MGE detailed information
MGE type: Conjugative plasmid MGE length: 114980 bp
Accession: NZ_CP057919 Location: 1..114980 Organism: Escherichia fergusonii strain RHB10-C04 Replicon: plasmid pRHB10-C04_2
Accession: NZ_CP057919 Location: 1..114980 Organism: Escherichia fergusonii strain RHB10-C04 Replicon: plasmid pRHB10-C04_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVW38_RS22005 () | 46..1077 | + | 1032 | WP_000907867.1 | replication initiation protein | - |
| HVW38_RS22010 () | 2027..2278 | + | 252 | WP_001139207.1 | plasmid stabilization protein | Antitoxin Detail |
| HVW38_RS22015 () | 2275..2562 | + | 288 | WP_000222775.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HVW38_RS22020 () | 2572..3117 | + | 546 | WP_181576141.1 | hypothetical protein | - |
| HVW38_RS22025 () | 3769..3882 | - | 114 | Protein_4 | proQ/FINO family protein | - |
| HVW38_RS22030 () | 3921..5459 | - | 1539 | WP_000998048.1 | IS66 family transposase ISEc8 | Transposase |
| HVW38_RS22035 () | 5509..5856 | - | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| HVW38_RS22040 () | 5853..6233 | - | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| HVW38_RS22045 () | 6321..6506 | - | 186 | Protein_8 | proQ/FINO family protein | - |
| HVW38_RS22050 () | 6601..7347 | - | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| HVW38_RS22055 () | 7362..8903 | - | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| HVW38_RS22060 () | 9096..9182 | - | 87 | Protein_11 | proQ/FINO family protein | - |
| HVW38_RS22065 () | 9688..10703 | - | 1016 | Protein_12 | IS91 family transposase ISEc37 | Transposase |
| HVW38_RS22070 () | 10703..11068 | - | 366 | WP_000124135.1 | hypothetical protein | - |
| HVW38_RS22075 () | 12055..12783 | + | 729 | WP_021555111.1 | putative fimbrial chaperone EcpE | VF |
| HVW38_RS22080 () | 12848..13348 | + | 501 | WP_181576142.1 | CFA/I fimbrial subunit B | VF |
| HVW38_RS22085 () | 13387..16023 | + | 2637 | WP_181576143.1 | TcfC E-set like domain-containing protein | - |
| HVW38_RS22090 () | 16083..17177 | + | 1095 | WP_181576144.1 | hypothetical protein | - |
| HVW38_RS22095 () | 17537..17842 | - | 306 | Protein_18 | IS66 family transposase IS682 | Transposase |
| HVW38_RS22100 () | 17931..18296 | + | 366 | WP_112032305.1 | transposase | - |
| HVW38_RS22105 () | 18296..18907 | + | 612 | Protein_20 | IS91 family transposase IS91 | Transposase |
| HVW38_RS22110 () | 18967..19155 | - | 189 | Protein_21 | IS66 family transposase | - |
| HVW38_RS22115 () | 19216..20349 | + | 1134 | WP_181576145.1 | IS110 family transposase ISEc45 | Transposase |
| HVW38_RS22120 () | 20572..21786 | + | 1215 | WP_181576146.1 | IS256 family transposase IS1414 | Transposase |
| HVW38_RS22125 () | 21786..22139 | - | 354 | Protein_24 | IS256 family transposase IS1414 | Transposase |
| HVW38_RS22130 () | 22275..22877 | + | 603 | WP_181576147.1 | IS66 family transposase IS679 | Transposase |
| HVW38_RS22135 () | 22877..23224 | + | 348 | WP_069906977.1 | IS66 family transposase ISCro1 | Transposase |
| HVW38_RS22140 () | 23244..24815 | + | 1572 | WP_181576148.1 | IS66 family transposase ISCro1 | Transposase |
| HVW38_RS22145 () | 25554..25865 | + | 312 | WP_000483532.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HVW38_RS22150 () | 25865..26152 | + | 288 | WP_024195838.1 | helix-turn-helix transcriptional regulator | - |
| HVW38_RS22155 () | 26151..26264 | - | 114 | Protein_30 | IS91 family transposase | - |
| HVW38_RS22160 () | 26820..27824 | - | 1005 | WP_088551065.1 | Abi family protein | - |
| HVW38_RS22165 () | 27972..28553 | - | 582 | WP_097700241.1 | hypothetical protein | - |
| HVW38_RS22170 () | 28800..29300 | + | 501 | WP_000528932.1 | hypothetical protein | - |
| HVW38_RS22175 () | 29313..29594 | + | 282 | WP_181576149.1 | hypothetical protein | - |
| HVW38_RS22180 () | 29610..30086 | + | 477 | WP_181576150.1 | hypothetical protein | - |
| HVW38_RS22185 () | 30253..31386 | + | 1134 | WP_181576151.1 | DUF3800 domain-containing protein | - |
| HVW38_RS22190 () | 31420..31932 | - | 513 | WP_000151784.1 | hypothetical protein | - |
| HVW38_RS22195 () | 32163..32240 | + | 78 | Protein_38 | helix-turn-helix domain-containing protein | - |
| HVW38_RS22200 () | 32484..32828 | + | 345 | WP_001559862.1 | type II toxin-antitoxin system PrlF family antitoxin | Antitoxin Detail |
| HVW38_RS22205 () | 32851..33345 | + | 495 | WP_024195926.1 | type II toxin-antitoxin system YhaV family toxin | Toxin Detail |
| HVW38_RS22210 () | 33527..37333 | + | 3807 | WP_181576152.1 | hypothetical protein | - |
| HVW38_RS22215 () | 37864..38214 | + | 351 | WP_000493380.1 | hypothetical protein | - |
| HVW38_RS22220 () | 38273..39094 | + | 822 | WP_001316850.1 | hypothetical protein | - |
| HVW38_RS22225 () | 39094..39363 | + | 270 | Protein_44 | tyrosine-type recombinase/integrase | - |
| HVW38_RS22230 () | 39425..40222 | - | 798 | WP_000544830.1 | IS21 family transposase IS21 | Transposase |
| HVW38_RS22235 () | 40222..41394 | - | 1173 | WP_181575950.1 | IS21 family transposase IS21 | Transposase |
| HVW38_RS22240 () | 41496..42008 | + | 513 | Protein_47 | IS91 family transposase ISSod25 | Transposase |
| HVW38_RS22245 () | 42187..42831 | + | 645 | WP_001144036.1 | ParA family protein | - |
| HVW38_RS22250 () | 42918..43226 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| HVW38_RS22255 () | 43639..44619 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| HVW38_RS22260 () | 44612..45028 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| HVW38_RS22265 () | 45030..46304 | - | 1275 | WP_000457498.1 | Y-family DNA polymerase | - |
| HVW38_RS22270 () | 46304..46741 | - | 438 | WP_063101788.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HVW38_RS22275 () | 46738..46986 | - | 249 | WP_001775014.1 | DinI-like family protein | - |
| HVW38_RS22280 () | 47404..48306 | + | 903 | WP_181576155.1 | DUF1281 domain-containing protein | - |
| HVW38_RS22285 () | 48303..48614 | + | 312 | WP_014640311.1 | hypothetical protein | - |
| HVW38_RS22290 () | 48690..49373 | + | 684 | WP_096970087.1 | DNA methylase | - |
| HVW38_RS22295 () | 49374..49595 | + | 222 | WP_001104885.1 | hypothetical protein | - |
| HVW38_RS22300 () | 49608..50042 | + | 435 | WP_000274471.1 | DUF1380 family protein | - |
| HVW38_RS22305 () | 50042..50863 | + | 822 | WP_181576153.1 | hypothetical protein | - |
| HVW38_RS22310 () | 51398..51700 | + | 303 | WP_077635719.1 | antirestriction protein | - |
| HVW38_RS22315 () | 51747..52169 | + | 423 | WP_000271744.1 | DUF1380 family protein | - |
| HVW38_RS22320 () | 52166..52357 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| HVW38_RS22325 () | 52320..52742 | + | 423 | WP_181576156.1 | hypothetical protein | - |
| HVW38_RS22330 () | 53126..53653 | + | 528 | WP_181576154.1 | single-stranded DNA-binding protein | - |
| HVW38_RS22335 () | 53711..53944 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| HVW38_RS22340 () | 54003..55961 | + | 1959 | WP_134881395.1 | ParB/RepB/Spo0J family partition protein | - |
| HVW38_RS22345 () | 56016..56450 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| HVW38_RS22350 () | 56447..57166 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| HVW38_RS22355 () | 57163..57759 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| HVW38_RS22360 () | 58222..58722 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| HVW38_RS22365 () | 59451..59885 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| HVW38_RS22370 () | 59979..60245 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| HVW38_RS22375 () | 60310..61248 | + | 939 | WP_000038403.1 | Recombination-promoting nuclease RpnA | VF |
| HVW38_RS22380 () | 61248..61493 | + | 246 | WP_001260884.1 | hypothetical protein | - |
| HVW38_RS22385 () | 61524..61775 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| HVW38_RS22390 () | 61935..62111 | - | 177 | WP_181576134.1 | hypothetical protein | - |
| HVW38_RS22395 () | 62355..63203 | + | 849 | WP_001077033.1 | DUF4942 domain-containing protein | - |
| HVW38_RS22400 () | 63288..63623 | - | 336 | WP_089618595.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| HVW38_RS22405 () | 63857..64189 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| HVW38_RS22410 () | 64200..66899 | + | 2700 | WP_181576135.1 | Protein TraI | Relaxase |
| HVW38_RS22415 () | 66936..69227 | - | 2292 | WP_001289276.1 | hypothetical protein | - |
| HVW38_RS22420 () | 69220..70290 | - | 1071 | WP_001542508.1 | IncI1-type conjugal transfer protein TrbB | - |
| HVW38_RS22425 () | 70309..71517 | - | 1209 | WP_175237471.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 71697..71759 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 71697..71759 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 71697..71759 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 71697..71759 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| HVW38_RS22430 () | 71809..71961 | + | 153 | WP_024179514.1 | Hok/Gef family protein | Toxin Detail |
| HVW38_RS22435 () | 72033..72284 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| - () | 72678..72729 | - | 52 | NuclAT_1 | - | - |
| - () | 72678..72729 | - | 52 | NuclAT_1 | - | - |
| - () | 72678..72729 | - | 52 | NuclAT_1 | - | - |
| - () | 72678..72729 | - | 52 | NuclAT_1 | - | - |
| HVW38_RS22440 () | 73954..74163 | - | 210 | WP_015059315.1 | hemolysin expression modulator Hha | - |
| HVW38_RS22445 () | 74261..74875 | - | 615 | WP_015059316.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HVW38_RS22450 () | 74951..77119 | - | 2169 | WP_181576136.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| HVW38_RS22455 () | 77216..77800 | - | 585 | WP_003566808.1 | IncI1-type conjugal transfer protein TraX | - |
| HVW38_RS22460 () | 77829..79031 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| HVW38_RS22465 () | 78998..79612 | - | 615 | WP_000337400.1 | IncI1-type conjugal transfer protein TraV | - |
| HVW38_RS22470 () | 79612..82656 | - | 3045 | WP_001024780.1 | IncI1-type conjugal transfer protein TraU | - |
| HVW38_RS22475 () | 82746..83546 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| HVW38_RS22480 () | 83530..83718 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| HVW38_RS22485 () | 83782..84186 | - | 405 | WP_000086957.1 | IncI1-type conjugal transfer protein TraR | - |
| HVW38_RS22490 () | 84237..84764 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| HVW38_RS22495 () | 84764..85468 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| HVW38_RS22500 () | 85468..86757 | - | 1290 | WP_001271992.1 | conjugal transfer protein TraO | - |
| HVW38_RS22505 () | 86760..87743 | - | 984 | WP_001191879.1 | hypothetical protein | VF |
| HVW38_RS22510 () | 87754..88446 | - | 693 | WP_181576137.1 | DotI/IcmL family type IV secretion protein | - |
| HVW38_RS22515 () | 88443..88790 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| HVW38_RS22520 () | 88808..92575 | - | 3768 | WP_181576138.1 | DNA primase | - |
| HVW38_RS22525 () | 92665..93216 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| HVW38_RS22530 () | 93231..93521 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| HVW38_RS22535 () | 93518..94666 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| HVW38_RS22540 () | 94663..95481 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| HVW38_RS22545 () | 95478..95936 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| HVW38_RS22550 () | 96331..96915 | - | 585 | WP_181576139.1 | histidine phosphatase family protein | - |
| HVW38_RS22555 () | 96975..98177 | - | 1203 | WP_000976350.1 | conjugal transfer protein TraF | - |
| HVW38_RS22560 () | 98263..99086 | - | 824 | Protein_111 | conjugal transfer protein TraE | - |
| HVW38_RS22565 () | 99294..99419 | + | 126 | Protein_112 | transposase | - |
| HVW38_RS22570 () | 99476..100768 | - | 1293 | WP_181576140.1 | hypothetical protein | VF |
| HVW38_RS22575 () | 100768..101424 | - | 657 | WP_001193549.1 | hypothetical protein | VF |
| HVW38_RS22580 () | 101409..101969 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| HVW38_RS22585 () | 101979..102593 | - | 615 | WP_062858101.1 | hypothetical protein | VF |
| HVW38_RS22590 () | 102610..103695 | - | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| HVW38_RS22595 () | 103708..105261 | - | 1554 | WP_000362206.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| HVW38_RS22600 () | 105272..105724 | - | 453 | WP_001247337.1 | hypothetical protein | VF |
| HVW38_RS22605 () | 105711..107006 | - | 1296 | WP_000752780.1 | type 4b pilus protein PilO2 | - |
| HVW38_RS22610 () | 106999..108681 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| HVW38_RS22615 () | 108695..109132 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| HVW38_RS22620 () | 109132..110199 | - | 1068 | WP_042012078.1 | hypothetical protein | VF |
| HVW38_RS22625 () | 111246..111500 | - | 255 | WP_041031712.1 | PilI type IV pilus biogenesis protein | - |
| HVW38_RS22630 () | 111672..112355 | - | 684 | WP_001377964.1 | hypothetical protein | - |
| HVW38_RS22635 () | 112609..113142 | - | 534 | WP_001303319.1 | transcription termination factor NusG | - |
| HVW38_RS22640 () | 113585..113872 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| HVW38_RS22645 () | 113790..114053 | - | 264 | WP_001749178.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|