MGE detailed information
MGE type: Genomic_island MGE length: 32080 bp
Accession: NZ_CP062240 Location: 2749518..2781597 Organism: Escherichia coli strain AML001_ev02 Replicon: chromosome
Accession: NZ_CP062240 Location: 2749518..2781597 Organism: Escherichia coli strain AML001_ev02 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHN55_RS13360 () | 2745154..2746815 | + | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| IHN55_RS13365 () | 2746964..2747305 | + | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| IHN55_RS13370 () | 2747367..2747657 | - | 291 | WP_001117838.1 | RnfH family protein | - |
| IHN55_RS13375 () | 2747647..2748123 | - | 477 | WP_000600189.1 | type II toxin-antitoxin system toxin RatA | - |
| IHN55_RS13380 () | 2748255..2748737 | + | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| IHN55_RS13390 () | 2749518..2750759 | + | 1242 | WP_000101723.1 | hypothetical protein ; Integrase | Integrase |
| IHN55_RS13395 () | 2751003..2751959 | - | 957 | WP_000510827.1 | hypothetical protein | - |
| IHN55_RS13400 () | 2752003..2752215 | + | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| IHN55_RS13405 () | 2752344..2753753 | + | 1410 | WP_000481742.1 | DUF3987 domain-containing protein | - |
| IHN55_RS13410 () | 2753906..2754532 | + | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| IHN55_RS13415 () | 2754710..2756899 | - | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| IHN55_RS13420 () | 2756896..2758512 | - | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| IHN55_RS13425 () | 2758872..2759135 | - | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| IHN55_RS13430 () | 2759277..2760350 | + | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| IHN55_RS13435 () | 2760343..2760714 | + | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| IHN55_RS13440 () | 2761069..2761932 | + | 864 | WP_000787597.1 | GTPase family protein | - |
| IHN55_RS13445 () | 2762024..2762845 | + | 822 | WP_000197391.1 | DUF945 domain-containing protein | - |
| IHN55_RS13450 () | 2763062..2763763 | + | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| IHN55_RS13455 () | 2763804..2764040 | + | 237 | WP_001144029.1 | hypothetical protein | - |
| IHN55_RS13460 () | 2764040..2764483 | + | 444 | WP_000824222.1 | hypothetical protein | - |
| IHN55_RS13465 () | 2764507..2764974 | + | 468 | WP_000702495.1 | hypothetical protein | - |
| IHN55_RS13470 () | 2765199..2765513 | - | 315 | WP_000065803.1 | arsenate reductase | - |
| IHN55_RS13475 () | 2765526..2766535 | - | 1010 | Protein_2634 | arsenic transporter | - |
| IHN55_RS13480 () | 2766677..2768380 | + | 1704 | WP_000896263.1 | hypothetical protein | - |
| IHN55_RS13485 () | 2768952..2769175 | + | 224 | Protein_2636 | DUF905 family protein | - |
| IHN55_RS13490 () | 2769278..2769736 | + | 459 | WP_000211841.1 | antirestriction protein | - |
| IHN55_RS13495 () | 2769745..2770227 | + | 483 | WP_001407480.1 | RadC family protein | - |
| IHN55_RS13500 () | 2770236..2770436 | + | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| IHN55_RS13505 () | 2770474..2770791 | + | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| IHN55_RS13510 () | 2770812..2771141 | + | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| IHN55_RS13515 () | 2771505..2776085 | - | 4581 | WP_010723187.1 | hypothetical protein | VF |
| IHN55_RS13520 () | 2776150..2776269 | - | 120 | WP_001120794.1 | hypothetical protein | - |
| IHN55_RS13525 () | 2776424..2776642 | - | 219 | WP_071524906.1 | recombinase family protein | - |
| IHN55_RS13530 () | 2776997..2778370 | - | 1374 | Protein_2645 | DUF5507 domain-containing protein | - |
| IHN55_RS13540 () | 2779756..2780088 | + | 333 | WP_001326687.1 | hypothetical protein | - |
| IHN55_RS13545 () | 2780107..2782008 | + | 1902 | Protein_2647 | alpha amylase C-terminal domain-containing protein | - |
| IHN55_RS13550 () | 2782344..2783321 | + | 978 | WP_000993126.1 | carbon starvation induced protein CsiD | - |
| IHN55_RS13555 () | 2783341..2784609 | + | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| IHN55_RS13560 () | 2784632..2786080 | + | 1449 | WP_000772831.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0.001 |