MGE detailed information
MGE type: Conjugative plasmid MGE length: 116881 bp
Accession: NZ_CP058058 Location: 1..116881 Organism: Escherichia fergusonii strain RHB02-C22 Replicon: plasmid pRHB02-C22_2
Accession: NZ_CP058058 Location: 1..116881 Organism: Escherichia fergusonii strain RHB02-C22 Replicon: plasmid pRHB02-C22_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVV54_RS22695 () | 46..1077 | + | 1032 | WP_000907875.1 | replication initiation protein | - |
| HVV54_RS22700 () | 1773..1931 | + | 159 | WP_000841008.1 | hypothetical protein | - |
| HVV54_RS22705 () | 1986..2255 | + | 270 | WP_000079928.1 | hypothetical protein | Antitoxin Detail |
| HVV54_RS22710 () | 2252..2533 | + | 282 | WP_000969996.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HVV54_RS22715 () | 2573..3421 | + | 849 | WP_001057996.1 | 3'-5' exonuclease | - |
| HVV54_RS22720 () | 3739..4392 | + | 654 | Protein_5 | helix-turn-helix domain-containing protein | - |
| HVV54_RS22725 () | 4401..5261 | + | 861 | WP_000493383.1 | EamA family transporter | - |
| HVV54_RS22730 () | 5293..6492 | - | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| HVV54_RS22735 () | 6598..7248 | + | 651 | WP_181465513.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| HVV54_RS22740 () | 7280..7522 | - | 243 | WP_000844627.1 | transposase | - |
| HVV54_RS22745 () | 8394..9506 | + | 1113 | WP_001300563.1 | IS4 family transposase IS421 | Transposase |
| HVV54_RS22750 () | 9874..10308 | - | 435 | WP_000429836.1 | IS607 family transposase ISChh1 | Transposase |
| HVV54_RS22755 () | 10380..10730 | + | 351 | WP_001294663.1 | mercuric transport protein MerT | - |
| HVV54_RS22760 () | 10744..11019 | + | 276 | WP_000732292.1 | mercury resistance system periplasmic binding protein MerP | - |
| HVV54_RS22765 () | 11055..11477 | + | 423 | WP_001340589.1 | organomercurial transporter MerC | - |
| HVV54_RS22770 () | 11529..13223 | + | 1695 | WP_000105636.1 | mercury(II) reductase | - |
| HVV54_RS22775 () | 13241..13603 | + | 363 | WP_001277456.1 | mercury resistance co-regulator MerD | - |
| HVV54_RS22780 () | 13600..13836 | + | 237 | WP_000993386.1 | broad-spectrum mercury transporter MerE | - |
| HVV54_RS22785 () | 13872..14540 | + | 669 | WP_001300294.1 | putative signaling protein | VF |
| HVV54_RS22790 () | 14615..15865 | + | 1251 | Protein_19 | transposase | - |
| HVV54_RS22795 () | 15930..16634 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HVV54_RS22800 () | 16687..16869 | - | 183 | Protein_21 | EAL domain-containing protein | - |
| HVV54_RS22805 () | 17072..18085 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| HVV54_RS22810 () | 18252..19094 | + | 843 | WP_001456218.1 | alpha/beta fold putative hydrolase EstX | - |
| HVV54_RS22815 () | 19190..19798 | + | 609 | WP_000050382.1 | HAD-IB family hydrolase | - |
| HVV54_RS22820 () | 19856..20647 | + | 792 | WP_001261740.1 | Streptomycin 3''-adenylyltransferase | ARG |
| HVV54_RS22825 () | 20909..22168 | + | 1260 | WP_000095725.1 | Bicyclomycin resistance protein | ARG |
| HVV54_RS22830 () | 22261..23052 | + | 792 | WP_001206316.1 | Streptomycin 3''-adenylyltransferase | ARG |
| HVV54_RS22835 () | 23222..23554 | + | 333 | WP_000800531.1 | quaternary ammonium compound efflux SMR transporter QacL | - |
| HVV54_RS22840 () | 23819..24454 | - | 636 | Protein_29 | IS256 family transposase IS406 | Transposase |
| HVV54_RS22845 () | 24456..24731 | + | 276 | WP_109023896.1 | hypothetical protein | - |
| HVV54_RS22850 () | 24734..25525 | - | 792 | WP_000034420.1 | Dihydropteroate synthase | ARG |
| HVV54_RS22855 () | 25994..26239 | - | 246 | WP_001354008.1 | GrpB family protein | - |
| HVV54_RS22860 () | 26277..27140 | - | 864 | WP_000612791.1 | SDR family oxidoreductase | - |
| HVV54_RS22865 () | 27286..27810 | - | 525 | Protein_34 | MFS transporter | - |
| HVV54_RS22870 () | 27863..28567 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HVV54_RS22875 () | 28544..28767 | + | 224 | Protein_36 | Hin recombinase | - |
| HVV54_RS22880 () | 28770..31736 | + | 2967 | WP_001138064.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| HVV54_RS22885 () | 31745..32161 | + | 417 | WP_031610367.1 | hypothetical protein | - |
| HVV54_RS22890 () | 32638..32904 | - | 267 | WP_000627831.1 | hypothetical protein | - |
| HVV54_RS22895 () | 32904..33398 | - | 495 | WP_181465532.1 | hypothetical protein | - |
| HVV54_RS22900 () | 33454..34056 | - | 603 | WP_000517689.1 | hypothetical protein | - |
| HVV54_RS22905 () | 34410..35756 | + | 1347 | WP_001132019.1 | hypothetical protein | - |
| HVV54_RS22910 () | 36035..37915 | + | 1881 | WP_001283356.1 | colicin | - |
| HVV54_RS22915 () | 37933..38280 | - | 348 | WP_000762580.1 | hypothetical protein | - |
| HVV54_RS22920 () | 38399..38746 | + | 348 | WP_000142424.1 | hypothetical protein | - |
| HVV54_RS22925 () | 38764..39354 | - | 591 | WP_181465533.1 | hypothetical protein | - |
| HVV54_RS22930 () | 39351..39611 | - | 261 | WP_000343102.1 | hypothetical protein | - |
| HVV54_RS22935 () | 40180..40593 | + | 414 | WP_000465034.1 | hypothetical protein | - |
| HVV54_RS22940 () | 40595..41380 | + | 786 | WP_001164192.1 | site-specific integrase | - |
| HVV54_RS22945 () | 41964..42596 | + | 633 | WP_000312331.1 | ParA family protein | - |
| HVV54_RS22950 () | 42596..42970 | + | 375 | WP_000752652.1 | hypothetical protein | - |
| HVV54_RS22955 () | 43209..44183 | + | 975 | WP_001217836.1 | hypothetical protein | - |
| HVV54_RS22960 () | 44187..44579 | + | 393 | WP_000272884.1 | plasmid partitioning/stability family protein | - |
| HVV54_RS22965 () | 44714..44842 | - | 129 | Protein_54 | DinI family protein | - |
| HVV54_RS22970 () | 45260..46162 | + | 903 | WP_001348079.1 | DUF1281 domain-containing protein | - |
| HVV54_RS22975 () | 46159..46471 | + | 313 | Protein_56 | hypothetical protein | - |
| HVV54_RS22980 () | 46547..47230 | + | 684 | WP_000086147.1 | DNA methylase | - |
| HVV54_RS22985 () | 47231..47452 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| HVV54_RS22990 () | 47466..47900 | + | 435 | WP_000274500.1 | DUF1380 family protein | - |
| HVV54_RS22995 () | 47946..48722 | + | 777 | WP_001005043.1 | hypothetical protein | - |
| HVV54_RS23000 () | 49263..49565 | + | 303 | WP_014653258.1 | antirestriction protein | - |
| HVV54_RS23005 () | 49612..50034 | + | 423 | WP_000271705.1 | DUF1380 family protein | - |
| HVV54_RS23010 () | 50031..50222 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| HVV54_RS23015 () | 50293..50607 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| HVV54_RS23020 () | 50991..51518 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| HVV54_RS23025 () | 51576..51809 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| HVV54_RS23030 () | 51868..53826 | + | 1959 | WP_001145485.1 | ParB/RepB/Spo0J family partition protein | - |
| HVV54_RS23035 () | 53881..54315 | + | 435 | WP_001387500.1 | conjugation system SOS inhibitor PsiB | - |
| HVV54_RS23040 () | 54312..55031 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| HVV54_RS23045 () | 55028..55624 | + | 597 | WP_000977997.1 | hypothetical protein | - |
| HVV54_RS23050 () | 56086..56586 | + | 501 | WP_000117611.1 | antirestriction protein ArdA | - |
| HVV54_RS23055 () | 57315..57749 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| HVV54_RS23060 () | 57843..58109 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| HVV54_RS23065 () | 58174..59112 | + | 939 | WP_000078704.1 | Recombination-promoting nuclease RpnA | VF |
| HVV54_RS23070 () | 59135..59332 | + | 198 | WP_001348086.1 | hypothetical protein | - |
| HVV54_RS23075 () | 59363..59614 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| HVV54_RS23080 () | 59648..59845 | - | 198 | WP_001161115.1 | hypothetical protein | - |
| HVV54_RS23085 () | 60194..61042 | + | 849 | WP_001077023.1 | DUF4942 domain-containing protein | - |
| HVV54_RS23090 () | 61128..61463 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| HVV54_RS23095 () | 61696..62028 | + | 333 | WP_001281051.1 | hypothetical protein | - |
| HVV54_RS23100 () | 62039..64738 | + | 2700 | WP_001354015.1 | Protein TraI | Relaxase |
| HVV54_RS23105 () | 64775..67066 | - | 2292 | WP_001289276.1 | hypothetical protein | - |
| HVV54_RS23110 () | 67059..68129 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| HVV54_RS23115 () | 68148..69356 | - | 1209 | WP_181465534.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 69536..69593 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 69536..69593 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 69536..69593 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 69536..69593 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| HVV54_RS23120 () | 69648..69800 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| HVV54_RS23125 () | 69872..70123 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| HVV54_RS23130 () | 70423..70719 | + | 297 | WP_001275298.1 | hypothetical protein | - |
| HVV54_RS23135 () | 70784..70960 | - | 177 | WP_001054904.1 | hypothetical protein | - |
| HVV54_RS23140 () | 71352..71561 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| HVV54_RS23145 () | 71633..72295 | - | 663 | WP_000653334.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HVV54_RS23150 () | 72360..74522 | - | 2163 | WP_000698351.1 | DotA/TraY family protein | - |
| HVV54_RS23155 () | 74619..75203 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| HVV54_RS23160 () | 75232..76434 | - | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| HVV54_RS23165 () | 76401..77015 | - | 615 | WP_000337398.1 | IncI1-type conjugal transfer protein TraV | - |
| HVV54_RS23170 () | 77015..80059 | - | 3045 | WP_001024780.1 | IncI1-type conjugal transfer protein TraU | - |
| HVV54_RS23175 () | 80149..80949 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| HVV54_RS23180 () | 80933..81121 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| HVV54_RS23185 () | 81185..81589 | - | 405 | WP_000086957.1 | IncI1-type conjugal transfer protein TraR | - |
| HVV54_RS23190 () | 81640..82167 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| HVV54_RS23195 () | 82167..82871 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| HVV54_RS23200 () | 82871..84160 | - | 1290 | WP_001272005.1 | conjugal transfer protein TraO | - |
| HVV54_RS23205 () | 84163..85146 | - | 984 | WP_001191877.1 | hypothetical protein | VF |
| HVV54_RS23210 () | 85157..85849 | - | 693 | WP_000138548.1 | DotI/IcmL family type IV secretion protein | - |
| HVV54_RS23215 () | 85846..86193 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| HVV54_RS23220 () | 86211..89978 | - | 3768 | WP_001141529.1 | DNA primase | - |
| HVV54_RS23225 () | 90068..90619 | - | 552 | WP_000014583.1 | Phospholipase D | VF |
| HVV54_RS23230 () | 90634..90924 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| HVV54_RS23235 () | 90921..92069 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| HVV54_RS23240 () | 92066..92884 | - | 819 | WP_000646098.1 | hypothetical protein | VF |
| HVV54_RS23245 () | 92881..93339 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| HVV54_RS23250 () | 93734..94066 | - | 333 | Protein_111 | lipopolysaccharide core heptose(II)-phosphate phosphatase | - |
| HVV54_RS23255 () | 94158..95386 | + | 1229 | WP_164473239.1 | IS3 family transposase IS2 | Transposase |
| HVV54_RS23260 () | 95714..96916 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| HVV54_RS23265 () | 97001..97825 | - | 825 | WP_001238939.1 | hypothetical protein | - |
| HVV54_RS23270 () | 97976..99130 | - | 1155 | WP_001139957.1 | integrase | - |
| HVV54_RS23275 () | 99966..100172 | - | 207 | WP_000008649.1 | hypothetical protein | - |
| HVV54_RS23280 () | 100322..100570 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| HVV54_RS23285 () | 100567..101859 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| HVV54_RS23290 () | 101859..102515 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| HVV54_RS23295 () | 102500..103060 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| HVV54_RS23300 () | 103070..103684 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| HVV54_RS23305 () | 103702..104799 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| HVV54_RS23310 () | 104812..106365 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| HVV54_RS23315 () | 106376..106828 | - | 453 | WP_001247336.1 | hypothetical protein | VF |
| HVV54_RS23320 () | 106815..108110 | - | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| HVV54_RS23325 () | 108103..109785 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| HVV54_RS23330 () | 109799..110236 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| HVV54_RS23335 () | 110236..111303 | - | 1068 | WP_000742600.1 | hypothetical protein | VF |
| HVV54_RS23340 () | 111977..112429 | - | 453 | WP_000008893.1 | hypothetical protein | - |
| HVV54_RS23345 () | 112472..112726 | - | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| HVV54_RS23350 () | 112994..113560 | - | 567 | WP_000776428.1 | hypothetical protein | - |
| HVV54_RS23355 () | 113574..114257 | - | 684 | WP_000213857.1 | conjugal transfer protein TraC | - |
| HVV54_RS23360 () | 114511..115044 | - | 534 | WP_001303319.1 | transcription termination factor NusG | - |
| HVV54_RS23365 () | 115486..115773 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| HVV54_RS23370 () | 115691..115954 | - | 264 | WP_001324596.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|