MGE detailed information
MGE type: Prophage MGE length: 54789 bp
Accession: NZ_CP060708 Location: 1599254..1654042 Organism: Escherichia coli strain MFDpir Replicon: chromosome
Accession: NZ_CP060708 Location: 1599254..1654042 Organism: Escherichia coli strain MFDpir Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9446_RS07740 () | 1595357..1596343 | - | 987 | Protein_1509 | GGDEF domain-containing protein | - |
| H9446_RS07745 () | 1596416..1596775 | - | 360 | WP_001191027.1 | DUF4186 domain-containing protein | - |
| H9446_RS07750 () | 1596775..1597701 | - | 927 | WP_000257409.1 | glutaminase B | - |
| H9446_RS07755 () | 1597765..1599153 | - | 1389 | WP_000156615.1 | succinate-semialdehyde dehydrogenase | - |
| H9446_RS07760 () | 1599254..1600135 | + | 882 | WP_000366501.1 | hypothetical protein | VF |
| H9446_RS07765 () | 1600213..1601328 | + | 1116 | WP_000258599.1 | putative protein YneK | - |
| H9446_RS07770 () | 1601478..1602668 | + | 1191 | WP_000210799.1 | L-arabinose MFS transporter | - |
| H9446_RS07775 () | 1602693..1603358 | - | 666 | WP_000885033.1 | NAAT family transporter MarC | - |
| H9446_RS07780 () | 1603570..1604004 | + | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
| H9446_RS07785 () | 1604024..1604407 | + | 384 | WP_000091199.1 | hypothetical protein | VF |
| H9446_RS07790 () | 1604439..1604657 | + | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| H9446_RS07795 () | 1604688..1605587 | - | 900 | WP_000087187.1 | O-acetylserine/cysteine exporter | - |
| H9446_RS07800 () | 1605782..1606969 | + | 1188 | WP_001054204.1 | efflux MFS transporter YdeE | - |
| H9446_RS07805 () | 1607096..1607191 | + | 96 | WP_000901367.1 | protein MgtS | - |
| H9446_RS07810 () | 1607410..1608300 | - | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| H9446_RS07815 () | 1608555..1608947 | - | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| H9446_RS07820 () | 1609223..1609741 | + | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| H9446_RS07825 () | 1609785..1611830 | - | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| H9446_RS07830 () | 1611967..1612713 | + | 747 | WP_000636571.1 | hypothetical protein | VF |
| H9446_RS07835 () | 1612802..1613488 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| H9446_RS07840 () | 1613665..1613868 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| H9446_RS07845 () | 1613903..1615363 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| H9446_RS07850 () | 1615452..1616819 | - | 1368 | Protein_1531 | MHS family MFS transporter | - |
| H9446_RS07855 () | 1617340..1617453 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| H9446_RS07860 () | 1617522..1617755 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| H9446_RS07865 () | 1618072..1618662 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| H9446_RS07870 () | 1618760..1619335 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| H9446_RS07875 () | 1619335..1620297 | - | 963 | WP_001027733.1 | phage tail protein | - |
| H9446_RS07880 () | 1620248..1620817 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| H9446_RS07885 () | 1621206..1621439 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| H9446_RS07890 () | 1621497..1621907 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| H9446_RS07895 () | 1622059..1622232 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| H9446_RS07900 () | 1622404..1622559 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| H9446_RS07905 () | 1622638..1622703 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| H9446_RS07910 () | 1622706..1622894 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| H9446_RS07915 () | 1622905..1623117 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| H9446_RS07920 () | 1623480..1623977 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| H9446_RS07925 () | 1623974..1624507 | - | 534 | WP_001092971.1 | lysozyme | - |
| H9446_RS07930 () | 1624504..1624815 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| H9446_RS07935 () | 1624820..1625035 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| H9446_RS07940 () | 1625789..1626004 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| H9446_RS07945 () | 1626305..1626517 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| H9446_RS07950 () | 1626572..1626661 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| H9446_RS07955 () | 1626939..1627691 | - | 753 | WP_001047135.1 | antitermination protein | - |
| H9446_RS07960 () | 1627705..1628754 | - | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| H9446_RS07965 () | 1628756..1629034 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| H9446_RS07970 () | 1629101..1629352 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| H9446_RS07975 () | 1629569..1629724 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| H9446_RS07980 () | 1629796..1630083 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| H9446_RS07985 () | 1630083..1630322 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| H9446_RS07990 () | 1630347..1630652 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| H9446_RS07995 () | 1630855..1631187 | + | 333 | WP_001301033.1 | protein FlxA | - |
| H9446_RS08000 () | 1631624..1631773 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| H9446_RS08005 () | 1631808..1632086 | - | 279 | Protein_1562 | hypothetical protein | - |
| H9446_RS08010 () | 1632070..1632300 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| H9446_RS08015 () | 1632384..1632791 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| H9446_RS08020 () | 1632958..1633113 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| H9446_RS08025 () | 1633273..1633491 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| H9446_RS08030 () | 1634059..1634247 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| H9446_RS08035 () | 1634244..1634435 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| H9446_RS08040 () | 1634528..1635295 | + | 768 | Protein_1569 | exonuclease | - |
| H9446_RS08045 () | 1635292..1635987 | + | 696 | Protein_1570 | IS3 family transposase IS2 | Transposase |
| H9446_RS08050 () | 1636001..1637158 | + | 1158 | Protein_1571 | hypothetical protein ; Integrase | Integrase |
| H9446_RS08055 () | 1637178..1637288 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| H9446_RS08060 () | 1637346..1638365 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| H9446_RS08065 () | 1638377..1639591 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| H9446_RS08070 () | 1639797..1640123 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| H9446_RS08075 () | 1640258..1640599 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| H9446_RS08080 () | 1640634..1641194 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| H9446_RS08085 () | 1641197..1641907 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| H9446_RS08090 () | 1642015..1642320 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| H9446_RS08095 () | 1642519..1644945 | + | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| H9446_RS08100 () | 1645006..1647429 | + | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| H9446_RS08105 () | 1647440..1648057 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| H9446_RS08110 () | 1648059..1648913 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| H9446_RS08115 () | 1648956..1649570 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| H9446_RS08120 () | 1649729..1651021 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| H9446_RS08125 () | 1650974..1651669 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| H9446_RS08130 () | 1651794..1653014 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| H9446_RS08135 () | 1653149..1654042 | - | 894 | WP_001019525.1 | hypothetical protein | VF |
| H9446_RS08140 () | 1654149..1655402 | + | 1254 | WP_000091840.1 | MFS transporter | - |
| H9446_RS08145 () | 1655799..1656134 | + | 336 | WP_000743957.1 | acid resistance repetitive basic protein Asr | - |
| H9446_RS08150 () | 1656227..1656310 | + | 84 | WP_000233093.1 | stationary phase-induced protein | - |
| H9446_RS08155 () | 1656410..1657231 | + | 822 | WP_001260865.1 | serine protease | - |
| H9446_RS08160 () | 1657270..1657599 | - | 330 | WP_000046661.1 | multidrug/spermidine efflux SMR transporter subunit MdtI | - |
| H9446_RS08165 () | 1657586..1657951 | - | 366 | WP_000276149.1 | multidrug/spermidine efflux SMR transporter subunit MdtJ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli C | Prophage | TA75071 | NZ_CP020543 | 2249542..2301270 | 0.009 |