MGE detailed information
MGE type: Prophage MGE length: 57898 bp
Accession: NZ_CP061349 Location: 1541657..1599554 Organism: Staphylococcus aureus strain MSSA01 Replicon: chromosome
Accession: NZ_CP061349 Location: 1541657..1599554 Organism: Staphylococcus aureus strain MSSA01 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IC588_RS07355 () | 1537396..1537644 | + | 249 | WP_001151997.1 | ferredoxin | - |
| IC588_RS07360 () | 1537750..1538295 | - | 546 | WP_001186912.1 | ECF transporter S component | - |
| IC588_RS07365 () | 1538697..1539629 | - | 933 | WP_000476341.1 | DUF1672 domain-containing protein | - |
| IC588_RS07370 () | 1539686..1540603 | - | 918 | WP_000476338.1 | DUF1672 domain-containing protein | - |
| IC588_RS07375 () | 1540661..1541566 | - | 906 | WP_000476867.1 | DUF1672 domain-containing protein | - |
| IC588_RS07380 () | 1541657..1541872 | - | 216 | WP_000126130.1 | hypothetical protein | - |
| IC588_RS07385 () | 1542594..1544048 | - | 1455 | WP_000909213.1 | N-acetylmuramoyl-L-alanine amidase | - |
| IC588_RS07390 () | 1544059..1544361 | - | 303 | WP_196584228.1 | phage holin | - |
| IC588_RS07395 () | 1544497..1544796 | - | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| IC588_RS07400 () | 1544842..1545006 | - | 165 | WP_000916020.1 | XkdX family protein | - |
| IC588_RS07405 () | 1544999..1545388 | - | 390 | WP_196584229.1 | DUF2977 domain-containing protein | - |
| IC588_RS07410 () | 1545388..1546854 | - | 1467 | WP_000067127.1 | BppU family phage baseplate upper protein | - |
| IC588_RS07415 () | 1546854..1548764 | - | 1911 | WP_000429558.1 | minor structural protein | - |
| IC588_RS07420 () | 1548780..1549070 | - | 291 | WP_000179858.1 | hypothetical protein | - |
| IC588_RS07425 () | 1549070..1550653 | - | 1584 | WP_001668972.1 | prophage endopeptidase tail family protein | - |
| IC588_RS07430 () | 1550662..1551486 | - | 825 | WP_001190530.1 | phage tail family protein | - |
| IC588_RS07435 () | 1551486..1557662 | - | 6177 | WP_001003416.1 | phage tail tape measure protein | - |
| IC588_RS07440 () | 1557676..1557834 | - | 159 | WP_000438833.1 | hypothetical protein | - |
| IC588_RS07445 () | 1557876..1558226 | - | 351 | WP_000589167.1 | hypothetical protein | - |
| IC588_RS07450 () | 1558284..1558739 | - | 456 | WP_000169127.1 | Ig domain-containing protein | - |
| IC588_RS07455 () | 1558831..1559472 | - | 642 | WP_000807536.1 | tail protein | - |
| IC588_RS07460 () | 1559507..1559902 | - | 396 | WP_001023806.1 | DUF3168 domain-containing protein | - |
| IC588_RS07465 () | 1559903..1560304 | - | 402 | WP_000110023.1 | hypothetical protein | - |
| IC588_RS07470 () | 1560301..1560633 | - | 333 | WP_000395498.1 | hypothetical protein | - |
| IC588_RS07475 () | 1560645..1560923 | - | 279 | WP_000050973.1 | head-tail connector protein | - |
| IC588_RS07480 () | 1560992..1562155 | - | 1164 | WP_001142734.1 | phage major capsid protein | - |
| IC588_RS07485 () | 1562167..1562940 | - | 774 | WP_000061866.1 | Clp protease ClpP | - |
| IC588_RS07490 () | 1562924..1564162 | - | 1239 | WP_001100669.1 | phage portal protein | - |
| IC588_RS07495 () | 1564167..1565858 | - | 1692 | WP_000153555.1 | terminase large subunit | - |
| IC588_RS07500 () | 1565848..1566153 | - | 306 | WP_000778932.1 | P27 family phage terminase small subunit | - |
| IC588_RS07505 () | 1566282..1566596 | - | 315 | WP_000160689.1 | HNH endonuclease | - |
| IC588_RS07510 () | 1566753..1567190 | - | 438 | WP_000513699.1 | transcriptional regulator | - |
| IC588_RS07515 () | 1567203..1568570 | - | 1368 | WP_001793488.1 | DEAD/DEAH box helicase | - |
| IC588_RS07520 () | 1568551..1568841 | - | 291 | WP_000665205.1 | VRR-NUC domain-containing protein | - |
| IC588_RS07525 () | 1568975..1569079 | + | 105 | WP_001802079.1 | hypothetical protein | - |
| IC588_RS07530 () | 1569182..1571629 | - | 2448 | WP_000884844.1 | virulence-associated E family protein | - |
| IC588_RS07535 () | 1571681..1571881 | - | 201 | WP_000265258.1 | DUF1514 family protein | - |
| IC588_RS07540 () | 1571949..1572101 | - | 153 | WP_000595272.1 | transcriptional activator RinB | - |
| IC588_RS07545 () | 1572098..1572304 | - | 207 | WP_111743877.1 | DUF1381 domain-containing protein | - |
| IC588_RS07550 () | 1572341..1572874 | - | 534 | WP_001061838.1 | dUTP diphosphatase | - |
| IC588_RS07555 () | 1572889..1573050 | - | 162 | WP_000889684.1 | hypothetical protein | - |
| IC588_RS07560 () | 1573051..1573224 | - | 174 | WP_000028424.1 | hypothetical protein | Antitoxin Detail |
| IC588_RS07565 () | 1573214..1573465 | - | 252 | WP_001065046.1 | DUF1024 family protein | Toxin Detail |
| IC588_RS07570 () | 1573458..1573869 | - | 412 | Protein_1485 | acetyltransferase | - |
| IC588_RS07575 () | 1573866..1574375 | - | 510 | WP_088811208.1 | hypothetical protein | - |
| IC588_RS07580 () | 1574372..1574779 | - | 408 | WP_088811209.1 | hypothetical protein | - |
| IC588_RS07585 () | 1574776..1575186 | - | 411 | WP_196584230.1 | hypothetical protein | - |
| IC588_RS07590 () | 1575200..1575448 | - | 249 | WP_196584231.1 | hypothetical protein | - |
| IC588_RS07595 () | 1575457..1575657 | - | 201 | WP_000235326.1 | hypothetical protein | - |
| IC588_RS07600 () | 1575660..1575917 | - | 258 | WP_000022728.1 | DUF3310 domain-containing protein | - |
| IC588_RS07605 () | 1575917..1576276 | - | 360 | WP_000029382.1 | hypothetical protein | - |
| IC588_RS07610 () | 1576277..1576462 | - | 186 | WP_001187249.1 | DUF3113 family protein | - |
| IC588_RS07615 () | 1576462..1576617 | - | 156 | WP_000152769.1 | hypothetical protein | - |
| IC588_RS07620 () | 1576629..1578581 | - | 1953 | WP_075345100.1 | DNA polymerase | - |
| IC588_RS07625 () | 1578650..1579207 | - | 558 | WP_000645045.1 | DUF2815 family protein | - |
| IC588_RS07630 () | 1579233..1580399 | - | 1167 | WP_000762546.1 | DUF2800 domain-containing protein | - |
| IC588_RS07635 () | 1580396..1580758 | - | 363 | WP_000985976.1 | hypothetical protein | - |
| IC588_RS07640 () | 1580773..1581096 | - | 324 | WP_000174994.1 | hypothetical protein | - |
| IC588_RS07645 () | 1581175..1581336 | - | 162 | WP_001285948.1 | DUF1270 domain-containing protein | - |
| IC588_RS07650 () | 1581349..1581612 | - | 264 | WP_001124198.1 | helix-turn-helix domain-containing protein | - |
| IC588_RS07655 () | 1581639..1581854 | - | 216 | WP_001097552.1 | hypothetical protein | - |
| IC588_RS07660 () | 1581909..1582274 | + | 366 | WP_001128433.1 | hypothetical protein | Antitoxin Detail |
| IC588_RS07665 () | 1582243..1582488 | - | 246 | WP_001025401.1 | DUF2829 domain-containing protein | Toxin Detail |
| IC588_RS07670 () | 1582555..1582935 | + | 381 | WP_196584232.1 | DUF2513 domain-containing protein | - |
| IC588_RS07675 () | 1582922..1583119 | - | 198 | WP_001148860.1 | hypothetical protein | - |
| IC588_RS07680 () | 1583189..1583401 | + | 213 | WP_000362643.1 | hypothetical protein | - |
| IC588_RS07685 () | 1583442..1583591 | - | 150 | WP_000771849.1 | hypothetical protein | - |
| IC588_RS07690 () | 1583606..1584049 | - | 444 | WP_000435357.1 | hypothetical protein | - |
| IC588_RS07695 () | 1584097..1584309 | - | 213 | WP_000213811.1 | helix-turn-helix transcriptional regulator | - |
| IC588_RS07700 () | 1584461..1585192 | + | 732 | WP_000511090.1 | XRE family transcriptional regulator | - |
| IC588_RS07705 () | 1585263..1585445 | + | 183 | WP_000705240.1 | hypothetical protein | - |
| IC588_RS07710 () | 1585483..1585629 | + | 147 | WP_001794606.1 | hypothetical protein | - |
| IC588_RS07715 () | 1585626..1586240 | - | 615 | WP_031901849.1 | hypothetical protein | - |
| IC588_RS07720 () | 1586366..1587571 | + | 1206 | WP_000264747.1 | Transposase from transposon Tn916 ; Integrase | Integrase |
| IC588_RS07725 () | 1587614..1589641 | - | 2028 | WP_001793477.1 | hypothetical protein | - |
| IC588_RS07730 () | 1589653..1590561 | - | 909 | WP_001641538.1 | DUF1672 domain-containing protein | - |
| IC588_RS07735 () | 1590806..1592557 | - | 1752 | WP_000987769.1 | two-component system sensor histidine kinase SrrB | - |
| IC588_RS07740 () | 1592538..1593263 | - | 726 | WP_000064078.1 | Transcriptional regulatory protein SrrA | VF |
| IC588_RS07745 () | 1593396..1594133 | - | 738 | WP_000159577.1 | rRNA pseudouridine synthase | - |
| IC588_RS07750 () | 1594126..1594668 | - | 543 | WP_000368654.1 | SMC-Scp complex subunit ScpB | - |
| IC588_RS07755 () | 1594661..1595392 | - | 732 | WP_000273371.1 | segregation/condensation protein A | - |
| IC588_RS07760 () | 1595484..1595990 | + | 507 | WP_001183429.1 | DUF309 domain-containing protein | - |
| IC588_RS07765 () | 1596068..1596955 | - | 888 | WP_000447733.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| IC588_RS07770 () | 1597004..1597453 | - | 450 | WP_000392691.1 | transcriptional repressor | - |
| IC588_RS07775 () | 1597558..1598100 | - | 543 | WP_000365246.1 | NUDIX hydrolase | - |
| IC588_RS07780 () | 1598182..1599090 | + | 909 | WP_001171339.1 | aldo/keto reductase | - |
| IC588_RS07785 () | 1599306..1599554 | - | 249 | WP_000995804.1 | hypothetical protein | - |
| IC588_RS07790 () | 1599570..1600325 | - | 756 | WP_000678235.1 | SDR family oxidoreductase | - |
| IC588_RS07795 () | 1600467..1601279 | + | 813 | WP_000779750.1 | pyrroline-5-carboxylate reductase | - |
| IC588_RS07800 () | 1601389..1602309 | - | 921 | WP_000454066.1 | ribonuclease Z | - |
| IC588_RS07805 () | 1602622..1604106 | + | 1485 | WP_000105070.1 | glucose-6-phosphate dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|