MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 50708 bp
Accession: NZ_CP064944 Location: 1..50708 Organism: Pseudomonas fulva strain ZDHY316 Replicon: plasmid pVIM-1-ZDHY316
Accession: NZ_CP064944 Location: 1..50708 Organism: Pseudomonas fulva strain ZDHY316 Replicon: plasmid pVIM-1-ZDHY316
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IYR97_RS22885 () | 1..1248 | + | 1248 | WP_196113754.1 | replication initiation protein | - |
| IYR97_RS22890 () | 1527..1850 | + | 324 | WP_182275391.1 | hypothetical protein | - |
| IYR97_RS22895 () | 1847..2653 | + | 807 | WP_196113755.1 | ParA family protein | - |
| IYR97_RS22900 () | 2646..3710 | + | 1065 | WP_196113756.1 | ParB/RepB/Spo0J family partition protein | - |
| IYR97_RS22905 () | 3697..3960 | + | 264 | WP_196113757.1 | hypothetical protein | - |
| IYR97_RS22910 () | 4243..4533 | - | 291 | WP_196113758.1 | putative addiction module antidote protein | Antitoxin Detail |
| IYR97_RS22915 () | 4530..4829 | - | 300 | WP_150345860.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| IYR97_RS22920 () | 4968..5270 | + | 303 | WP_196113759.1 | hypothetical protein | - |
| IYR97_RS22925 () | 5285..5770 | - | 486 | WP_196113760.1 | hypothetical protein | - |
| IYR97_RS22930 () | 5857..6570 | - | 714 | WP_196113761.1 | SprT-like domain-containing protein | - |
| IYR97_RS22935 () | 7040..7597 | + | 558 | WP_196113762.1 | hypothetical protein | Relaxase |
| IYR97_RS22940 () | 7584..8615 | + | 1032 | WP_196113763.1 | T-DNA border endonuclease VirD2 | Relaxase |
| IYR97_RS22945 () | 8692..8943 | + | 252 | WP_196113764.1 | hypothetical protein | - |
| IYR97_RS22950 () | 8930..9268 | + | 339 | WP_196113765.1 | hypothetical protein | - |
| IYR97_RS22955 () | 9258..9608 | + | 351 | WP_196113766.1 | hypothetical protein | - |
| IYR97_RS22960 () | 9621..9851 | + | 231 | WP_196113767.1 | hypothetical protein | - |
| IYR97_RS22965 () | 10060..10695 | + | 636 | WP_196113768.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| IYR97_RS22970 () | 10776..10958 | + | 183 | WP_196113769.1 | hypothetical protein | - |
| IYR97_RS22975 () | 10948..11127 | + | 180 | WP_196113770.1 | hypothetical protein | - |
| IYR97_RS22980 () | 11158..11379 | + | 222 | WP_196113771.1 | DUF3717 domain-containing protein | - |
| IYR97_RS22985 () | 11503..12051 | + | 549 | WP_196113772.1 | hypothetical protein | - |
| IYR97_RS22990 () | 12098..12730 | - | 633 | WP_196113773.1 | transglycosylase SLT domain-containing protein | - |
| IYR97_RS22995 () | 12727..14892 | - | 2166 | WP_196113774.1 | hypothetical protein | VF |
| IYR97_RS23000 () | 14912..16822 | - | 1911 | WP_196113775.1 | Protein VirD4 | VF |
| IYR97_RS23005 () | 16832..17878 | - | 1047 | WP_196113776.1 | Type IV secretion system protein VirB11 | VF |
| IYR97_RS23010 () | 17875..19086 | - | 1212 | WP_196113777.1 | Type IV secretion system protein virB10 | VF |
| IYR97_RS23015 () | 19083..19892 | - | 810 | WP_196113778.1 | Type IV secretion system protein virB9 | VF |
| IYR97_RS23020 () | 19895..20788 | - | 894 | WP_196113779.1 | type IV secretion system protein | - |
| IYR97_RS23025 () | 21106..22056 | - | 951 | WP_196113780.1 | type IV secretion system protein | - |
| IYR97_RS23030 () | 22267..22998 | - | 732 | WP_196113781.1 | type IV secretion system protein | - |
| IYR97_RS23035 () | 22995..25430 | - | 2436 | WP_196113782.1 | Type IV secretion system protein virB4 | VF |
| IYR97_RS23040 () | 25427..25795 | - | 369 | WP_196113750.1 | Type IV secretion system protein virB3 | VF |
| IYR97_RS23045 () | 25823..26089 | - | 267 | WP_182275419.1 | TrbC/VirB2 family protein | - |
| IYR97_RS23050 () | 26124..26393 | - | 270 | WP_162465317.1 | hypothetical protein | - |
| IYR97_RS23055 () | 26512..27042 | - | 531 | WP_196113751.1 | hypothetical protein | - |
| IYR97_RS23060 () | 27160..28089 | - | 930 | WP_196113752.1 | DUF3991 and TOPRIM domain-containing protein | - |
| IYR97_RS23065 () | 28318..28920 | + | 603 | WP_196113753.1 | hypothetical protein | - |
| IYR97_RS23070 () | 29016..29280 | - | 265 | Protein_37 | Tn3 family transposase | - |
| IYR97_RS23075 () | 29295..30599 | - | 1305 | WP_134630524.1 | Biofilm dispersion protein BdlA | VF |
| IYR97_RS23080 () | 30783..31745 | + | 963 | WP_004577240.1 | IS30 family transposase ISPpu17 | Transposase |
| IYR97_RS23085 () | 31981..33660 | + | 1680 | WP_003465068.1 | DDE-type integrase/transposase/recombinase | - |
| IYR97_RS23090 () | 33663..34571 | + | 909 | WP_003465065.1 | TniB family NTP-binding protein | - |
| IYR97_RS23095 () | 34568..35785 | + | 1218 | WP_054471483.1 | TniQ family protein | - |
| IYR97_RS23100 () | 35847..36470 | + | 624 | WP_003155741.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| IYR97_RS23105 () | 36633..37187 | - | 555 | WP_014454105.1 | aminoglycoside N-acetyltransferase AAC(6')-Ib' | - |
| IYR97_RS23110 () | 37295..38095 | - | 801 | WP_013263789.1 | Metallo-beta-lactamase type 2 | ARG |
| IYR97_RS23115 () | 38262..39275 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| IYR97_RS23120 () | 39575..40504 | + | 930 | WP_003150544.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| IYR97_RS23125 () | 41459..41977 | + | 519 | WP_003464991.1 | DUF417 family protein | - |
| IYR97_RS23130 () | 42007..42852 | - | 846 | WP_003464995.1 | AraC family transcriptional regulator | - |
| IYR97_RS23135 () | 43089..46118 | - | 3030 | Protein_50 | Tn3 family transposase ISPsy42 | Transposase |
| IYR97_RS23140 () | 46102..46704 | - | 603 | WP_010465829.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| IYR97_RS23145 () | 46896..47252 | + | 357 | WP_000182276.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| IYR97_RS23150 () | 47254..47589 | + | 336 | WP_001172026.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| IYR97_RS23155 () | 47604..47939 | + | 336 | WP_000741275.1 | hypothetical protein | - |
| IYR97_RS23160 () | 47963..48289 | + | 327 | WP_000091614.1 | hypothetical protein | - |
| IYR97_RS23165 () | 48286..48666 | + | 381 | WP_001054412.1 | hypothetical protein | - |
| IYR97_RS23170 () | 48784..50066 | + | 1283 | Protein_57 | HD-GYP domain-containing protein | - |
| IYR97_RS23175 () | 50323..50541 | + | 219 | WP_182275393.1 | ribbon-helix-helix domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|