MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 120965 bp
Accession: NZ_CP060089 Location: 1..120965 Organism: Vibrio parahaemolyticus strain TJA114 Replicon: plasmid p114-1
Accession: NZ_CP060089 Location: 1..120965 Organism: Vibrio parahaemolyticus strain TJA114 Replicon: plasmid p114-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H5404_RS24475 () | 370..753 | + | 384 | WP_185215532.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| H5404_RS24480 () | 753..3481 | + | 2729 | Protein_2 | conjugative transfer ATPase | - |
| H5404_RS24485 () | 3478..4419 | + | 942 | WP_086482451.1 | TIGR03756 family integrating conjugative element protein | - |
| H5404_RS24490 () | 4485..5732 | + | 1248 | WP_170927767.1 | integrating conjugative element protein | - |
| H5404_RS24495 () | 5742..6017 | + | 276 | WP_086482452.1 | hypothetical protein | - |
| H5404_RS24500 () | 6008..7588 | + | 1581 | WP_086482453.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| H5404_RS24505 () | 7617..7862 | - | 246 | WP_086482454.1 | hypothetical protein | - |
| H5404_RS24510 () | 7951..8268 | - | 318 | WP_086482455.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| H5404_RS24515 () | 8280..8567 | - | 288 | WP_086482456.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| H5404_RS24520 () | 8734..9285 | - | 552 | WP_086482457.1 | DUF5384 family protein | - |
| H5404_RS24525 () | 9291..9797 | - | 507 | WP_086482458.1 | hypothetical protein | - |
| H5404_RS24530 () | 9955..10548 | + | 594 | WP_086482459.1 | hypothetical protein | - |
| H5404_RS24535 () | 10824..12167 | + | 1344 | WP_086482460.1 | outer membrane protein transport protein | - |
| H5404_RS24540 () | 12504..12695 | + | 192 | WP_086482461.1 | hypothetical protein | - |
| H5404_RS24545 () | 13257..13976 | + | 720 | WP_086482462.1 | carbonic anhydrase family protein | - |
| H5404_RS24550 () | 14226..14690 | + | 465 | WP_086482463.1 | MAPEG family protein | - |
| H5404_RS24555 () | 14902..16821 | + | 1920 | WP_086482464.1 | metallophosphoesterase | - |
| H5404_RS24560 () | 16985..17359 | - | 375 | WP_086482465.1 | hypothetical protein | - |
| H5404_RS24565 () | 17624..18367 | + | 744 | WP_086482503.1 | prolyl oligopeptidase family serine peptidase | - |
| H5404_RS24570 () | 18431..18931 | - | 501 | WP_086482466.1 | hypothetical protein | - |
| H5404_RS24575 () | 19334..19522 | + | 189 | WP_086482467.1 | hypothetical protein | - |
| H5404_RS24580 () | 19605..20000 | + | 396 | WP_086482468.1 | hypothetical protein | - |
| H5404_RS24585 () | 19993..20241 | + | 249 | WP_086482469.1 | hypothetical protein | - |
| H5404_RS24590 () | 20308..20826 | + | 519 | WP_086482470.1 | DNA repair protein RadC | - |
| H5404_RS24595 () | 20896..21486 | + | 591 | WP_086482471.1 | DUF3275 family protein | - |
| H5404_RS24600 () | 21486..22577 | + | 1092 | WP_086482472.1 | SAM-dependent methyltransferase | - |
| H5404_RS24605 () | 22684..23253 | + | 570 | WP_086482473.1 | hypothetical protein | - |
| H5404_RS24610 () | 23253..25529 | + | 2277 | WP_086482474.1 | helicase | - |
| H5404_RS24615 () | 25608..25955 | + | 348 | WP_086482475.1 | hypothetical protein | - |
| H5404_RS24620 () | 26019..26513 | + | 495 | Protein_30 | hypothetical protein | - |
| H5404_RS24625 () | 26510..26713 | + | 204 | WP_140049095.1 | hypothetical protein | - |
| H5404_RS24630 () | 26748..26945 | + | 198 | WP_086482476.1 | hypothetical protein | - |
| H5404_RS24635 () | 27065..28321 | + | 1257 | WP_086482477.1 | ParA family protein | - |
| H5404_RS24640 () | 28324..29298 | + | 975 | WP_086482478.1 | hypothetical protein | - |
| H5404_RS24645 () | 29486..30532 | - | 1047 | WP_170927765.1 | replication initiation protein | - |
| H5404_RS24650 () | 31012..31335 | - | 324 | WP_159408542.1 | helix-turn-helix domain-containing protein | - |
| H5404_RS24655 () | 32417..34255 | + | 1839 | WP_159408543.1 | hypothetical protein | Relaxase |
| H5404_RS24660 () | 34255..34818 | + | 564 | WP_086482482.1 | DUF2857 family protein | - |
| H5404_RS24665 () | 34793..35464 | + | 672 | WP_086482483.1 | TIGR03761 family integrating conjugative element protein | - |
| H5404_RS24670 () | 35457..36437 | + | 981 | WP_086482484.1 | hypothetical protein | - |
| H5404_RS24675 () | 37246..37626 | + | 381 | WP_086482485.1 | hypothetical protein | - |
| H5404_RS24680 () | 37852..38589 | + | 738 | WP_086482486.1 | hypothetical protein | - |
| H5404_RS24685 () | 38722..39000 | + | 279 | WP_086482487.1 | hypothetical protein | - |
| H5404_RS24690 () | 39011..40012 | + | 1002 | WP_086482488.1 | nucleoid-associated protein YejK | - |
| H5404_RS24695 () | 40017..41000 | + | 984 | WP_086482489.1 | hypothetical protein | - |
| H5404_RS24700 () | 41034..41285 | + | 252 | WP_086482490.1 | hypothetical protein | - |
| H5404_RS24705 () | 41595..41834 | + | 240 | WP_086482492.1 | hypothetical protein | - |
| H5404_RS24710 () | 42096..43550 | + | 1455 | WP_086482493.1 | SIR2 family protein | - |
| H5404_RS24715 () | 44039..44596 | - | 558 | WP_031419876.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| H5404_RS24720 () | 44754..46619 | + | 1866 | Protein_50 | Tn3 family transposase ISEc63 | Transposase |
| H5404_RS24725 () | 46596..46829 | - | 234 | WP_140220071.1 | recombinase family protein | - |
| H5404_RS24730 () | 46985..47197 | + | 213 | WP_140220072.1 | hypothetical protein | - |
| H5404_RS24735 () | 47277..47711 | + | 435 | WP_140220074.1 | hypothetical protein | - |
| H5404_RS24740 () | 47874..48638 | - | 765 | WP_140220076.1 | IS3 family transposase ISAs9 | Transposase |
| H5404_RS24745 () | 48762..49445 | + | 684 | WP_140220078.1 | IS6 family transposase ISSba18 | Transposase |
| H5404_RS24750 () | 49475..49744 | - | 270 | WP_140220080.1 | IS110 family transposase ISMlo3 | Transposase |
| H5404_RS24755 () | 50262..50531 | - | 270 | WP_140220082.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| H5404_RS24760 () | 50524..50778 | - | 255 | WP_005526636.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| H5404_RS24765 () | 51263..51514 | + | 252 | Protein_59 | hypothetical protein | - |
| H5404_RS24770 () | 51517..51804 | + | 288 | WP_140220084.1 | helix-turn-helix domain-containing protein | - |
| H5404_RS24775 () | 52530..53630 | + | 1101 | WP_140220086.1 | Outer membrane protein A | VF |
| H5404_RS24780 () | 53647..57030 | + | 3384 | WP_140220088.1 | Ig-like domain-containing protein | - |
| H5404_RS24785 () | 57804..58406 | + | 603 | WP_086370940.1 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| H5404_RS24790 () | 58563..58799 | + | 237 | WP_108745471.1 | transcription factor | - |
| H5404_RS24795 () | 58809..60338 | + | 1530 | WP_108745470.1 | site-specific DNA-methyltransferase | - |
| H5404_RS24800 () | 60354..63056 | + | 2703 | WP_108745522.1 | DEAD/DEAH box helicase family protein | - |
| H5404_RS24805 () | 63319..63930 | - | 612 | WP_086370891.1 | mobile mystery protein B | - |
| H5404_RS24810 () | 63927..64415 | - | 489 | WP_086370892.1 | mobile mystery protein A | - |
| H5404_RS24815 () | 64871..65482 | + | 612 | WP_140220090.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| H5404_RS24820 () | 65539..65787 | + | 249 | WP_185215527.1 | hypothetical protein | - |
| H5404_RS24825 () | 66245..67099 | + | 855 | WP_159408561.1 | GAF domain-containing protein | - |
| H5404_RS24830 () | 67101..67532 | + | 432 | WP_140220094.1 | hypothetical protein | - |
| H5404_RS24835 () | 67646..67909 | - | 264 | WP_140220096.1 | DUF1496 domain-containing protein | - |
| H5404_RS24840 () | 68212..71214 | - | 3003 | WP_185215528.1 | Tn3 family transposase ISEc63 | Transposase |
| H5404_RS24845 () | 71372..71929 | + | 558 | WP_031419876.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| H5404_RS24850 () | 72465..73070 | + | 606 | WP_086482494.1 | TIR domain-containing protein | - |
| H5404_RS24855 () | 73112..73747 | - | 636 | WP_086482495.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| H5404_RS24860 () | 74934..75335 | - | 402 | WP_086482396.1 | H-NS histone family protein | - |
| H5404_RS24865 () | 75565..78228 | + | 2664 | WP_086482397.1 | S-type pyocin domain-containing protein | - |
| H5404_RS24870 () | 78218..78469 | + | 252 | WP_086482398.1 | bacteriocin immunity protein | - |
| H5404_RS24875 () | 79269..79721 | - | 453 | WP_086482399.1 | hypothetical protein | - |
| H5404_RS24880 () | 79725..80519 | - | 795 | WP_140049099.1 | hypothetical protein | - |
| H5404_RS24885 () | 80837..81151 | + | 315 | WP_140049098.1 | hypothetical protein | - |
| H5404_RS24890 () | 81290..82225 | + | 936 | WP_086482401.1 | DNA-binding protein | - |
| H5404_RS24895 () | 82443..82607 | + | 165 | WP_086482402.1 | type I toxin-antitoxin system Hok family toxin | - |
| H5404_RS24900 () | 82682..83620 | - | 939 | WP_086482403.1 | integrase | - |
| H5404_RS24905 () | 83592..83879 | - | 288 | WP_086482404.1 | hypothetical protein | - |
| H5404_RS24910 () | 84662..85105 | + | 444 | WP_086482406.1 | single-stranded DNA-binding protein | - |
| H5404_RS24915 () | 85120..85356 | + | 237 | WP_086482407.1 | hypothetical protein | - |
| H5404_RS24920 () | 85353..85736 | + | 384 | WP_086482408.1 | hypothetical protein | - |
| H5404_RS24925 () | 85736..87880 | + | 2145 | WP_086482409.1 | DNA topoisomerase III | - |
| H5404_RS24930 () | 87913..88107 | + | 195 | WP_185215530.1 | hypothetical protein | - |
| H5404_RS24935 () | 88182..88799 | + | 618 | WP_086482411.1 | hypothetical protein | - |
| H5404_RS24940 () | 88942..89172 | + | 231 | WP_086482497.1 | hypothetical protein | - |
| H5404_RS24945 () | 89187..89837 | + | 651 | WP_086482412.1 | hypothetical protein | - |
| H5404_RS24950 () | 89834..91522 | + | 1689 | WP_086482413.1 | PcfJ domain-containing protein | - |
| H5404_RS24955 () | 91617..92144 | + | 528 | WP_086482414.1 | DUF2726 domain-containing protein | - |
| H5404_RS24960 () | 92663..93364 | + | 702 | WP_086482415.1 | DNA alkylation repair protein | - |
| H5404_RS24965 () | 93425..93661 | + | 237 | WP_140049097.1 | hypothetical protein | - |
| H5404_RS24970 () | 93964..94398 | + | 435 | WP_086482416.1 | DUF3577 domain-containing protein | - |
| H5404_RS24975 () | 94514..95005 | + | 492 | WP_086482417.1 | hypothetical protein | - |
| H5404_RS24980 () | 95112..95456 | + | 345 | WP_086482418.1 | hypothetical protein | - |
| H5404_RS24985 () | 95551..95805 | + | 255 | WP_086482419.1 | hypothetical protein | - |
| H5404_RS24990 () | 95922..97265 | + | 1344 | WP_086482420.1 | DNA sulfur modification protein DndB | - |
| H5404_RS24995 () | 97352..98254 | + | 903 | WP_086482421.1 | DUF1281 domain-containing protein | - |
| H5404_RS25000 () | 98256..98552 | + | 297 | WP_086482422.1 | hypothetical protein | - |
| H5404_RS25005 () | 98759..100009 | + | 1251 | WP_086482423.1 | hypothetical protein | VF |
| H5404_RS25010 () | 100012..101496 | + | 1485 | WP_086482498.1 | hypothetical protein | VF |
| H5404_RS25015 () | 101496..102662 | + | 1167 | WP_086482424.1 | hypothetical protein | - |
| H5404_RS25020 () | 102659..103297 | + | 639 | WP_086482425.1 | hypothetical protein | - |
| H5404_RS25025 () | 103294..104913 | + | 1620 | WP_086482426.1 | Flp pilus assembly complex ATPase component TadA | - |
| H5404_RS25030 () | 104910..105914 | + | 1005 | WP_086482427.1 | hypothetical protein | - |
| H5404_RS25035 () | 105928..106512 | + | 585 | WP_086482428.1 | hypothetical protein | - |
| H5404_RS25040 () | 106512..107039 | + | 528 | WP_086482429.1 | hypothetical protein | - |
| H5404_RS25045 () | 107036..107989 | + | 954 | WP_086482430.1 | type II secretion system GspH family protein | - |
| H5404_RS25050 () | 108003..108422 | + | 420 | WP_086482431.1 | hypothetical protein | - |
| H5404_RS25055 () | 108527..109558 | + | 1032 | WP_086482432.1 | trypsin-like serine protease | - |
| H5404_RS25060 () | 109647..109874 | + | 228 | WP_086482433.1 | hypothetical protein | - |
| H5404_RS25065 () | 109999..110274 | + | 276 | WP_086482434.1 | HU family DNA-binding protein | - |
| H5404_RS25070 () | 110497..111204 | + | 708 | WP_086482435.1 | hypothetical protein | - |
| H5404_RS25075 () | 111234..111893 | + | 660 | WP_086482499.1 | TIGR03759 family integrating conjugative element protein | - |
| H5404_RS25080 () | 111869..112390 | + | 522 | WP_086482436.1 | hypothetical protein | - |
| H5404_RS25085 () | 112387..112782 | + | 396 | WP_086482437.1 | integrating conjugative element protein | - |
| H5404_RS25090 () | 112811..113047 | + | 237 | WP_086482438.1 | hypothetical protein | - |
| H5404_RS25095 () | 113031..113225 | + | 195 | WP_086482439.1 | hypothetical protein | - |
| H5404_RS25100 () | 113226..115388 | + | 2163 | WP_086482440.1 | type IV conjugative transfer system coupling protein TraD | - |
| H5404_RS25105 () | 115482..116135 | + | 654 | WP_086482441.1 | DUF4400 domain-containing protein | - |
| H5404_RS25110 () | 116333..116644 | + | 312 | WP_170927764.1 | RAQPRD family integrative conjugative element protein | - |
| H5404_RS25115 () | 116637..116879 | + | 243 | WP_086482442.1 | TIGR03758 family integrating conjugative element protein | - |
| H5404_RS25120 () | 116876..117208 | + | 333 | WP_086482443.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| H5404_RS25125 () | 117208..117546 | + | 339 | WP_086482444.1 | DUF3487 family protein | - |
| H5404_RS25130 () | 117557..117961 | + | 405 | WP_086482445.1 | hypothetical protein | - |
| H5404_RS25135 () | 117958..118308 | + | 351 | WP_086482446.1 | hypothetical protein | - |
| H5404_RS25140 () | 118305..118973 | + | 669 | WP_086482447.1 | TIGR03746 family integrating conjugative element protein | - |
| H5404_RS25145 () | 118970..119839 | + | 870 | WP_086482448.1 | TIGR03749 family integrating conjugative element protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|