MGE detailed information
MGE type: Conjugative plasmid MGE length: 93933 bp
Accession: NZ_CP064386 Location: 1..93933 Organism: Salmonella enterica subsp. enterica strain PartC-Senterica-RM8376 Replicon: plasmid unnamed
Accession: NZ_CP064386 Location: 1..93933 Organism: Salmonella enterica subsp. enterica strain PartC-Senterica-RM8376 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUJ38_RS23550 (IUJ38_23455) | 1036..2061 | + | 1026 | WP_001576625.1 | ExeA family protein | - |
| IUJ38_RS23555 (IUJ38_23460) | 2250..3287 | - | 1038 | WP_001121399.1 | IS630 family transposase ISEc33 | Transposase |
| IUJ38_RS23560 (IUJ38_23465) | 3896..4789 | + | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| IUJ38_RS23565 (IUJ38_23470) | 4963..5127 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| IUJ38_RS23570 (IUJ38_23475) | 5301..6068 | + | 768 | WP_001526990.1 | virulence protein SpvA | - |
| IUJ38_RS23575 (IUJ38_23480) | 6031..6198 | + | 168 | WP_001526987.1 | hypothetical protein | - |
| IUJ38_RS23580 (IUJ38_23485) | 6250..8025 | + | 1776 | WP_001676648.1 | Beta-lactamase Toho-1 | VF |
| IUJ38_RS23585 (IUJ38_23490) | 8307..9032 | + | 726 | WP_001122242.1 | hypothetical protein | VF |
| IUJ38_RS23590 (IUJ38_23495) | 9293..9943 | + | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| IUJ38_RS23595 (IUJ38_23500) | 10070..10494 | - | 425 | Protein_10 | IS200-IS605 family transposase ISEc46 | Transposase |
| IUJ38_RS23600 (IUJ38_23505) | 10551..10901 | + | 351 | WP_001541541.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| IUJ38_RS23605 (IUJ38_23510) | 10968..11528 | - | 561 | WP_000900095.1 | hypothetical protein | VF |
| IUJ38_RS23610 (IUJ38_23515) | 11684..11971 | + | 288 | WP_071530243.1 | hypothetical protein | - |
| IUJ38_RS23615 (IUJ38_23520) | 12248..12733 | - | 486 | WP_000905606.1 | membrane protein | - |
| IUJ38_RS23620 (IUJ38_23525) | 12727..13215 | - | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| IUJ38_RS23625 (IUJ38_23530) | 13402..13953 | - | 552 | WP_000545754.1 | hypothetical protein | VF |
| IUJ38_RS23630 (IUJ38_23535) | 13962..14744 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| IUJ38_RS23635 (IUJ38_23540) | 14779..15300 | - | 522 | WP_000198608.1 | hypothetical protein | - |
| IUJ38_RS23640 (IUJ38_23545) | 15297..15587 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| IUJ38_RS23645 (IUJ38_23550) | 15589..15894 | - | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| IUJ38_RS23650 (IUJ38_23555) | 15896..16114 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| IUJ38_RS23655 (IUJ38_23560) | 16790..17311 | + | 522 | WP_010999942.1 | hypothetical protein | - |
| IUJ38_RS23660 | 17355..17783 | - | 429 | Protein_23 | hypothetical protein | - |
| IUJ38_RS23665 (IUJ38_23565) | 17795..18091 | + | 297 | WP_001687482.1 | hypothetical protein | - |
| IUJ38_RS23670 (IUJ38_23570) | 18585..19574 | + | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| IUJ38_RS23675 (IUJ38_23575) | 19833..20277 | - | 445 | Protein_26 | tyrosine-type recombinase/integrase | - |
| IUJ38_RS23680 (IUJ38_23580) | 20446..20827 | - | 382 | Protein_27 | YgiW/YdeI family stress tolerance OB fold protein | - |
| IUJ38_RS23685 (IUJ38_23585) | 21546..21848 | + | 303 | WP_000979451.1 | HTH-type transcriptional activator mta | VF |
| IUJ38_RS23690 (IUJ38_23590) | 22123..22641 | + | 519 | WP_000748205.1 | hypothetical protein | VF |
| IUJ38_RS23695 (IUJ38_23595) | 22869..25277 | + | 2409 | WP_000007893.1 | hypothetical protein | VF |
| IUJ38_RS23700 (IUJ38_23600) | 25270..25962 | + | 693 | WP_001038510.1 | hypothetical protein | VF |
| IUJ38_RS23705 (IUJ38_23605) | 25977..26534 | + | 558 | WP_010999940.1 | membrane protein | - |
| IUJ38_RS23710 (IUJ38_23610) | 26787..27662 | + | 876 | WP_010999939.1 | membrane protein | - |
| IUJ38_RS23715 (IUJ38_23615) | 28094..28306 | + | 213 | WP_000004313.1 | hypothetical protein | VF |
| IUJ38_RS23720 (IUJ38_23620) | 28291..28641 | + | 351 | WP_001526811.1 | Transcriptional regulatory protein RcsB | VF |
| IUJ38_RS23725 (IUJ38_23625) | 28886..29539 | + | 654 | WP_000178592.1 | DsbA family protein | - |
| IUJ38_RS23730 (IUJ38_23630) | 29529..29675 | + | 147 | WP_001192557.1 | hypothetical protein | - |
| IUJ38_RS23735 (IUJ38_23635) | 29672..30571 | + | 900 | WP_010999938.1 | YjiK family protein | - |
| IUJ38_RS23740 (IUJ38_23640) | 30661..31218 | + | 558 | WP_000725062.1 | hypothetical protein | VF |
| IUJ38_RS23745 (IUJ38_23645) | 31485..32243 | + | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| IUJ38_RS23750 (IUJ38_23650) | 32340..32534 | - | 195 | Protein_41 | SdiA-regulated domain-containing protein | - |
| IUJ38_RS23755 (IUJ38_23655) | 33421..34302 | - | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| IUJ38_RS23760 (IUJ38_23660) | 34283..34360 | - | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| IUJ38_RS23765 (IUJ38_23665) | 34610..34876 | - | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| IUJ38_RS23770 (IUJ38_23670) | 34987..35542 | - | 556 | Protein_45 | hypothetical protein | VF |
| IUJ38_RS23775 (IUJ38_23675) | 35664..35819 | - | 156 | WP_000983042.1 | hypothetical protein | - |
| IUJ38_RS23780 (IUJ38_23680) | 35832..36116 | - | 285 | WP_000477658.1 | hypothetical protein | - |
| IUJ38_RS23785 (IUJ38_23685) | 36231..36794 | - | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| IUJ38_RS23790 (IUJ38_23690) | 36849..37589 | - | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| IUJ38_RS23795 (IUJ38_23695) | 37609..42867 | - | 5259 | WP_000986921.1 | Plasmid partition protein A | Relaxase |
| IUJ38_RS23800 (IUJ38_23700) | 42949..43176 | + | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| IUJ38_RS23805 (IUJ38_23705) | 43176..43574 | + | 399 | WP_000911322.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| IUJ38_RS23810 (IUJ38_23710) | 43583..45826 | - | 2244 | WP_000009320.1 | type IV conjugative transfer system coupling protein TraD | - |
| IUJ38_RS23815 (IUJ38_23715) | 46203..46934 | - | 732 | WP_000782438.1 | conjugal transfer complement resistance protein TraT | - |
| IUJ38_RS23820 (IUJ38_23720) | 46970..47464 | - | 495 | WP_010999946.1 | entry exclusion protein | - |
| IUJ38_RS23825 (IUJ38_23725) | 47480..50302 | - | 2823 | WP_001007086.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| IUJ38_RS23830 (IUJ38_23730) | 50299..51681 | - | 1383 | WP_001161719.1 | conjugal transfer pilus assembly protein TraH | - |
| IUJ38_RS23835 (IUJ38_23735) | 51671..52219 | - | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| IUJ38_RS23840 (IUJ38_23740) | 52206..52499 | - | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| IUJ38_RS23845 (IUJ38_23745) | 52713..53462 | - | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| IUJ38_RS23850 (IUJ38_23750) | 53474..53689 | - | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| IUJ38_RS23855 (IUJ38_23755) | 53700..55526 | - | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| IUJ38_RS23860 (IUJ38_23760) | 55523..55942 | - | 420 | WP_001229397.1 | HNH endonuclease signature motif containing protein | - |
| IUJ38_RS23865 (IUJ38_23765) | 55979..56617 | - | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| IUJ38_RS23870 (IUJ38_23770) | 56602..56910 | - | 309 | WP_010999945.1 | hypothetical protein | - |
| IUJ38_RS23875 (IUJ38_23775) | 56929..57921 | - | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| IUJ38_RS23880 (IUJ38_23780) | 57918..58550 | - | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| IUJ38_RS23885 (IUJ38_23785) | 58547..58933 | - | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| IUJ38_RS23890 (IUJ38_23790) | 58908..61556 | - | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| IUJ38_RS23895 (IUJ38_23795) | 61572..61835 | - | 264 | WP_001239256.1 | hypothetical protein | - |
| IUJ38_RS23900 (IUJ38_23800) | 61952..62419 | - | 468 | WP_000549562.1 | hypothetical protein | - |
| IUJ38_RS23905 (IUJ38_23805) | 62412..62633 | - | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| IUJ38_RS23910 (IUJ38_23810) | 62768..63283 | - | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| IUJ38_RS23915 (IUJ38_23815) | 63280..63525 | - | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| IUJ38_RS23920 (IUJ38_23820) | 63503..64099 | - | 597 | WP_000527896.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| IUJ38_RS23925 (IUJ38_23825) | 64089..65510 | - | 1422 | WP_000146700.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| IUJ38_RS23930 (IUJ38_23830) | 65510..66250 | - | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| IUJ38_RS23935 (IUJ38_23835) | 66237..66803 | - | 567 | WP_000399769.1 | type IV conjugative transfer system protein TraE | - |
| IUJ38_RS23940 (IUJ38_23840) | 66825..67136 | - | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| IUJ38_RS23945 (IUJ38_23845) | 67151..67513 | - | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| IUJ38_RS23950 (IUJ38_23850) | 67555..67782 | - | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| IUJ38_RS23955 (IUJ38_23855) | 67876..68562 | - | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| IUJ38_RS23960 (IUJ38_23860) | 68755..69135 | - | 381 | WP_001151546.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| IUJ38_RS23965 (IUJ38_23865) | 69550..70020 | + | 471 | WP_001526856.1 | hypothetical protein | VF |
| IUJ38_RS23970 (IUJ38_23870) | 70331..71149 | - | 819 | Protein_85 | DUF932 domain-containing protein | - |
| IUJ38_RS23975 (IUJ38_23875) | 71252..71410 | - | 159 | WP_001704449.1 | hypothetical protein | - |
| IUJ38_RS24170 | 71496..71624 | - | 129 | WP_000372429.1 | hypothetical protein | - |
| IUJ38_RS23980 (IUJ38_23880) | 71659..72396 | - | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| IUJ38_RS23985 (IUJ38_23885) | 72393..72827 | - | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| IUJ38_RS23990 (IUJ38_23890) | 72867..74864 | - | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| IUJ38_RS23995 (IUJ38_23895) | 74933..75175 | - | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| IUJ38_RS24000 (IUJ38_23900) | 75230..75748 | - | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| IUJ38_RS24005 (IUJ38_23905) | 76342..76503 | - | 162 | WP_153810625.1 | hypothetical protein | - |
| IUJ38_RS24010 (IUJ38_23910) | 76467..76790 | - | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| IUJ38_RS24015 (IUJ38_23915) | 77026..77460 | - | 435 | WP_000274533.1 | DUF1380 family protein | - |
| IUJ38_RS24020 (IUJ38_23920) | 77527..77961 | - | 435 | WP_001200150.1 | antirestriction protein | - |
| IUJ38_RS24025 (IUJ38_23925) | 78457..79221 | - | 765 | WP_001246548.1 | membrane protein | - |
| IUJ38_RS24030 (IUJ38_23930) | 79293..79706 | - | 414 | WP_000990114.1 | DUF1380 family protein | - |
| IUJ38_RS24035 (IUJ38_23935) | 79762..79983 | - | 222 | WP_001109588.1 | hypothetical protein | - |
| IUJ38_RS24040 (IUJ38_23940) | 79983..80663 | - | 681 | WP_000088645.1 | DNA methylase | - |
| IUJ38_RS24045 | 80826..81107 | + | 282 | WP_146671468.1 | hypothetical protein | - |
| IUJ38_RS24050 (IUJ38_23945) | 81045..81401 | - | 357 | WP_000369839.1 | hypothetical protein | - |
| IUJ38_RS24055 (IUJ38_23950) | 81394..81864 | - | 471 | WP_000490265.1 | hypothetical protein | - |
| IUJ38_RS24060 (IUJ38_23955) | 82375..82797 | + | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| IUJ38_RS24065 (IUJ38_23960) | 82797..84071 | + | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| IUJ38_RS24070 (IUJ38_23965) | 84153..85127 | - | 975 | WP_000064274.1 | ParB family protein | - |
| IUJ38_RS24075 (IUJ38_23970) | 85127..86332 | - | 1206 | WP_000427676.1 | AAA family ATPase | - |
| IUJ38_RS24080 (IUJ38_23975) | 86747..87688 | + | 942 | WP_000728917.1 | Recombination-promoting nuclease RpnA | VF |
| IUJ38_RS24085 (IUJ38_23980) | 87685..88286 | - | 602 | Protein_109 | DUF2913 family protein | - |
| IUJ38_RS24090 (IUJ38_23985) | 88343..88759 | - | 417 | WP_000988946.1 | hypothetical protein | - |
| IUJ38_RS24095 (IUJ38_23990) | 88862..89278 | - | 417 | WP_001541564.1 | hypothetical protein | - |
| IUJ38_RS24100 (IUJ38_23995) | 89364..90479 | - | 1116 | WP_001247118.1 | DNA-binding protein | - |
| IUJ38_RS24105 (IUJ38_24000) | 90738..91226 | + | 489 | WP_001135407.1 | hypothetical protein | - |
| IUJ38_RS24110 (IUJ38_24005) | 91881..92621 | + | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| IUJ38_RS24115 (IUJ38_24010) | 92828..93388 | + | 561 | WP_001240331.1 | Tn3 family transposase ISPsy42 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|