MGE detailed information

MGE type: Conjugative plasmid        MGE length: 177038 bp
Accession: NZ_CP062212        Location: 1..177038         Organism: Escherichia coli strain L3Cip3       Replicon: plasmid unnamed1


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IFO96_RS23980 () 1..978 + 978 WP_000361611.1 RepB family plasmid replication initiator protein -
IFO96_RS23985 () 1263..2003 - 741 WP_001066954.1 tyrosine-type recombinase/integrase -
IFO96_RS23990 () 2124..2312 - 189 WP_001324033.1 hypothetical protein -
IFO96_RS23995 () 2686..3588 - 903 WP_001312822.1 hypothetical protein VF
IFO96_RS24000 () 3657..4766 - 1110 WP_000771475.1 SDR family oxidoreductase -
IFO96_RS24005 () 5199..6152 - 954 WP_000280980.1 Protease 7 VF
IFO96_RS24010 () 7425..7583 - 159 WP_001324039.1 integrase core domain-containing protein -
IFO96_RS24015 () 7767..8966 + 1200 Protein_7 IS3 family transposase IS629 Transposase
IFO96_RS24020 () 9114..9439 - 326 Protein_8 IS3 family transposase ISLad1 Transposase
IFO96_RS24025 () 10420..11607 + 1188 WP_192301389.1 efflux RND transporter periplasmic adaptor subunit -
IFO96_RS24030 () 11604..13544 + 1941 WP_000733250.1 Macrolide export ATP-binding/permease protein MacB VF
IFO96_RS24035 () 13548..14918 + 1371 WP_001312828.1 efflux transporter outer membrane subunit -
IFO96_RS24040 () 15392..15586 + 195 Protein_12 IS200/IS605 family transposase -
IFO96_RS24045 () 15715..16656 - 942 WP_000974762.1 hypothetical protein -
IFO96_RS24050 () 16891..18280 - 1390 Protein_14 ISNCY family transposase ISKpn21 Transposase
IFO96_RS24055 () 18590..18739 - 150 Protein_15 IS3 family transposase IS2 Transposase
IFO96_RS24060 () 18917..20110 - 1194 WP_000450494.1 GTP-binding protein -
IFO96_RS24065 () 21352..22080 - 729 Protein_17 IS3 family transposase IS2 Transposase
IFO96_RS24070 () 22142..23304 + 1163 WP_085947598.1 IS3 family transposase ISEc17 Transposase
IFO96_RS24075 () 23321..23886 - 566 Protein_19 IS3 family transposase IS2 Transposase
IFO96_RS24080 () 24466..24759 + 294 WP_000738422.1 increased serum survival lipoprotein Iss -
IFO96_RS24085 () 24817..24992 - 176 Protein_21 lysis protein -
IFO96_RS24090 () 25570..26669 + 1100 Protein_22 IS481 family transposase ISKpn28 Transposase
IFO96_RS24095 () 27905..29020 + 1116 WP_001318220.1 Elloramycin glycosyltransferase ElmGT VF
IFO96_RS24100 () 29160..32819 + 3660 WP_001389363.1 Multidrug efflux ATP-binding/permease protein VF
IFO96_RS24105 () 32923..34152 + 1230 WP_192301390.1 Enterochelin esterase VF
IFO96_RS24110 () 34237..35193 + 957 WP_000271274.1 Ferri-bacillibactin esterase BesA VF
IFO96_RS24115 () 35238..37415 - 2178 WP_001222185.1 Ferric enterobactin receptor VF
IFO96_RS24120 () 38281..39315 - 1035 WP_001190234.1 3-deoxy-7-phosphoheptulonate synthase -
IFO96_RS24125 () 39875..40183 - 309 WP_000377483.1 hypothetical protein -
IFO96_RS24130 () 40282..40464 - 183 WP_000969988.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
IFO96_RS24135 () 40461..40658 - 198 WP_001324224.1 toxin-antitoxin system protein Antitoxin Detail
IFO96_RS24140 () 41340..42614 + 1275 WP_192301391.1 HlyD family secretion protein -
IFO96_RS24145 () 42589..44703 + 2115 WP_001183604.1 peptidase domain-containing ABC transporter -
IFO96_RS24150 () 44873..45184 - 312 WP_001259758.1 colicin V -
IFO96_RS24155 () 45162..45398 - 237 WP_001323890.1 colicin V immunity protein -
IFO96_RS24160 () 45559..46336 + 778 Protein_36 Gfo/Idh/MocA family oxidoreductase -
IFO96_RS24165 () 46338..46607 + 270 WP_000379710.1 SemiSWEET transporter -
IFO96_RS24170 () 46604..47584 + 981 WP_001017346.1 NAD(P)-binding domain-containing protein -
IFO96_RS24175 () 47660..48040 + 381 WP_021566758.1 IS66 family transposase ISEc8 Transposase
IFO96_RS24180 () 48037..48384 + 348 WP_000612601.1 IS66 family transposase ISEc8 Transposase
IFO96_RS24185 () 48434..49972 + 1539 WP_192301392.1 IS66 family transposase ISEc8 Transposase
IFO96_RS24190 () 50012..50278 + 267 Protein_42 Tn3 family transposase TnpR_TnEc1 Transposase
IFO96_RS24195 () 50370..51374 + 1005 WP_000427619.1 IS110 family transposase IS5075 Transposase
IFO96_RS24200 () 51631..52044 - 414 Protein_44 peptide deformylase -
IFO96_RS24205 () 52153..56286 - 4134 WP_001080137.1 Temperature-sensitive hemagglutinin tsh autotransporter VF
IFO96_RS24210 () 56477..56831 - 355 Protein_46 helix-turn-helix transcriptional regulator -
IFO96_RS24215 () 56927..57184 + 258 Protein_47 IS3 family transposase IS911 Transposase
IFO96_RS24220 () 57252..58403 + 1152 WP_001442799.1 IS30 family transposase IS30D Transposase
IFO96_RS24225 () 58525..58890 + 366 WP_000124098.1 hypothetical protein -
IFO96_RS24230 () 58890..60005 + 1116 Protein_50 IS91 family transposase IS91 Transposase
IFO96_RS24235 () 60534..61238 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
IFO96_RS24240 () 61304..62818 + 1515 Protein_52 Tn3 family transposase TnpA_TnAs1 Transposase
IFO96_RS24245 () 62876..63118 + 243 WP_000844627.1 transposase -
IFO96_RS24250 () 63150..63800 - 651 WP_001493764.1 tetracycline resistance transcriptional repressor TetR(A) -
IFO96_RS24255 () 63906..65105 + 1200 WP_001493765.1 Tetracycline resistance protein, class C ARG
IFO96_RS24260 () 65137..66021 - 885 WP_000058717.1 EamA family transporter -
IFO96_RS24265 () 66159..66566 - 408 WP_001214976.1 cysteine hydrolase -
IFO96_RS24270 () 66555..68306 + 1752 Protein_58 Tn3 family transposase TnpA_TnAs1 Transposase
IFO96_RS24275 () 69284..69988 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
IFO96_RS24280 () 70436..71449 - 1014 WP_000845048.1 IS91 family transposase ISAzo26 Transposase
IFO96_RS24285 () 71605..72078 + 474 WP_004201280.1 Dihydrofolate reductase type 1 ARG
IFO96_RS24290 () 72148..72852 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
IFO96_RS24295 () 72906..73220 + 315 Protein_63 Tn3 family transposase TnpR_TnAs3 Transposase
IFO96_RS24300 () 73223..76189 + 2967 WP_001138070.1 Tn3 family transposase TnpA_ISPa38 Transposase
IFO96_RS24305 () 76268..77272 + 1005 WP_000427619.1 IS110 family transposase IS5075 Transposase
IFO96_RS24310 () 77454..77630 - 177 WP_000954592.1 Arm DNA-binding domain-containing protein -
IFO96_RS24315 () 77960..78775 + 816 WP_001043260.1 Dihydropteroate synthase ARG
IFO96_RS24320 () 78836..79639 + 804 WP_001082320.1 Aminoglycoside 3'-phosphotransferase ARG
IFO96_RS24325 () 79639..80475 + 837 WP_000480972.1 hypothetical protein ARG
IFO96_RS24330 () 80706..81566 - 861 WP_000027057.1 Beta-lactamase TEM ARG
IFO96_RS24335 () 81749..82306 - 558 WP_001235713.1 Tn3 family transposase TnpR_Tn3 Transposase
IFO96_RS24340 () 82470..85475 + 3006 WP_001531602.1 Tn3 family transposase TnpA_Tn3 Transposase
IFO96_RS24345 () 85408..85873 - 466 Protein_73 incFII family plasmid replication initiator RepA -
IFO96_RS24350 () 85866..86348 - 483 WP_001273588.1 hypothetical protein -
IFO96_RS24355 () 86341..86415 - 75 WP_001442103.1 RepA leader peptide Tap -
IFO96_RS24360 () 86647..86904 - 258 WP_000083845.1 replication regulatory protein RepA -
IFO96_RS24365 () 87188..87394 - 207 WP_001351576.1 type I toxin-antitoxin system Hok family toxin Toxin Detail
- () 87381..87442 + 62 NuclAT_1 - -
- () 87381..87442 + 62 NuclAT_1 - -
- () 87381..87442 + 62 NuclAT_1 - -
- () 87381..87442 + 62 NuclAT_1 - -
IFO96_RS24370 () 87698..87772 - 75 Protein_78 endonuclease -
IFO96_RS24375 () 88018..88230 - 213 WP_001299730.1 ANR family transcriptional regulator -
IFO96_RS24380 () 88366..88926 - 561 WP_000139315.1 fertility inhibition protein FinO -
IFO96_RS24385 () 89029..89889 - 861 WP_000704513.1 putative protein YcjY VF
IFO96_RS24390 () 89948..90694 - 747 WP_000205749.1 conjugal transfer pilus acetylase TraX -
IFO96_RS24395 () 90714..95984 - 5271 WP_000986963.1 Multifunctional conjugation protein TraI Relaxase
IFO96_RS24400 () 96066..96293 + 228 WP_000450520.1 toxin-antitoxin system antitoxin VapB Antitoxin Detail
IFO96_RS24405 () 96293..96691 + 399 WP_000911313.1 tRNA(fMet)-specific endonuclease VapC Toxin Detail
IFO96_RS24410 () 96700..98853 - 2154 WP_000009324.1 type IV conjugative transfer system coupling protein TraD -
IFO96_RS24415 () 99106..99837 - 732 WP_021499552.1 complement resistance protein TraT -
IFO96_RS24420 () 99869..100366 - 498 WP_000605857.1 entry exclusion protein -
IFO96_RS24425 () 100382..103204 - 2823 WP_001007018.1 conjugal transfer mating pair stabilization protein TraG -
IFO96_RS24430 () 103201..104574 - 1374 WP_021536211.1 conjugal transfer protein TraH -
IFO96_RS24435 () 104574..104987 - 414 WP_001324104.1 F-type conjugal transfer protein TrbF -
IFO96_RS24440 () 104941..105282 - 342 WP_001443031.1 P-type conjugative transfer protein TrbJ -
IFO96_RS24445 () 105212..105757 - 546 WP_000059851.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
IFO96_RS24450 () 105744..106028 - 285 WP_000624109.1 type-F conjugative transfer system pilin chaperone TraQ -
IFO96_RS24455 () 106109..106423 + 315 WP_001324103.1 hypothetical protein -
IFO96_RS24460 () 106425..106772 - 348 WP_001287910.1 conjugal transfer protein TrbA -
IFO96_RS24465 () 106788..107531 - 744 WP_001030377.1 type-F conjugative transfer system pilin assembly protein TraF -
IFO96_RS24470 () 107524..107781 - 258 WP_000864318.1 conjugal transfer protein TrbE -
IFO96_RS24475 () 108003..108428 + 426 WP_000422741.1 IS66 family transposase ISEc23 Transposase
IFO96_RS24480 () 108425..108775 + 351 WP_001565133.1 IS66 family transposase ISEc47 Transposase
IFO96_RS24485 () 108806..110419 + 1614 WP_047063389.1 IS66 family transposase ISEc23 Transposase
IFO96_RS24490 () 110450..112156 - 1707 Protein_102 type-F conjugative transfer system mating-pair stabilization protein TraN -
IFO96_RS24495 () 112153..112791 - 639 WP_000777695.1 type-F conjugative transfer system pilin assembly protein TrbC -
IFO96_RS24500 () 112800..113792 - 993 WP_000830839.1 conjugal transfer pilus assembly protein TraU -
IFO96_RS24505 () 113789..114421 - 633 WP_001203720.1 type-F conjugative transfer system protein TraW -
IFO96_RS24510 () 114418..114804 - 387 WP_192301386.1 type-F conjugative transfer system protein TrbI -
IFO96_RS24515 () 114801..117428 - 2628 WP_001064245.1 type IV secretion system protein TraC -
IFO96_RS24520 () 117588..117809 - 222 WP_001278692.1 conjugal transfer protein TraR -
IFO96_RS24525 () 117944..118459 - 516 WP_000809902.1 type IV conjugative transfer system lipoprotein TraV -
IFO96_RS24530 () 118456..118707 - 252 WP_001038341.1 conjugal transfer protein TrbG -
IFO96_RS24535 () 118719..118949 - 231 WP_001352845.1 conjugal transfer protein TrbD -
IFO96_RS24540 () 118903..119493 - 591 WP_000002778.1 conjugal transfer protein TraP -
IFO96_RS24545 () 119483..120910 - 1428 WP_167731963.1 conjugal transfer protein TraB -
IFO96_RS24550 () 120910..121614 - 705 WP_072095570.1 type-F conjugative transfer system secretin TraK -
IFO96_RS24555 () 121625..122191 - 567 WP_000399794.1 type IV conjugative transfer system protein TraE -
IFO96_RS24560 () 122213..122524 - 312 WP_000012106.1 type IV conjugative transfer system protein TraL -
IFO96_RS24565 () 122539..122904 - 366 WP_000340282.1 type IV conjugative transfer system pilin TraA -
IFO96_RS24570 () 122947..123162 - 216 WP_001352842.1 conjugal transfer relaxosome protein TraY -
IFO96_RS24575 () 123298..123945 - 648 WP_000332520.1 conjugal transfer transcriptional regulator TraJ -
IFO96_RS24580 () 124137..124520 - 384 WP_001063020.1 relaxosome protein TraM -
IFO96_RS24585 () 124860..125462 + 603 WP_192301387.1 hypothetical protein VF
IFO96_RS24590 () 125757..126578 - 822 WP_001234475.1 DUF945 domain-containing protein -
IFO96_RS24595 () 126697..126984 - 288 WP_000107546.1 hypothetical protein -
IFO96_RS24600 () 127009..127215 - 207 WP_000547965.1 hypothetical protein -
IFO96_RS24605 () 127285..127640 + 356 Protein_125 hypothetical protein -
IFO96_RS24610 () 127877..128035 - 159 WP_001302184.1 type I toxin-antitoxin system Hok family toxin Toxin Detail
- () 128100..128297 - 198 NuclAT_0 - -
- () 128100..128297 - 198 NuclAT_0 - -
- () 128100..128297 - 198 NuclAT_0 - -
- () 128100..128297 - 198 NuclAT_0 - -
IFO96_RS24615 () 128268..129029 - 762 Protein_127 plasmid SOS inhibition protein A -
IFO96_RS24620 () 129026..129452 - 427 Protein_128 conjugation system SOS inhibitor PsiB -
IFO96_RS24625 () 129507..131465 - 1959 WP_029487628.1 ParB/RepB/Spo0J family partition protein -
IFO96_RS24630 () 131531..131764 - 234 WP_000005990.1 DUF905 family protein -
IFO96_RS24635 () 131821..132360 - 540 WP_000290801.1 single-stranded DNA-binding protein -
IFO96_RS24640 () 132678..133184 + 507 Protein_132 hypothetical protein -
IFO96_RS24645 () 133154..133344 - 191 Protein_133 hypothetical protein -
IFO96_RS24650 () 133341..133763 - 423 WP_192301388.1 DUF1380 family protein -
IFO96_RS24655 () 133810..134112 - 303 WP_072148062.1 antirestriction protein -
IFO96_RS24660 () 134648..135424 - 777 WP_001005035.1 hypothetical protein -
IFO96_RS24665 () 135470..136024 - 555 WP_077248347.1 DUF1380 family protein -
IFO96_RS24670 () 135918..136139 - 222 WP_001104870.1 hypothetical protein -
IFO96_RS24675 () 136140..136823 - 684 WP_000085939.1 DNA methylase -
IFO96_RS24680 () 136900..137205 - 306 WP_010891292.1 hypothetical protein -
IFO96_RS24685 () 137209..138110 - 902 Protein_141 DUF1281 domain-containing protein -
IFO96_RS24690 () 139020..139991 - 972 WP_000817035.1 ParB/RepB/Spo0J family plasmid partition protein -
IFO96_RS24695 () 139991..141157 - 1167 WP_000772446.1 Sporulation initiation inhibitor protein Soj VF
IFO96_RS24700 () 141745..142500 - 756 WP_000852146.1 replication initiation protein RepE -
IFO96_RS24705 () 143252..144058 - 807 WP_000016982.1 site-specific integrase -
IFO96_RS24710 () 144059..144364 - 306 WP_001159868.1 type II toxin-antitoxin system toxin CcdB Toxin Detail
IFO96_RS24715 () 144366..144584 - 219 WP_000813634.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin Detail
IFO96_RS24720 () 145152..145664 + 513 WP_000151784.1 hypothetical protein -
IFO96_RS24725 () 145698..146138 - 441 Protein_149 hypothetical protein -
IFO96_RS24730 () 146176..147389 + 1214 WP_085947772.1 IS3 family transposase ISCfr6 Transposase
IFO96_RS24735 () 147388..148092 - 705 Protein_151 hypothetical protein -
IFO96_RS24740 () 148259..149032 - 774 WP_000905949.1 hypothetical protein -
IFO96_RS24745 () 149045..149545 - 501 WP_000528932.1 hypothetical protein -
IFO96_RS24750 () 149810..150040 + 231 WP_001261278.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin Detail
IFO96_RS24755 () 150037..150453 + 417 WP_001034046.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
IFO96_RS24760 () 150498..154292 - 3795 WP_001144731.1 hypothetical protein -
IFO96_RS24765 () 154673..154903 + 231 WP_001261286.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin Detail
IFO96_RS24770 () 154900..155316 + 417 WP_001034044.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
IFO96_RS24775 () 155391..156956 + 1566 WP_001128474.1 AAA family ATPase -
IFO96_RS24780 () 156941..157963 + 1023 WP_000361402.1 helicase UvrD -
IFO96_RS24785 () 158217..158914 - 698 Protein_161 IS1 family transposase IS1S Transposase
IFO96_RS24790 () 159294..161495 - 2202 WP_000973519.1 Ferric aerobactin receptor VF
IFO96_RS24795 () 161577..162854 - 1278 WP_000750130.1 L-lysine N6-monooxygenase VF
IFO96_RS24800 () 162851..164593 - 1743 WP_001015721.1 Aerobactin synthase VF
IFO96_RS24805 () 164593..165540 - 948 WP_000011908.1 N(6)-hydroxylysine O-acetyltransferase VF
IFO96_RS24810 () 165541..167265 - 1725 WP_000602863.1 N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase VF
IFO96_RS24815 () 167401..168594 + 1194 WP_000095526.1 MFS transporter -
IFO96_RS24820 () 168974..169354 - 381 WP_001318207.1 fluoride efflux transporter CrcB -
IFO96_RS24825 () 169695..170108 - 414 Protein_169 phosphopyruvate hydratase -
IFO96_RS24830 () 170597..171454 - 858 WP_000968139.1 Manganese transport system membrane protein MntB ARG
IFO96_RS24835 () 171451..172308 - 858 WP_001101723.1 Manganese transport system membrane protein MntB ARG
IFO96_RS24840 () 172305..173132 - 828 WP_000983710.1 Iron(3+)-hydroxamate import ATP-binding protein FhuC VF
IFO96_RS24845 () 173132..174046 - 915 WP_000949004.1 Putative metal ABC transporter substrate-binding protein Hpf VF
IFO96_RS24850 () 174402..175099 + 698 Protein_174 IS1 family transposase IS1S Transposase
IFO96_RS24855 () 175279..175803 - 525 Protein_175 DUF4113 domain-containing protein -
IFO96_RS24860 () 175864..175968 - 105 Protein_176 AAA family ATPase -
IFO96_RS24865 () 175970..176293 - 324 Protein_177 IS21 family transposase IS21 Transposase

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance