MGE detailed information
MGE type: Conjugative plasmid MGE length: 130357 bp
Accession: NZ_CP063154 Location: 1..130357 Organism: Escherichia coli strain M7424 Replicon: plasmid unnamed1
Accession: NZ_CP063154 Location: 1..130357 Organism: Escherichia coli strain M7424 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| INR48_RS23180 () | 1..978 | + | 978 | WP_001414517.1 | RepB family plasmid replication initiator protein | - |
| INR48_RS23185 () | 1263..2003 | - | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| INR48_RS23190 () | 2124..2249 | - | 126 | WP_188926504.1 | transcriptional regulator | - |
| INR48_RS23195 () | 2845..3705 | + | 861 | WP_188926506.1 | Right origin-binding protein | VF |
| INR48_RS23200 () | 3720..3995 | + | 276 | WP_188926508.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| INR48_RS23205 () | 3999..4469 | + | 471 | WP_188926510.1 | hypothetical protein | - |
| INR48_RS23210 () | 4469..5263 | + | 795 | WP_062858142.1 | hypothetical protein | - |
| INR48_RS23215 () | 5260..6519 | + | 1260 | WP_188926512.1 | hypothetical protein | - |
| INR48_RS23220 () | 6479..7738 | + | 1260 | WP_188926514.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| INR48_RS23225 () | 7742..8191 | + | 450 | WP_188926515.1 | hypothetical protein | - |
| INR48_RS23230 () | 8194..10134 | + | 1941 | WP_188926517.1 | ATP-binding cassette domain-containing protein | - |
| INR48_RS23235 () | 10195..17274 | + | 7080 | WP_193475628.1 | Ig-like domain repeat protein | - |
| INR48_RS23240 () | 17343..18470 | - | 1128 | Protein_12 | IS66 family transposase ISEc8 | Transposase |
| INR48_RS23245 () | 18520..18867 | - | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| INR48_RS23250 () | 18864..19244 | - | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| INR48_RS23255 () | 19335..20750 | - | 1416 | Protein_15 | NTPase | - |
| INR48_RS23260 () | 20752..21840 | - | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| INR48_RS23265 () | 22419..22637 | + | 219 | WP_000813639.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| INR48_RS23270 () | 22639..22944 | + | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| INR48_RS23275 () | 22997..23729 | + | 733 | Protein_19 | phage integrase family protein | - |
| INR48_RS23280 () | 24516..25271 | + | 756 | WP_000852143.1 | replication initiation protein RepE | - |
| INR48_RS23285 () | 25859..27025 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| INR48_RS23290 () | 27025..27996 | + | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| INR48_RS23295 () | 29042..29575 | + | 534 | Protein_23 | DUF1281 domain-containing protein | - |
| INR48_RS23300 () | 29579..29884 | + | 306 | Protein_24 | hypothetical protein | - |
| INR48_RS23305 () | 29961..30643 | + | 683 | Protein_25 | DNA methylase | - |
| INR48_RS23310 () | 30644..30865 | + | 222 | WP_001104883.1 | hypothetical protein | - |
| INR48_RS23315 () | 30879..31313 | + | 435 | WP_000274480.1 | DUF1380 family protein | - |
| INR48_RS23320 () | 31364..32143 | + | 780 | WP_053528480.1 | hypothetical protein | - |
| INR48_RS23325 () | 32683..32985 | + | 303 | WP_188926532.1 | antirestriction protein | - |
| INR48_RS23330 () | 33031..33450 | + | 420 | WP_188926521.1 | DUF1380 family protein | - |
| INR48_RS23335 () | 33450..33641 | + | 192 | WP_188926523.1 | hypothetical protein | - |
| INR48_RS23340 () | 33620..33962 | - | 343 | Protein_32 | pilus assembly protein | - |
| INR48_RS23345 () | 34643..34873 | + | 231 | WP_000218647.1 | hypothetical protein | - |
| INR48_RS23350 () | 34925..36286 | + | 1362 | WP_137592140.1 | DUF3560 domain-containing protein | - |
| INR48_RS23355 () | 36333..36896 | + | 564 | WP_012775864.1 | class I SAM-dependent methyltransferase | - |
| INR48_RS23360 () | 36854..37407 | - | 554 | Protein_36 | hypothetical protein | - |
| INR48_RS23365 () | 37708..38247 | + | 540 | WP_032219151.1 | single-stranded DNA-binding protein | - |
| INR48_RS23370 () | 38310..38543 | + | 234 | WP_000005988.1 | DUF905 family protein | - |
| INR48_RS23375 () | 38607..40566 | + | 1960 | Protein_39 | ParB/RepB/Spo0J family partition protein | - |
| INR48_RS23380 () | 40621..41055 | + | 435 | WP_000845926.1 | conjugation system SOS inhibitor PsiB | - |
| INR48_RS23385 () | 41052..41771 | + | 720 | WP_188926525.1 | plasmid SOS inhibition protein A | - |
| - () | 41783..41981 | + | 199 | NuclAT_0 | - | - |
| - () | 41783..41981 | + | 199 | NuclAT_0 | - | - |
| - () | 41783..41981 | + | 199 | NuclAT_0 | - | - |
| - () | 41783..41981 | + | 199 | NuclAT_0 | - | - |
| INR48_RS23390 () | 42046..42204 | + | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | - |
| INR48_RS23395 () | 42442..42759 | - | 318 | WP_001356354.1 | hypothetical protein | - |
| INR48_RS23400 () | 43192..43389 | + | 198 | WP_045174704.1 | hypothetical protein | - |
| INR48_RS23405 () | 43508..44329 | + | 822 | WP_188926533.1 | DUF945 domain-containing protein | - |
| INR48_RS23410 () | 44625..45215 | - | 591 | WP_001375132.1 | hypothetical protein | VF |
| INR48_RS23415 () | 45567..45950 | + | 384 | WP_001063020.1 | relaxosome protein TraM | - |
| INR48_RS23420 () | 46142..46789 | + | 648 | WP_000332520.1 | conjugal transfer transcriptional regulator TraJ | - |
| INR48_RS23425 () | 46925..47140 | + | 216 | WP_001352842.1 | conjugal transfer relaxosome protein TraY | - |
| INR48_RS23430 () | 47183..47548 | + | 366 | WP_000340282.1 | type IV conjugative transfer system pilin TraA | - |
| INR48_RS23435 () | 47563..47874 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| INR48_RS23440 () | 47896..48462 | + | 567 | WP_000399790.1 | type IV conjugative transfer system protein TraE | - |
| INR48_RS23445 () | 48473..49177 | + | 705 | WP_148713163.1 | type-F conjugative transfer system secretin TraK | - |
| INR48_RS23450 () | 49177..50604 | + | 1428 | WP_000146676.1 | conjugal transfer protein TraB | - |
| INR48_RS23455 () | 50594..50965 | + | 372 | Protein_55 | conjugal transfer protein TraP | - |
| INR48_RS23460 () | 51002..52215 | + | 1214 | WP_085949589.1 | IS3 family transposase ISEc31 | Transposase |
| INR48_RS23465 () | 52239..52445 | + | 207 | WP_075051332.1 | traP family protein | - |
| INR48_RS23470 () | 52399..52629 | + | 231 | WP_001352845.1 | conjugal transfer protein TrbD | - |
| INR48_RS23475 () | 52641..52892 | + | 252 | WP_188926526.1 | conjugal transfer protein TrbG | - |
| INR48_RS23480 () | 52889..53404 | + | 516 | WP_000809838.1 | type IV conjugative transfer system lipoprotein TraV | - |
| INR48_RS23485 () | 53539..53760 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| INR48_RS23490 () | 53920..56547 | + | 2628 | WP_188926528.1 | type IV secretion system protein TraC | - |
| INR48_RS23495 () | 56544..56930 | + | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| INR48_RS23500 () | 56927..57559 | + | 633 | WP_001203717.1 | type-F conjugative transfer system protein TraW | - |
| INR48_RS23505 () | 57556..58548 | + | 993 | WP_000830183.1 | conjugal transfer pilus assembly protein TraU | - |
| INR48_RS23510 () | 58557..59195 | + | 639 | WP_000777695.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| INR48_RS23515 () | 59192..61000 | + | 1809 | WP_000821838.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| INR48_RS23520 () | 61027..61284 | + | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| INR48_RS23525 () | 61277..62020 | + | 744 | WP_001030378.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| INR48_RS23530 () | 62036..62383 | + | 348 | WP_032185993.1 | conjugal transfer protein TrbA | - |
| INR48_RS23535 () | 62463..62699 | - | 237 | WP_001352846.1 | hypothetical protein | - |
| INR48_RS23540 () | 62780..63064 | + | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| INR48_RS23545 () | 63051..63596 | + | 546 | WP_000059851.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| INR48_RS23550 () | 63526..63873 | + | 348 | WP_188926530.1 | P-type conjugative transfer protein TrbJ | - |
| INR48_RS23555 () | 63821..64235 | + | 415 | Protein_75 | F-type conjugal transfer protein TrbF | - |
| INR48_RS23560 () | 64235..65608 | + | 1374 | WP_170816519.1 | conjugal transfer protein TraH | - |
| INR48_RS23565 () | 65605..68421 | + | 2817 | WP_188926459.1 | conjugal transfer mating pair stabilization protein TraG | - |
| INR48_RS23570 () | 68454..68975 | + | 522 | WP_000632670.1 | conjugal transfer entry exclusion protein TraS | - |
| INR48_RS23575 () | 69000..69731 | + | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| INR48_RS23580 () | 69984..72164 | + | 2181 | WP_193475627.1 | type IV conjugative transfer system coupling protein TraD | - |
| INR48_RS23585 () | 72173..72571 | - | 399 | WP_000911315.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| INR48_RS23590 () | 72571..72798 | - | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| INR48_RS23595 () | 72880..78150 | + | 5271 | WP_188926463.1 | Multifunctional conjugation protein TraI | Relaxase |
| INR48_RS23600 () | 78170..78910 | + | 741 | WP_188926465.1 | conjugal transfer pilus acetylase TraX | - |
| INR48_RS23605 () | 78969..79828 | + | 860 | Protein_85 | alpha/beta hydrolase | - |
| INR48_RS23610 () | 79931..80491 | + | 561 | WP_032219136.1 | fertility inhibition protein FinO | - |
| INR48_RS23615 () | 80620..80835 | + | 216 | WP_032219135.1 | hypothetical protein | - |
| INR48_RS23620 () | 81555..81989 | + | 435 | WP_188926466.1 | IS66 family transposase ISEc43 | Transposase |
| INR48_RS23625 () | 81986..82336 | + | 351 | WP_188926468.1 | IS66 family transposase IS682 | Transposase |
| INR48_RS23630 () | 82367..83955 | + | 1589 | Protein_90 | IS66 family transposase ISEc23 | Transposase |
| INR48_RS23635 () | 84448..85671 | + | 1224 | WP_062858062.1 | autotransporter strand-loop-strand O-heptosyltransferase | - |
| INR48_RS23640 () | 85691..86239 | + | 549 | WP_188926476.1 | AIDA repeat-containing protein | - |
| INR48_RS23645 () | 86403..86585 | + | 183 | Protein_93 | prepilin peptidase | - |
| INR48_RS23650 () | 86651..87061 | + | 411 | WP_188926478.1 | type II secretion system pilot lipoprotein GspS-beta | - |
| INR48_RS23655 () | 87079..88038 | + | 960 | WP_188926480.1 | Type II secretion system protein C | VF |
| INR48_RS23660 () | 88068..90128 | + | 2061 | WP_000498817.1 | Type II secretion system protein D | VF |
| INR48_RS23665 () | 90128..91621 | + | 1494 | WP_188926482.1 | Type II secretion system protein E | VF |
| INR48_RS23670 () | 91621..92844 | + | 1224 | WP_001173433.1 | Type II secretion system protein F | VF |
| INR48_RS23675 () | 92861..93316 | + | 456 | WP_188926484.1 | Type II secretion system protein G | VF |
| INR48_RS23680 () | 93320..93883 | + | 564 | WP_188926486.1 | Type II secretion system protein H | VF |
| INR48_RS23685 () | 93880..94251 | + | 372 | WP_188926488.1 | Type II secretion system protein I | VF |
| INR48_RS23690 () | 94248..94853 | + | 606 | WP_001514540.1 | Type II secretion system protein J | VF |
| INR48_RS23695 () | 94850..95827 | + | 978 | WP_000633221.1 | Putative type II secretion system protein K | VF |
| INR48_RS23700 () | 95824..97017 | + | 1194 | WP_188926490.1 | Type II secretion system protein L | VF |
| INR48_RS23705 () | 97004..97540 | + | 537 | WP_188926492.1 | Type II secretion system protein M | VF |
| INR48_RS23710 () | 97577..97799 | - | 223 | Protein_106 | IS3 family transposase | - |
| INR48_RS23715 () | 97955..98689 | + | 735 | WP_188926494.1 | Heat-labile enterotoxin IIB, A chain | VF |
| INR48_RS23720 () | 98692..99060 | + | 369 | WP_188926496.1 | Heat-labile enterotoxin IIA, B chain | - |
| INR48_RS23725 () | 99317..99859 | - | 543 | Protein_109 | Tn3 family transposase | - |
| INR48_RS23730 () | 99898..101131 | - | 1234 | Protein_110 | IS66 family transposase ISKpn24 | Transposase |
| INR48_RS23735 () | 101195..101449 | + | 255 | Protein_111 | IS3 family transposase | - |
| INR48_RS23740 () | 101550..101797 | + | 248 | Protein_112 | ATP-binding protein | - |
| INR48_RS23745 () | 102023..102238 | + | 216 | WP_062858042.1 | hypothetical protein | - |
| INR48_RS23750 () | 102640..103777 | - | 1138 | Protein_114 | IS3 family transposase IS3F | Transposase |
| INR48_RS23755 () | 104004..105356 | + | 1353 | WP_062858040.1 | esterase-like activity of phytase family protein | - |
| INR48_RS23760 () | 105530..106036 | - | 507 | WP_062858039.1 | thiol peroxidase | - |
| INR48_RS23765 () | 107069..108556 | + | 1488 | WP_188926535.1 | PhoPQ-regulated protein | - |
| INR48_RS23770 () | 109320..109583 | + | 264 | WP_062858037.1 | hypothetical protein | - |
| INR48_RS23775 () | 109573..109872 | + | 300 | Protein_119 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| INR48_RS23780 () | 110400..111005 | - | 606 | WP_062858035.1 | proQ/FINO family protein | - |
| INR48_RS23785 () | 111445..111677 | + | 233 | Protein_121 | hypothetical protein | - |
| INR48_RS23790 () | 111885..112063 | + | 179 | Protein_122 | conjugal transfer protein | - |
| INR48_RS23795 () | 112122..112979 | + | 858 | WP_188926498.1 | putative protein YcjY | VF |
| INR48_RS23800 () | 113072..113547 | - | 476 | Protein_124 | IS256 family transposase IS1414 | Transposase |
| INR48_RS23805 () | 113811..114013 | - | 203 | Protein_125 | IS91 family transposase | - |
| INR48_RS23810 () | 114066..114494 | - | 429 | Protein_126 | IS3 family transposase IS2 | Transposase |
| INR48_RS23815 () | 114692..115648 | + | 957 | WP_188926500.1 | Ferri-bacillibactin esterase BesA | VF |
| INR48_RS23820 () | 115693..116386 | - | 694 | Protein_128 | Ferrienterobactin receptor | VF |
| INR48_RS23825 () | 117230..117540 | + | 311 | Protein_129 | hypothetical protein | - |
| INR48_RS23830 () | 118153..119808 | + | 1656 | WP_062858027.1 | L-lactate permease | - |
| INR48_RS23835 () | 119808..120584 | + | 777 | WP_188926502.1 | transcriptional regulator LldR | - |
| INR48_RS23840 () | 120581..121730 | + | 1150 | Protein_132 | quinone-dependent L-lactate dehydrogenase | - |
| INR48_RS23845 () | 122815..123720 | - | 906 | Protein_133 | IS3 family transposase ISEc31 | Transposase |
| INR48_RS23850 () | 123785..124936 | + | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| INR48_RS23855 () | 124949..125251 | - | 303 | Protein_135 | IS3 family transposase ISEc31 | Transposase |
| INR48_RS23860 () | 125436..125551 | - | 116 | Protein_136 | IS110 family transposase ISEc21 | Transposase |
| INR48_RS23870 () | 126874..127368 | - | 495 | Protein_138 | IS3 family transposase ISEc31 | Transposase |
| INR48_RS23875 () | 127378..128529 | - | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| INR48_RS23880 () | 128594..128773 | - | 180 | Protein_140 | IS3 family transposase | - |
| INR48_RS23885 () | 128896..129147 | + | 252 | WP_001132895.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| INR48_RS23890 () | 129144..129431 | + | 288 | WP_001270417.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| INR48_RS23895 () | 129430..129678 | + | 249 | Protein_143 | transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|