MGE detailed information
MGE type: Conjugative plasmid MGE length: 83974 bp
Accession: NZ_CP062214 Location: 1..83974 Organism: Escherichia coli strain L3Cip3 Replicon: plasmid unnamed3
Accession: NZ_CP062214 Location: 1..83974 Organism: Escherichia coli strain L3Cip3 Replicon: plasmid unnamed3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IFO96_RS25395 () | 1..858 | + | 858 | WP_032495102.1 | incFII family plasmid replication initiator RepA | - |
| IFO96_RS25400 () | 1559..1699 | + | 141 | WP_001333237.1 | hypothetical protein | - |
| IFO96_RS25405 () | 1797..2450 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| IFO96_RS25410 () | 2543..2800 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| IFO96_RS25415 () | 2733..3134 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| IFO96_RS25420 () | 3383..3798 | + | 416 | Protein_6 | IS1 family transposase IS1R | Transposase |
| IFO96_RS25425 () | 3834..4379 | - | 546 | Protein_7 | Tn3 family transposase TnpA_Tn3 | Transposase |
| IFO96_RS25430 () | 4445..5149 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| IFO96_RS25435 () | 5263..6039 | + | 777 | WP_001199192.1 | hypothetical protein | ARG |
| IFO96_RS25440 () | 6268..7293 | + | 1026 | WP_000742814.1 | Hygromycin-B 4-O-kinase | ARG |
| IFO96_RS25445 () | 7299..7664 | + | 366 | Protein_11 | AAC(3) family N-acetyltransferase | - |
| IFO96_RS25450 () | 7715..8467 | - | 753 | WP_000602738.1 | IS6 family transposase ISRle7 | Transposase |
| IFO96_RS25455 () | 8553..10052 | + | 1500 | Protein_13 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| IFO96_RS25460 () | 10049..11323 | - | 1275 | WP_167811043.1 | IS91 family transposase ISVsa3 | Transposase |
| IFO96_RS25465 () | 11398..12171 | - | 774 | WP_001053381.1 | IS21 family transposase ISEc57 | Transposase |
| IFO96_RS25470 () | 12171..13196 | - | 1026 | WP_192301393.1 | IS21 family transposase ISEc57 | Transposase |
| IFO96_RS25475 () | 13285..13446 | - | 162 | Protein_17 | IS91 family transposase | - |
| IFO96_RS25480 () | 13558..13863 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator HdfR | VF |
| IFO96_RS25485 () | 13891..15105 | - | 1215 | WP_058100717.1 | Multidrug resistance protein MdtL | ARG |
| IFO96_RS25490 () | 15322..16206 | - | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| IFO96_RS25495 () | 16237..17073 | - | 837 | WP_192301394.1 | IS91 family transposase ISVsa3 | Transposase |
| IFO96_RS25500 () | 17064..17768 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| IFO96_RS25505 () | 17821..18213 | + | 393 | Protein_23 | Tn3 family transposase TnpR_Tn3 | Transposase |
| IFO96_RS25510 () | 18396..19256 | + | 861 | WP_000027057.1 | hypothetical protein | ARG |
| IFO96_RS25515 () | 19426..20181 | + | 756 | WP_012372818.1 | hypothetical protein | ARG |
| IFO96_RS25520 () | 20307..21011 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| IFO96_RS25525 () | 21061..21804 | + | 744 | Protein_27 | hypothetical protein | ARG |
| IFO96_RS25530 () | 22063..22539 | + | 477 | WP_013023839.1 | WbuC family cupin fold metalloprotein | - |
| IFO96_RS25535 () | 22586..23461 | - | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| IFO96_RS25540 () | 23883..24587 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| IFO96_RS25545 () | 24653..24718 | + | 66 | Protein_31 | IS1 family transposase | - |
| IFO96_RS25550 () | 26167..26401 | + | 235 | Protein_32 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| IFO96_RS25555 () | 26529..26810 | + | 282 | WP_001333089.1 | hypothetical protein | - |
| IFO96_RS25560 () | 26933..27283 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| IFO96_RS25565 () | 27286..28248 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| IFO96_RS25570 () | 28395..28688 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| IFO96_RS25575 () | 28765..29448 | + | 684 | WP_000085883.1 | DNA methylase | - |
| IFO96_RS25580 () | 29449..29670 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| IFO96_RS25585 () | 29684..30118 | + | 435 | WP_000274503.1 | DUF1380 family protein | - |
| IFO96_RS25590 () | 30169..30945 | + | 777 | WP_001383963.1 | hypothetical protein | - |
| IFO96_RS25595 () | 31486..31788 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| IFO96_RS25600 () | 31835..32257 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| IFO96_RS25605 () | 32254..32445 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| IFO96_RS25610 () | 33483..33713 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| IFO96_RS25615 () | 33765..35126 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| IFO96_RS25620 () | 35173..35736 | + | 564 | WP_015059007.1 | class I SAM-dependent methyltransferase | - |
| IFO96_RS25625 () | 36579..37106 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| IFO96_RS25630 () | 37164..37397 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| IFO96_RS25635 () | 37458..39481 | + | 2024 | Protein_49 | ParB/RepB/Spo0J family partition protein | - |
| IFO96_RS25640 () | 39550..39984 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| IFO96_RS25645 () | 39981..40700 | + | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| - () | 40712..40936 | + | 225 | NuclAT_0 | - | - |
| - () | 40712..40936 | + | 225 | NuclAT_0 | - | - |
| - () | 40712..40936 | + | 225 | NuclAT_0 | - | - |
| - () | 40712..40936 | + | 225 | NuclAT_0 | - | - |
| IFO96_RS25650 () | 40721..40900 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| IFO96_RS25655 () | 40980..41138 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| IFO96_RS25660 () | 41376..41753 | - | 378 | Protein_54 | hypothetical protein | - |
| IFO96_RS25665 () | 42053..42349 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| IFO96_RS25670 () | 42460..43281 | + | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| IFO96_RS25675 () | 43578..44225 | - | 648 | WP_015059008.1 | hypothetical protein | VF |
| IFO96_RS25680 () | 44502..44885 | + | 384 | WP_000124981.1 | relaxosome protein TraM | - |
| IFO96_RS25685 () | 45076..45762 | + | 687 | WP_015059009.1 | PAS domain-containing protein | - |
| IFO96_RS25690 () | 45856..46083 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| IFO96_RS25695 () | 46117..46482 | + | 366 | WP_021519752.1 | type IV conjugative transfer system pilin TraA | - |
| IFO96_RS25700 () | 46497..46808 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| IFO96_RS25705 () | 46830..47396 | + | 567 | WP_000399794.1 | type IV conjugative transfer system protein TraE | - |
| IFO96_RS25710 () | 47407..48111 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| IFO96_RS25715 () | 48111..49538 | + | 1428 | WP_032297072.1 | conjugal transfer protein TraB | - |
| IFO96_RS25720 () | 49528..50118 | + | 591 | WP_000002778.1 | conjugal transfer protein TraP | - |
| IFO96_RS25725 () | 50072..50302 | + | 231 | WP_001352845.1 | conjugal transfer protein TrbD | - |
| IFO96_RS25730 () | 50314..50565 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| IFO96_RS25735 () | 50562..51077 | + | 516 | WP_000809902.1 | type IV conjugative transfer system lipoprotein TraV | - |
| IFO96_RS25740 () | 51212..51433 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| IFO96_RS25745 () | 51593..54220 | + | 2628 | WP_015059012.1 | type IV secretion system protein TraC | - |
| IFO96_RS25750 () | 54217..54603 | + | 387 | WP_015059013.1 | type-F conjugative transfer system protein TrbI | - |
| IFO96_RS25755 () | 54600..55232 | + | 633 | WP_001203735.1 | type-F conjugative transfer system protein TraW | - |
| IFO96_RS25760 () | 55229..56221 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| IFO96_RS25765 () | 56248..56556 | + | 309 | WP_000412447.1 | hypothetical protein | - |
| IFO96_RS25770 () | 56619..57140 | + | 522 | WP_015059014.1 | hypothetical protein | - |
| IFO96_RS25775 () | 57167..57805 | + | 639 | WP_000087532.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| IFO96_RS25780 () | 57802..58173 | + | 372 | WP_000056336.1 | hypothetical protein | - |
| IFO96_RS25785 () | 58199..58621 | + | 423 | WP_001229309.1 | HNH endonuclease | - |
| IFO96_RS25790 () | 58618..60468 | + | 1851 | WP_015059015.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| IFO96_RS25795 () | 60495..60752 | + | 258 | WP_053913405.1 | conjugal transfer protein TrbE | - |
| IFO96_RS25800 () | 60745..61488 | + | 744 | WP_015059017.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| IFO96_RS25805 () | 61604..61885 | + | 282 | WP_000549793.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| IFO96_RS25810 () | 61872..62417 | + | 546 | WP_000059817.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| IFO96_RS25815 () | 62347..62721 | + | 375 | WP_071776752.1 | P-type conjugative transfer protein TrbJ | - |
| IFO96_RS25820 () | 62675..63067 | + | 393 | WP_000126338.1 | F-type conjugal transfer protein TrbF | - |
| IFO96_RS25825 () | 63054..64427 | + | 1374 | WP_000944325.1 | conjugal transfer protein TraH | - |
| IFO96_RS25830 () | 64424..67240 | + | 2817 | WP_015059018.1 | conjugal transfer mating pair stabilization protein TraG | - |
| IFO96_RS25835 () | 67273..67794 | + | 522 | WP_000632668.1 | conjugal transfer entry exclusion protein TraS | - |
| IFO96_RS25840 () | 67819..68550 | + | 732 | WP_021559024.1 | complement resistance protein TraT | - |
| IFO96_RS25845 () | 68855..70468 | - | 1614 | WP_047063389.1 | IS66 family transposase ISEc23 | Transposase |
| IFO96_RS25850 () | 70499..70849 | - | 351 | WP_001565133.1 | IS66 family transposase ISEc47 | Transposase |
| IFO96_RS25855 () | 70846..71271 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| IFO96_RS25860 () | 71488..72030 | + | 543 | WP_089075763.1 | hypothetical protein | - |
| IFO96_RS25865 () | 72081..74315 | + | 2235 | WP_032316743.1 | type IV conjugative transfer system coupling protein TraD | - |
| IFO96_RS25870 () | 74315..79585 | + | 5271 | WP_061093447.1 | Multifunctional conjugation protein TraI | Relaxase |
| IFO96_RS25875 () | 79605..80351 | + | 747 | WP_000205770.1 | conjugal transfer pilus acetylase TraX | - |
| IFO96_RS25880 () | 80406..80966 | + | 561 | WP_000139328.1 | fertility inhibition protein FinO | - |
| IFO96_RS25885 () | 81098..81298 | + | 201 | WP_015059022.1 | hypothetical protein | - |
| IFO96_RS25890 () | 81684..82283 | + | 600 | WP_032083981.1 | hypothetical protein | - |
| IFO96_RS25895 () | 82447..82677 | + | 231 | WP_001736714.1 | hypothetical protein | - |
| - () | 82878..82937 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 82878..82937 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 82878..82937 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 82878..82937 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| IFO96_RS25900 () | 82982..83131 | + | 150 | WP_001312851.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| IFO96_RS25905 () | 83415..83663 | + | 249 | WP_000083837.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|