MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP062245 Location: 1406256..1427930 Organism: Escherichia coli strain AML003_ev01 Replicon: chromosome
Accession: NZ_CP062245 Location: 1406256..1427930 Organism: Escherichia coli strain AML003_ev01 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHN50_RS06885 () | 1402306..1403289 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| IHN50_RS06890 () | 1403767..1405140 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| IHN50_RS06895 () | 1405269..1406204 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| IHN50_RS06900 () | 1406256..1407491 | - | 1236 | WP_000040852.1 | site-specific integrase | - |
| IHN50_RS06905 () | 1407493..1407708 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| IHN50_RS06910 () | 1407787..1407996 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1407812..1407990 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1407812..1407990 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1407812..1407990 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1407812..1407990 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| IHN50_RS06915 () | 1407989..1408183 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| IHN50_RS06920 () | 1408240..1409049 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| IHN50_RS06925 () | 1409042..1411642 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| IHN50_RS06930 () | 1411744..1412019 | - | 276 | WP_000632297.1 | protein RacC | - |
| IHN50_RS06935 () | 1412094..1412264 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| IHN50_RS06940 () | 1412264..1412485 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| IHN50_RS06945 () | 1412927..1413415 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| IHN50_RS06950 () | 1413412..1413567 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| IHN50_RS06955 () | 1414021..1414497 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| IHN50_RS06960 () | 1414621..1414917 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| IHN50_RS06965 () | 1414940..1415362 | + | 423 | WP_000693797.1 | phage protein | - |
| IHN50_RS06970 () | 1415375..1416232 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| IHN50_RS06975 () | 1416239..1416985 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| IHN50_RS06980 () | 1417008..1417568 | + | 561 | WP_000450663.1 | DUF1627 domain-containing protein | - |
| IHN50_RS06985 () | 1417656..1417841 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| IHN50_RS06990 () | 1418038..1419495 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| IHN50_RS06995 () | 1419633..1419896 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| IHN50_RS07000 () | 1419877..1420236 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| IHN50_RS07005 () | 1420710..1421642 | + | 933 | Protein_1364 | phage tail length tape measure family protein | - |
| IHN50_RS07010 () | 1421645..1421860 | + | 216 | Protein_1365 | Ail/Lom family outer membrane beta-barrel protein | - |
| IHN50_RS07015 () | 1422002..1422982 | - | 981 | WP_000019448.1 | IS5-like element ISKpn26 family transposase | - |
| IHN50_RS07020 () | 1423052..1423240 | + | 189 | Protein_1367 | Ail/Lom family outer membrane beta-barrel protein | - |
| IHN50_RS07025 () | 1423305..1426667 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| IHN50_RS07030 () | 1426667..1427242 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| IHN50_RS07035 () | 1427340..1427930 | - | 591 | WP_000086527.1 | recombinase family protein | - |
| IHN50_RS07040 () | 1428247..1428480 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| IHN50_RS07045 () | 1428549..1428662 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| IHN50_RS07050 () | 1429441..1429875 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| IHN50_RS07055 () | 1430016..1431149 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |