - | 315 | WP_015463310.1 | hypothetical protein | - |
| Xdur_RS13410 (Xdur_013375) | 3019322..3019573 | - | 252 | WP_230598886.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| Xdur_RS13415 (Xdur_013380) | 3019600..3019878 | - | 279 | WP_004541313.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| Xdur_RS13420 (Xdur_013385) | 3020048..3021316 | - | 1269 | Protein_2623 | Tn3 family transposase ISPsy42 | Transposase |
| Xdur_RS13425 (Xdur_013390) | 3021365..3022590 | + | 1226 | Protein_2624 | IS3 family transposase ISJsp1 | Transposase |
| Xdur_RS13430 (Xdur_013395) | 3023227..3023934 | + | 708 | Protein_2625 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| Xdur_RS13435 (Xdur_013400) | 3024355..3026463 | + | 2109 | WP_015472116.1 | AAA family ATPase | - |
| Xdur_RS13440 (Xdur_013405) | 3026535..3026702 | + | 168 | WP_227893452.1 | plasmid-related protein | - |
| Xdur_RS13445 (Xdur_013410) | 3026699..3028285 | + | 1587 | WP_011051583.1 | N-6 DNA methylase | - |
| Xdur_RS13450 (Xdur_013415) | 3028282..3029199 | + | 918 | WP_011051584.1 | XamI family restriction endonuclease | - |
| Xdur_RS13455 (Xdur_013420) | 3029208..3029537 | + | 330 | WP_015463316.1 | hypothetical protein | - |
| Xdur_RS13460 (Xdur_013425) | 3029644..3030055 | + | 412 | Protein_2631 | plasmid pRiA4b ORF-3 family protein | - |
| Xdur_RS13465 (Xdur_013435) | 3030454..3030675 | + | 222 | Protein_2632 | IS4 family transposase ISXac1 | Transposase |
| Xdur_RS13475 (Xdur_013450) | 3032376..3033590 | - | 1215 | WP_040259055.1 | IS4 family transposase ISXac1 | Transposase |
| Xdur_RS13480 (Xdur_013455) | 3033704..3034372 | - | 669 | WP_040277100.1 | replication protein RepA | - |
| Xdur_RS13485 (Xdur_013460) | 3034605..3034838 | + | 234 | WP_040107635.1 | hypothetical protein | - |
| Xdur_RS13490 (Xdur_013465) | 3035417..3036811 | + | 1395 | WP_011051590.1 | SIR2 family protein | - |
| Xdur_RS13495 (Xdur_013470) | 3036808..3037320 | + | 513 | WP_234351596.1 | hypothetical protein | - |
| Xdur_RS13500 (Xdur_013475) | 3037227..3037658 | - | 432 | WP_234351587.1 | DUF87 domain-containing protein | - |
| Xdur_RS13505 (Xdur_013480) | 3037708..3038925 | + | 1218 | WP_234351588.1 | ATP-binding protein | - |
| Xdur_RS13510 (Xdur_013485) | 3039345..3039521 | + | 177 | WP_003485979.1 | hypothetical protein | - |
| Xdur_RS13515 (Xdur_013490) | 3039804..3040910 | + | 1107 | WP_016849926.1 | diguanylate cyclase | - |
| Xdur_RS13520 (Xdur_013495) | 3040953..3041462 | - | 510 | WP_011051594.1 | chemotaxis protein CheW | - |
| Xdur_RS13525 (Xdur_013500) | 3041474..3043132 | - | 1659 | WP_011051595.1 | methyl-accepting chemotaxis protein | - |
| Xdur_RS13530 (Xdur_013505) | 3043428..3044048 | + | 621 | WP_011051596.1 | DNA-3-methyladenine glycosylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xanthomonas axonopodis pv. citri str. 306 | Genomic island | TA20720 | NC_003919 | 2820490..2847010 | 0.006 |