MGE detailed information
MGE type: Genomic_island MGE length: 32155 bp
Accession: NZ_CP060446 Location: 2878491..2910645 Organism: Xanthomonas citri pv. citri strain DAR72029 Replicon: chromosome
Accession: NZ_CP060446 Location: 2878491..2910645 Organism: Xanthomonas citri pv. citri strain DAR72029 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H8Z73_RS12555 () | 2874561..2875652 | + | 1092 | WP_011051565.1 | ribonuclease D | - |
| H8Z73_RS12560 () | 2875857..2878475 | - | 2619 | WP_015472106.1 | DNA ligase D | - |
| H8Z73_RS12565 () | 2878491..2878667 | - | 177 | WP_011051567.1 | DUF3606 domain-containing protein | - |
| H8Z73_RS12570 () | 2878887..2879288 | + | 402 | WP_003485983.1 | H-NS histone family protein | - |
| H8Z73_RS12580 () | 2879577..2880668 | + | 1092 | WP_040152493.1 | hypothetical protein ; Integrase | Integrase |
| H8Z73_RS12585 () | 2881561..2883732 | + | 2172 | WP_011051569.1 | DotA/TraY family protein | - |
| H8Z73_RS12590 () | 2883742..2884263 | + | 522 | WP_011051570.1 | hypothetical protein | - |
| H8Z73_RS12595 () | 2885128..2886084 | - | 957 | WP_011051571.1 | hypothetical protein | - |
| H8Z73_RS12600 () | 2886151..2887284 | - | 1134 | Protein_2456 | IS5 family transposase ISXo4 | Transposase |
| H8Z73_RS12605 () | 2887324..2888411 | - | 1088 | Protein_2457 | IS3 family transposase ISXcd1 | Transposase |
| H8Z73_RS12610 () | 2888624..2888803 | - | 180 | WP_015463309.1 | hypothetical protein | - |
| H8Z73_RS12615 () | 2889074..2889388 | - | 315 | WP_015463310.1 | hypothetical protein | - |
| H8Z73_RS12620 () | 2889391..2889681 | - | 291 | WP_011051576.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| H8Z73_RS12625 () | 2889669..2889947 | - | 279 | WP_004541313.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| H8Z73_RS12630 () | 2890117..2891385 | - | 1269 | Protein_2462 | Tn3 family transposase ISPsy42 | Transposase |
| H8Z73_RS12635 () | 2891434..2892659 | + | 1226 | Protein_2463 | IS3 family transposase ISJsp1 | Transposase |
| H8Z73_RS12640 () | 2893278..2894234 | + | 957 | WP_197707729.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| H8Z73_RS12645 () | 2894424..2896532 | + | 2109 | WP_015472116.1 | AAA family ATPase | - |
| H8Z73_RS12650 () | 2896583..2896771 | + | 189 | WP_011051582.1 | hypothetical protein | - |
| H8Z73_RS12655 () | 2896768..2898354 | + | 1587 | WP_011051583.1 | N-6 DNA methylase | - |
| H8Z73_RS12660 () | 2898351..2899268 | + | 918 | WP_011051584.1 | XamI family restriction endonuclease | - |
| H8Z73_RS12665 () | 2899277..2899606 | + | 330 | WP_015463316.1 | hypothetical protein | - |
| H8Z73_RS12670 () | 2899710..2900124 | + | 415 | Protein_2470 | plasmid pRiA4b ORF-3 family protein | - |
| H8Z73_RS12675 () | 2900147..2900479 | - | 333 | WP_203165057.1 | hypothetical protein | - |
| H8Z73_RS12680 () | 2900523..2900744 | + | 222 | Protein_2472 | IS4 family transposase ISXac1 | Transposase |
| H8Z73_RS12690 () | 2901938..2902936 | + | 999 | Protein_2474 | IS4 family transposase ISXac1 | Transposase |
| H8Z73_RS12695 () | 2903075..2903275 | - | 201 | WP_011051587.1 | ribbon-helix-helix protein, CopG family | - |
| H8Z73_RS12700 () | 2903836..2904096 | + | 261 | WP_015463320.1 | hypothetical protein | - |
| H8Z73_RS12705 () | 2904495..2905496 | - | 1002 | WP_011051588.1 | replication protein | - |
| H8Z73_RS12710 () | 2905729..2905962 | + | 234 | WP_040107635.1 | hypothetical protein | - |
| H8Z73_RS12715 () | 2906541..2907935 | + | 1395 | WP_011051590.1 | SIR2 family protein | - |
| H8Z73_RS12720 () | 2907932..2910049 | + | 2118 | WP_040152522.1 | ATP-binding protein | - |
| H8Z73_RS12725 () | 2910469..2910645 | + | 177 | WP_003485979.1 | hypothetical protein | - |
| H8Z73_RS12730 () | 2910928..2912034 | + | 1107 | WP_016849926.1 | diguanylate cyclase | - |
| H8Z73_RS12735 () | 2912077..2912586 | - | 510 | WP_011051594.1 | chemotaxis protein CheW | - |
| H8Z73_RS12740 () | 2912598..2914256 | - | 1659 | WP_203208778.1 | MCP four helix bundle domain-containing protein | - |
| H8Z73_RS12745 () | 2914567..2915172 | + | 606 | WP_170914521.1 | DNA-3-methyladenine glycosylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xanthomonas axonopodis pv. citri str. 306 | Genomic island | TA20720 | NC_003919 | 2820490..2847010 | 0.007 |