MGE detailed information
MGE type: Prophage MGE length: 62066 bp
Accession: NZ_CP058644 Location: 6285909..6347974 Organism: Pseudomonas yamanorum strain GZD14026 Replicon: chromosome
Accession: NZ_CP058644 Location: 6285909..6347974 Organism: Pseudomonas yamanorum strain GZD14026 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZF02_RS29080 () | 6283586..6284926 | + | 1341 | WP_169356655.1 | peptidylprolyl isomerase | - |
| HZF02_RS29085 () | 6284923..6285912 | + | 990 | WP_179448289.1 | 4-hydroxythreonine-4-phosphate dehydrogenase PdxA | - |
| HZF02_RS29090 () | 6285909..6286721 | + | 813 | WP_155584447.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
| HZF02_RS29095 () | 6286828..6287208 | + | 381 | WP_155584448.1 | Co2+/Mg2+ efflux protein ApaG | - |
| HZF02_RS29100 () | 6287210..6288061 | + | 852 | WP_179448290.1 | symmetrical bis(5'-nucleosyl)-tetraphosphatase | - |
| HZF02_RS29105 () | 6288094..6288423 | + | 330 | WP_155584450.1 | thiosulfate sulfurtransferase GlpE | - |
| HZF02_RS29110 () | 6288709..6290631 | + | 1923 | WP_155584451.1 | PrkA family serine protein kinase | - |
| HZF02_RS29115 () | 6290769..6292040 | + | 1272 | WP_155584452.1 | YeaH/YhbH family protein | - |
| HZF02_RS29120 () | 6292037..6293599 | + | 1563 | WP_155584453.1 | SpoVR family protein | - |
| HZF02_RS29125 () | 6293663..6294892 | + | 1230 | WP_179448291.1 | multifunctional CCA addition/repair protein | - |
| HZF02_RS29130 () | 6294902..6295420 | - | 519 | WP_179448292.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| HZF02_RS29135 () | 6295411..6295764 | - | 354 | WP_179448293.1 | dihydroneopterin aldolase | - |
| HZF02_RS29140 () | 6295839..6296408 | + | 570 | WP_155584456.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| HZF02_RS29145 () | 6296442..6297467 | - | 1026 | WP_155584457.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| HZF02_RS29150 () | 6297671..6297886 | + | 216 | WP_002551877.1 | 30S ribosomal protein S21 | - |
| HZF02_RS29155 () | 6298348..6300309 | + | 1962 | WP_155584458.1 | DNA primase | - |
| HZF02_RS29160 () | 6300377..6302227 | + | 1851 | WP_155584459.1 | RNA polymerase sigma factor RpoD | - |
| HZF02_RS29165 () | 6302350..6305721 | + | 3372 | WP_179448294.1 | putative signaling protein | VF |
| HZF02_RS29175 () | 6305856..6306926 | - | 1071 | WP_179448295.1 | IS91 family transposase ISTha3 | Transposase |
| HZF02_RS29180 () | 6306930..6307166 | - | 237 | WP_179448296.1 | helix-turn-helix domain-containing protein | - |
| HZF02_RS29185 () | 6307166..6307408 | - | 243 | WP_179448297.1 | helix-turn-helix domain-containing protein | - |
| HZF02_RS29190 () | 6307512..6307745 | + | 234 | WP_179448298.1 | hypothetical protein | - |
| HZF02_RS29195 () | 6307758..6310427 | + | 2670 | WP_179448299.1 | toprim domain-containing protein | - |
| HZF02_RS29200 () | 6310852..6311031 | + | 180 | WP_179448300.1 | hypothetical protein | - |
| HZF02_RS29205 () | 6311046..6311339 | + | 294 | WP_179448301.1 | hypothetical protein | - |
| HZF02_RS29210 () | 6311418..6311603 | + | 186 | WP_179448302.1 | hypothetical protein | - |
| HZF02_RS29215 () | 6311665..6311946 | + | 282 | WP_179448303.1 | hypothetical protein | - |
| HZF02_RS29220 () | 6311939..6312373 | + | 435 | WP_179448304.1 | DUF2528 family protein | - |
| HZF02_RS29225 () | 6312366..6312512 | + | 147 | WP_179448305.1 | Arc family DNA-binding protein | - |
| HZF02_RS29230 () | 6312524..6313552 | - | 1029 | WP_179446807.1 | IS30 family transposase ISPfl2 | Transposase |
| HZF02_RS29235 () | 6313747..6314001 | + | 255 | WP_179448306.1 | hypothetical protein | - |
| HZF02_RS29240 () | 6314281..6314493 | + | 213 | WP_179448307.1 | hypothetical protein | - |
| HZF02_RS29245 () | 6314466..6314723 | - | 258 | WP_170058919.1 | ogr/Delta-like zinc finger family protein | - |
| HZF02_RS29250 () | 6315579..6317624 | - | 2046 | WP_179448308.1 | terminase family protein | - |
| HZF02_RS29255 () | 6317787..6318692 | + | 906 | WP_179448309.1 | GPO family capsid scaffolding protein | - |
| HZF02_RS29260 () | 6318694..6319731 | + | 1038 | WP_179448310.1 | phage major capsid protein, P2 family | - |
| HZF02_RS29265 () | 6319728..6320450 | + | 723 | WP_179448311.1 | terminase | - |
| HZF02_RS29270 () | 6320548..6321009 | + | 462 | WP_179448312.1 | head completion/stabilization protein | - |
| HZF02_RS29275 () | 6321006..6321491 | + | 486 | WP_179448313.1 | hypothetical protein | - |
| HZF02_RS29280 () | 6321488..6321937 | + | 450 | WP_179448314.1 | phage tail protein | - |
| HZF02_RS29285 () | 6321927..6322607 | + | 681 | WP_179448315.1 | phage virion morphogenesis protein | - |
| HZF02_RS29290 () | 6322619..6323746 | + | 1128 | WP_179448316.1 | DUF2586 family protein | - |
| HZF02_RS29295 () | 6323753..6324202 | + | 450 | WP_179448317.1 | DUF2597 family protein | - |
| HZF02_RS29300 () | 6324202..6324414 | + | 213 | WP_179448318.1 | TraR/DksA family transcriptional regulator | - |
| HZF02_RS29305 () | 6324411..6324617 | + | 207 | WP_179448319.1 | hypothetical protein | - |
| HZF02_RS29310 () | 6324614..6325147 | + | 534 | WP_179448320.1 | lysozyme | - |
| HZF02_RS29315 () | 6325147..6325644 | + | 498 | WP_179448321.1 | lysis system i-spanin subunit Rz | - |
| HZF02_RS29320 () | 6325641..6325928 | + | 288 | WP_179448322.1 | putative phage tail assembly chaperone | - |
| HZF02_RS29325 () | 6326099..6328495 | + | 2397 | WP_179448323.1 | phage tail tape measure protein | - |
| HZF02_RS29330 () | 6328492..6328809 | + | 318 | WP_179448324.1 | DUF2590 family protein | - |
| HZF02_RS29335 () | 6328806..6329978 | + | 1173 | WP_179448325.1 | baseplate J/gp47 family protein | - |
| HZF02_RS29340 () | 6329975..6330499 | + | 525 | WP_179447819.1 | phage tail protein | - |
| HZF02_RS29345 () | 6330508..6332850 | + | 2343 | WP_179448326.1 | phage tail protein | - |
| HZF02_RS29350 () | 6332934..6333356 | + | 423 | WP_179451255.1 | hypothetical protein | - |
| HZF02_RS29355 () | 6333346..6334275 | + | 930 | WP_179448327.1 | hypothetical protein | - |
| HZF02_RS29360 () | 6334272..6334817 | + | 546 | WP_179448328.1 | DNA-binding protein | - |
| HZF02_RS29365 () | 6334814..6335518 | + | 705 | WP_179448329.1 | hypothetical protein | - |
| HZF02_RS29370 () | 6335491..6336462 | + | 972 | WP_179448330.1 | hypothetical protein | - |
| HZF02_RS29375 () | 6336470..6337489 | - | 1020 | WP_179451257.1 | acyltransferase | - |
| HZF02_RS29380 () | 6337631..6337924 | - | 294 | WP_124369841.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| HZF02_RS29385 () | 6337924..6338238 | - | 315 | WP_179448331.1 | hypothetical protein | Toxin Detail |
| HZF02_RS29390 () | 6338328..6338675 | - | 348 | WP_179448332.1 | hypothetical protein | - |
| HZF02_RS29395 () | 6339181..6340347 | - | 1167 | WP_179448333.1 | hypothetical protein | - |
| HZF02_RS29400 () | 6340344..6340925 | - | 582 | WP_179448334.1 | LemA family protein | - |
| HZF02_RS29405 () | 6341054..6341521 | + | 468 | WP_179448335.1 | hypothetical protein | - |
| HZF02_RS29410 () | 6341659..6342309 | - | 651 | Protein_5793 | AarF/ABC1/UbiB kinase family protein | - |
| HZF02_RS29415 () | 6342365..6343393 | + | 1029 | WP_179446807.1 | IS30 family transposase ISPfl2 | Transposase |
| HZF02_RS29420 () | 6343431..6344417 | - | 987 | Protein_5795 | AarF/ABC1/UbiB kinase family protein | - |
| HZF02_RS29425 () | 6344529..6345833 | - | 1305 | WP_179448336.1 | amidase | - |
| HZF02_RS29430 () | 6345844..6346269 | - | 426 | WP_155584466.1 | VOC family protein | - |
| HZF02_RS29435 () | 6346383..6347255 | + | 873 | WP_179448337.1 | HTH-type transcriptional activator CmpR | VF |
| HZF02_RS29440 () | 6347334..6347735 | - | 402 | WP_155584468.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| HZF02_RS29445 () | 6347792..6347974 | - | 183 | WP_155584469.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| HZF02_RS29450 () | 6348210..6350570 | - | 2361 | WP_179448338.1 | glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase | - |
| HZF02_RS29455 () | 6350767..6351678 | + | 912 | WP_179448339.1 | sugar ABC transporter substrate-binding protein | - |
| HZF02_RS29460 () | 6351728..6352210 | + | 483 | WP_155584472.1 | Lrp/AsnC family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|