MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 74202 bp
Accession: NZ_CP065431 Location: 1887698..1961899 Organism: Streptococcus suis strain YP20190405 Replicon: chromosome
Accession: NZ_CP065431 Location: 1887698..1961899 Organism: Streptococcus suis strain YP20190405 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I5W22_RS09240 () | 1882732..1883607 | - | 876 | WP_012027877.1 | ribosome small subunit-dependent GTPase A | - |
| I5W22_RS09250 () | 1884504..1886081 | - | 1578 | WP_012027878.1 | ABC transporter ATP-binding protein/permease | - |
| I5W22_RS09255 () | 1886078..1887325 | - | 1248 | WP_012027879.1 | radical SAM protein | - |
| I5W22_RS09260 () | 1887688..1888551 | - | 864 | WP_012027880.1 | Rgg/GadR/MutR family transcriptional regulator | - |
| I5W22_RS09265 () | 1889041..1891485 | - | 2445 | WP_012027881.1 | alkaline phosphatase family protein | - |
| I5W22_RS09270 () | 1891498..1893228 | - | 1731 | WP_012775361.1 | membrane protein | - |
| I5W22_RS09275 () | 1893593..1894501 | - | 909 | WP_012027884.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
| I5W22_RS09280 () | 1894485..1895015 | - | 531 | WP_009910909.1 | DUF1697 domain-containing protein | - |
| I5W22_RS09285 () | 1895029..1895286 | - | 258 | WP_012775363.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| I5W22_RS09290 () | 1895288..1895548 | - | 261 | WP_002939010.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| I5W22_RS09295 () | 1895624..1895965 | - | 342 | Protein_1792 | 8-oxo-dGTP diphosphatase | - |
| I5W22_RS09300 () | 1896075..1897511 | - | 1437 | WP_044680665.1 | hypothetical protein ; Integrase | Integrase |
| I5W22_RS09305 () | 1897504..1899120 | - | 1617 | WP_044680666.1 | hypothetical protein ; Integrase | Integrase |
| I5W22_RS09310 () | 1899120..1900694 | - | 1575 | WP_044680668.1 | IS607 family transposase ISCbt3 | Transposase |
| I5W22_RS09315 () | 1900793..1900933 | - | 141 | WP_044680669.1 | hypothetical protein | - |
| I5W22_RS09320 () | 1901209..1901424 | - | 216 | WP_044680671.1 | helix-turn-helix domain-containing protein | - |
| I5W22_RS09325 () | 1901503..1902099 | - | 597 | WP_024394052.1 | response regulator transcription factor | - |
| I5W22_RS09330 () | 1902080..1903654 | - | 1575 | WP_024394053.1 | ATP-binding protein | - |
| I5W22_RS09335 () | 1903741..1905762 | - | 2022 | WP_104929696.1 | ABC transporter permease | - |
| I5W22_RS09340 () | 1905774..1906508 | - | 735 | WP_024394055.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| I5W22_RS09345 () | 1906772..1906948 | - | 177 | WP_024394056.1 | hypothetical protein | - |
| I5W22_RS09350 () | 1907042..1907224 | - | 183 | WP_024394057.1 | hypothetical protein | - |
| I5W22_RS09355 () | 1907305..1907490 | - | 186 | WP_024395819.1 | hypothetical protein | - |
| I5W22_RS09360 () | 1909148..1911265 | - | 2118 | WP_024394060.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| I5W22_RS09365 () | 1911607..1912835 | + | 1229 | Protein_1806 | IS110 family transposase ISSpn10 | Transposase |
| I5W22_RS09370 () | 1912959..1915902 | - | 2944 | Protein_1807 | type 2 lantipeptide synthetase LanM | - |
| I5W22_RS09375 () | 1916034..1917899 | - | 1866 | WP_197308482.1 | relaxase/mobilization nuclease domain-containing protein | - |
| I5W22_RS09380 () | 1917886..1918251 | - | 366 | WP_044680677.1 | MobC family plasmid mobilization relaxosome protein | - |
| I5W22_RS09385 () | 1918261..1918620 | - | 360 | WP_044680678.1 | hypothetical protein | - |
| I5W22_RS09390 () | 1919035..1919247 | - | 213 | WP_162890955.1 | hypothetical protein | - |
| I5W22_RS09395 () | 1919259..1919438 | - | 180 | WP_012775540.1 | Blp family class II bacteriocin | - |
| I5W22_RS09400 () | 1919636..1919839 | - | 204 | Protein_1813 | hypothetical protein | - |
| I5W22_RS09405 () | 1920254..1920946 | + | 693 | WP_197308483.1 | XRE family transcriptional regulator | - |
| I5W22_RS09410 () | 1921089..1922504 | + | 1416 | WP_197308484.1 | Y-family DNA polymerase | - |
| I5W22_RS09415 () | 1922501..1922851 | + | 351 | WP_012775537.1 | hypothetical protein | - |
| I5W22_RS09420 () | 1922838..1923146 | + | 309 | WP_197308485.1 | hypothetical protein | - |
| I5W22_RS09425 () | 1923155..1923451 | - | 297 | WP_044758818.1 | hypothetical protein | - |
| I5W22_RS09430 () | 1923501..1923890 | - | 390 | WP_002943340.1 | hypothetical protein | - |
| I5W22_RS09435 () | 1923887..1924114 | - | 228 | WP_002943342.1 | hypothetical protein | - |
| I5W22_RS09440 () | 1924168..1925244 | - | 1077 | WP_044758819.1 | toprim domain-containing protein | - |
| I5W22_RS09445 () | 1925284..1925922 | - | 639 | WP_050887020.1 | hypothetical protein | - |
| I5W22_RS09450 () | 1926018..1926308 | - | 291 | WP_105152240.1 | hypothetical protein | - |
| I5W22_RS09455 () | 1926322..1926621 | - | 300 | WP_002943350.1 | hypothetical protein | - |
| I5W22_RS09460 () | 1926692..1927651 | - | 960 | Protein_1825 | hypothetical protein | - |
| I5W22_RS09465 () | 1927644..1927965 | - | 322 | Protein_1826 | DUF4368 domain-containing protein | - |
| I5W22_RS09470 () | 1928063..1928332 | - | 270 | WP_002943355.1 | zeta toxin family protein | Toxin Detail |
| I5W22_RS09475 () | 1928334..1928606 | - | 273 | WP_002326825.1 | antitoxin | Antitoxin Detail |
| I5W22_RS09480 () | 1928624..1928833 | - | 210 | WP_000527318.1 | peptide-binding protein | - |
| I5W22_RS09485 () | 1928917..1929813 | - | 897 | WP_002326827.1 | ParA family protein | - |
| I5W22_RS09490 () | 1929916..1930176 | - | 261 | Protein_1831 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
| I5W22_RS09495 () | 1930346..1931083 | - | 738 | WP_001038795.1 | Ribosomal RNA small subunit methyltransferase A | ARG |
| I5W22_RS09500 () | 1931208..1931291 | - | 84 | WP_001814874.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| I5W22_RS09505 () | 1931340..1931579 | - | 240 | WP_000635249.1 | peptide-binding protein | - |
| I5W22_RS09510 () | 1931671..1932771 | - | 1101 | Protein_1835 | IS607 family transposase ISTsi1 | Transposase |
| I5W22_RS09515 () | 1932825..1933016 | - | 192 | WP_000503424.1 | hypothetical protein | - |
| I5W22_RS09520 () | 1933087..1933317 | - | 231 | WP_000659121.1 | hypothetical protein | - |
| I5W22_RS09525 () | 1933489..1934778 | + | 1290 | WP_197308486.1 | IS4 family transposase ISSsu2 | Transposase |
| I5W22_RS09530 () | 1935003..1935176 | - | 174 | WP_002779755.1 | cysteine-rich KTR domain-containing protein | - |
| I5W22_RS09535 () | 1935228..1937147 | - | 1920 | WP_014636291.1 | Peptide chain release factor 3 | VF |
| I5W22_RS09540 () | 1937513..1937887 | - | 375 | WP_024397218.1 | TnpV protein | - |
| I5W22_RS09545 () | 1937868..1943816 | - | 5949 | WP_197308487.1 | N-6 DNA methylase | - |
| I5W22_RS09550 () | 1943866..1944417 | - | 552 | WP_105152238.1 | hypothetical protein | - |
| I5W22_RS09555 () | 1944401..1944592 | - | 192 | WP_001068448.1 | calcium-binding protein | - |
| I5W22_RS09560 () | 1944593..1949489 | - | 4897 | Protein_1845 | hypothetical protein | VF |
| I5W22_RS09565 () | 1949661..1950251 | + | 591 | WP_105208272.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | Antitoxin Detail |
| I5W22_RS09570 () | 1950248..1951093 | + | 846 | WP_105208271.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| I5W22_RS09575 () | 1951180..1953957 | - | 2778 | WP_197308488.1 | CHAP domain-containing protein | - |
| I5W22_RS09580 () | 1953959..1956310 | - | 2352 | WP_197308489.1 | AAA family ATPase | - |
| I5W22_RS09585 () | 1956267..1956620 | - | 354 | WP_104929937.1 | PrgI family protein | - |
| I5W22_RS09590 () | 1956811..1957665 | - | 855 | WP_197308490.1 | conjugal transfer protein TrbL | - |
| I5W22_RS09595 () | 1957684..1957926 | - | 243 | WP_001072182.1 | hypothetical protein | - |
| I5W22_RS09600 () | 1957944..1959761 | - | 1818 | WP_197308491.1 | type IV secretory system conjugative DNA transfer family protein | - |
| I5W22_RS09605 () | 1959761..1960249 | - | 489 | WP_024392286.1 | hypothetical protein | - |
| I5W22_RS09610 () | 1960327..1960911 | - | 585 | WP_197308492.1 | CPBP family intramembrane metalloprotease | - |
| I5W22_RS09615 () | 1960914..1961147 | - | 234 | WP_001005709.1 | hypothetical protein | - |
| I5W22_RS09620 () | 1961156..1961539 | - | 384 | WP_197308493.1 | hypothetical protein | - |
| I5W22_RS09625 () | 1961550..1961978 | - | 429 | WP_197308494.1 | hypothetical protein | - |
| I5W22_RS09630 () | 1961962..1963317 | - | 1356 | WP_197308495.1 | DNA (cytosine-5-)-methyltransferase | - |
| I5W22_RS09635 () | 1963467..1964270 | - | 804 | WP_197308496.1 | replication initiator protein A | - |
| I5W22_RS09640 () | 1964267..1964440 | - | 174 | WP_197308497.1 | hypothetical protein | - |
| I5W22_RS09645 () | 1964730..1965059 | - | 330 | WP_012775364.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| I5W22_RS09650 () | 1965049..1965336 | - | 288 | WP_012028535.1 | hypothetical protein | - |
| I5W22_RS09655 () | 1965434..1965802 | - | 369 | WP_012775453.1 | hypothetical protein | - |
| I5W22_RS09660 () | 1965795..1966364 | - | 570 | WP_012775366.1 | ribonuclease M5 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|