MGE detailed information
MGE type: Conjugative plasmid MGE length: 88999 bp
Accession: NZ_CP058357 Location: 1..88999 Organism: Escherichia coli strain AMSCJX03 Replicon: plasmid pAMPD2
Accession: NZ_CP058357 Location: 1..88999 Organism: Escherichia coli strain AMSCJX03 Replicon: plasmid pAMPD2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS77_RS22715 () | 1026..1184 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 1228..1452 | - | 225 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1228..1452 | - | 225 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1228..1452 | - | 225 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1228..1452 | - | 225 | NuclAT_1 | - | Antitoxin Detail |
| HXS77_RS22720 () | 1421..2182 | - | 762 | Protein_1 | plasmid SOS inhibition protein A | - |
| HXS77_RS22725 () | 2179..2613 | - | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| HXS77_RS22730 () | 2668..4628 | - | 1961 | Protein_3 | ParB/RepB/Spo0J family partition protein | - |
| HXS77_RS22735 () | 4695..4928 | - | 234 | Protein_4 | DUF905 family protein | - |
| HXS77_RS22740 () | 4991..5444 | - | 454 | Protein_5 | single-stranded DNA-binding protein | - |
| HXS77_RS22745 () | 6174..6401 | - | 228 | WP_001825119.1 | hypothetical protein | - |
| HXS77_RS22750 () | 6427..6990 | - | 564 | WP_001315564.1 | class I SAM-dependent methyltransferase | - |
| HXS77_RS22755 () | 7038..8399 | - | 1362 | WP_000170715.1 | DUF3560 domain-containing protein | - |
| HXS77_RS22760 () | 8451..8681 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| HXS77_RS22765 () | 9716..9907 | - | 192 | WP_039021874.1 | hypothetical protein | - |
| HXS77_RS22770 () | 9904..10326 | - | 423 | WP_000271684.1 | DUF1380 family protein | - |
| HXS77_RS22775 () | 10373..10675 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| HXS77_RS22780 () | 11158..11928 | - | 771 | WP_001006207.1 | hypothetical protein | - |
| HXS77_RS22785 () | 11973..12407 | - | 435 | WP_000274504.1 | DUF1380 family protein | - |
| HXS77_RS22790 () | 12420..12641 | - | 222 | WP_001104902.1 | hypothetical protein | - |
| HXS77_RS22795 () | 12642..13325 | - | 684 | WP_000085889.1 | DNA methylase | - |
| HXS77_RS22800 () | 13402..13710 | - | 309 | WP_039021875.1 | hypothetical protein | - |
| HXS77_RS22805 () | 13842..14804 | + | 963 | WP_000959875.1 | plasmid segregation protein ParM | - |
| HXS77_RS22810 () | 14807..15157 | + | 351 | WP_001430247.1 | plasmid partitioning/stability family protein | - |
| HXS77_RS22815 () | 15266..15728 | + | 463 | Protein_20 | hypothetical protein | - |
| HXS77_RS22820 () | 15953..16954 | - | 1002 | WP_000138753.1 | DUF4238 domain-containing protein | - |
| HXS77_RS22825 () | 17257..19932 | + | 2676 | WP_015059139.1 | hypothetical protein | - |
| HXS77_RS22830 () | 20104..20271 | + | 168 | WP_001430249.1 | hypothetical protein | - |
| HXS77_RS22835 () | 20278..20447 | - | 170 | Protein_24 | resolvase | - |
| HXS77_RS22840 () | 20443..21327 | - | 885 | WP_001345827.1 | hypothetical protein | - |
| HXS77_RS22845 () | 21396..22910 | - | 1515 | Protein_26 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| HXS77_RS22850 () | 22976..23680 | + | 705 | WP_127762863.1 | IS6 family transposase IS26 | Transposase |
| HXS77_RS22855 () | 23824..24465 | - | 642 | WP_001011939.1 | Chloramphenicol acetyltransferase 2 | ARG |
| HXS77_RS22860 () | 24561..25265 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| HXS77_RS22865 () | 25320..25607 | + | 288 | Protein_30 | transposase | - |
| HXS77_RS22870 () | 25863..26738 | + | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| HXS77_RS22875 () | 26785..27117 | - | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| HXS77_RS22880 () | 27131..29926 | + | 2796 | Protein_33 | Tn3 family transposase TnpA_Tn3 | Transposase |
| HXS77_RS22885 () | 29961..30634 | - | 674 | Protein_34 | IS1 family transposase IS1R | Transposase |
| HXS77_RS22890 () | 30891..31163 | - | 273 | Protein_35 | IS1 family transposase IS1X2 | Transposase |
| HXS77_RS22895 () | 31287..32690 | + | 1404 | WP_072135327.1 | DNA cytosine methyltransferase | - |
| HXS77_RS22900 () | 32724..33938 | - | 1215 | WP_001532073.1 | type II site-specific deoxyribonuclease | - |
| HXS77_RS22905 () | 34335..35039 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| HXS77_RS22910 () | 35051..36211 | - | 1161 | WP_064148452.1 | DUF4238 domain-containing protein | - |
| HXS77_RS22915 () | 36241..37344 | - | 1104 | WP_001127573.1 | nucleotide-binding protein | - |
| HXS77_RS22920 () | 37673..37930 | + | 258 | WP_000371888.1 | hypothetical protein | - |
| HXS77_RS22925 () | 37930..38520 | + | 591 | WP_065800293.1 | hypothetical protein | - |
| HXS77_RS22930 () | 38785..40341 | + | 1557 | WP_001579759.1 | AAA family ATPase | - |
| HXS77_RS22935 () | 40536..41153 | + | 618 | WP_000521604.1 | hypothetical protein | - |
| HXS77_RS22940 () | 41212..42204 | - | 993 | WP_001579760.1 | hypothetical protein | - |
| HXS77_RS22945 () | 43120..43977 | - | 858 | WP_000130647.1 | incFII family plasmid replication initiator RepA | - |
| HXS77_RS22950 () | 43970..44044 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| HXS77_RS22955 () | 44282..44536 | - | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
| HXS77_RS22960 () | 44776..45366 | - | 591 | WP_000766816.1 | DUF2726 domain-containing protein | - |
| HXS77_RS22965 () | 45404..45613 | - | 210 | WP_001333231.1 | hemolysin expression modulator Hha | - |
| HXS77_RS22970 () | 45659..46120 | - | 462 | WP_015059120.1 | thermonuclease family protein | - |
| HXS77_RS22975 () | 46364..46576 | - | 213 | Protein_52 | ANR family transcriptional regulator | - |
| HXS77_RS22980 () | 47230..47907 | - | 678 | WP_000392235.1 | hypothetical protein | - |
| HXS77_RS22985 () | 48538..49098 | - | 561 | WP_000139341.1 | fertility inhibition protein FinO | - |
| HXS77_RS22990 () | 49153..49899 | - | 747 | WP_015059122.1 | conjugal transfer pilus acetylase TraX | - |
| HXS77_RS22995 () | 49919..55189 | - | 5271 | WP_015059123.1 | Multifunctional conjugation protein TraI | Relaxase |
| HXS77_RS23000 () | 55189..57405 | - | 2217 | WP_022630316.1 | type IV conjugative transfer system coupling protein TraD | - |
| HXS77_RS23005 () | 57658..58389 | - | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| HXS77_RS23010 () | 58403..58912 | - | 510 | WP_031943494.1 | conjugal transfer entry exclusion protein TraS | - |
| HXS77_RS23015 () | 58909..61734 | - | 2826 | WP_001007045.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HXS77_RS23020 () | 61731..63104 | - | 1374 | WP_065802015.1 | conjugal transfer protein TraH | - |
| HXS77_RS23025 () | 63104..63466 | - | 363 | WP_010379880.1 | P-type conjugative transfer protein TrbJ | - |
| HXS77_RS23030 () | 63396..63941 | - | 546 | WP_000059821.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HXS77_RS23035 () | 63928..64212 | - | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HXS77_RS23040 () | 64331..64678 | - | 348 | WP_001287891.1 | conjugal transfer protein TrbA | - |
| HXS77_RS23045 () | 64694..65437 | - | 744 | WP_001430248.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HXS77_RS23050 () | 65430..65687 | - | 258 | WP_000864352.1 | conjugal transfer protein TrbE | - |
| HXS77_RS23055 () | 65714..67522 | - | 1809 | WP_000821821.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HXS77_RS23060 () | 67519..68157 | - | 639 | WP_000777692.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HXS77_RS23065 () | 68166..69158 | - | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| HXS77_RS23070 () | 69155..69787 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| HXS77_RS23075 () | 69784..70170 | - | 387 | WP_000214092.1 | type-F conjugative transfer system protein TrbI | - |
| HXS77_RS23080 () | 70167..72797 | - | 2631 | WP_000069764.1 | type IV secretion system protein TraC | - |
| HXS77_RS23085 () | 72923..73285 | - | 363 | WP_000836675.1 | hypothetical protein | - |
| HXS77_RS23090 () | 73313..73527 | - | 215 | Protein_75 | hypothetical protein | - |
| HXS77_RS23095 () | 73607..74083 | - | 477 | WP_015059129.1 | hypothetical protein | - |
| HXS77_RS23100 () | 74076..74297 | - | 222 | WP_001278695.1 | conjugal transfer protein TraR | - |
| HXS77_RS23105 () | 74432..74947 | - | 516 | WP_015059130.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HXS77_RS23110 () | 74944..75195 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| HXS77_RS23115 () | 75188..75541 | - | 354 | WP_071594066.1 | conjugal transfer protein TrbD | - |
| HXS77_RS23120 () | 75495..76085 | - | 591 | WP_000002787.1 | conjugal transfer protein TraP | - |
| HXS77_RS23125 () | 76075..77502 | - | 1428 | WP_000146685.1 | conjugal transfer protein TraB | - |
| HXS77_RS23130 () | 77502..78206 | - | 705 | WP_148713163.1 | type-F conjugative transfer system secretin TraK | - |
| HXS77_RS23135 () | 78217..78783 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| HXS77_RS23140 () | 78805..79116 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| HXS77_RS23145 () | 79131..79490 | - | 360 | WP_000340272.1 | type IV conjugative transfer system pilin TraA | - |
| HXS77_RS23150 () | 79524..79751 | - | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| HXS77_RS23155 () | 79845..80531 | - | 687 | WP_000332484.1 | PAS domain-containing protein | - |
| HXS77_RS23160 () | 80722..81105 | - | 384 | WP_000124981.1 | relaxosome protein TraM | - |
| HXS77_RS23165 () | 81382..82029 | + | 648 | WP_031943493.1 | hypothetical protein | VF |
| HXS77_RS23170 () | 82326..83147 | - | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| HXS77_RS23175 () | 83265..83552 | - | 288 | WP_000107544.1 | hypothetical protein | - |
| HXS77_RS23180 () | 84474..84632 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 84676..84900 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 84676..84900 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 84676..84900 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 84676..84900 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| HXS77_RS23185 () | 84712..84900 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| HXS77_RS23190 () | 84912..85631 | - | 720 | WP_013362833.1 | plasmid SOS inhibition protein A | - |
| HXS77_RS23195 () | 85628..86062 | - | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| HXS77_RS23200 () | 86117..88075 | - | 1959 | WP_065800285.1 | ParB/RepB/Spo0J family partition protein | - |
| HXS77_RS23205 () | 88141..88374 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| HXS77_RS23210 () | 88437..88976 | - | 540 | WP_001825195.1 | single-stranded DNA-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|