MGE detailed information
MGE type: Genomic_island MGE length: 10611 bp
Accession: NZ_CP060674 Location: 3416567..3427177 Organism: Salmonella enterica strain 190729_4 Replicon: chromosome
Accession: NZ_CP060674 Location: 3416567..3427177 Organism: Salmonella enterica strain 190729_4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9Q84_RS16670 (3412507) | 3412507..3412962 | + | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| H9Q84_RS16675 (3413104) | 3413104..3414333 | + | 1230 | WP_000036838.1 | amino acid permease | - |
| H9Q84_RS16680 (3414364) | 3414364..3414636 | - | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| H9Q84_RS16685 (3414758) | 3414758..3415612 | + | 855 | WP_000503685.1 | nickel/cobalt efflux protein RcnA | - |
| H9Q84_RS16690 (3415822) | 3415822..3416580 | - | 759 | WP_000134802.1 | transcriptional regulator | - |
| H9Q84_RS16695 (3416567) | 3416567..3417079 | - | 513 | WP_000336257.1 | CaiF/GrlA family transcriptional regulator | - |
| H9Q84_RS16700 (3417223) | 3417223..3418299 | - | 1077 | WP_000141330.1 | hypothetical protein | - |
| H9Q84_RS16705 (3418296) | 3418296..3419039 | - | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| H9Q84_RS16710 (3419080) | 3419080..3421563 | - | 2484 | WP_000705505.1 | Outer membrane usher protein PapC | VF |
| H9Q84_RS16715 (3421683) | 3421683..3422264 | - | 582 | WP_001244651.1 | putative fimbrial-like protein YbgD | VF |
| H9Q84_RS16720 (3422983) | 3422983..3423615 | - | 633 | WP_000835265.1 | YfdX family protein | - |
| H9Q84_RS16725 (3423662) | 3423662..3424198 | - | 537 | WP_001038502.1 | Attachment invasion locus protein | VF |
| H9Q84_RS16730 (3425006) | 3425006..3425404 | - | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| H9Q84_RS16735 (3425404) | 3425404..3425631 | - | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| H9Q84_RS16740 (3425840) | 3425840..3426091 | + | 252 | WP_001576352.1 | hypothetical protein | - |
| H9Q84_RS16745 (3426371) | 3426371..3427177 | + | 807 | WP_001574939.1 | DUF1460 domain-containing protein | - |
| H9Q84_RS16755 (3427462) | 3427462..3428220 | - | 759 | WP_000244328.1 | amidase activator ActS | - |
| H9Q84_RS16760 (3428485) | 3428485..3429030 | + | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| H9Q84_RS16765 (3429106) | 3429106..3430623 | - | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.009 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.009 |