MGE detailed information
MGE type: Conjugative plasmid MGE length: 117379 bp
Accession: NZ_CP057682 Location: 1..117379 Organism: Escherichia fergusonii strain RHB18-C04 Replicon: plasmid pRHB18-C04_2
Accession: NZ_CP057682 Location: 1..117379 Organism: Escherichia fergusonii strain RHB18-C04 Replicon: plasmid pRHB18-C04_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVX35_RS22145 () | 1..1032 | + | 1032 | WP_181464541.1 | replication initiation protein | - |
| HVX35_RS22150 () | 2487..3107 | - | 621 | WP_181464542.1 | proQ/FINO family protein | - |
| HVX35_RS22155 () | 3870..4143 | + | 274 | Protein_2 | transposase | - |
| HVX35_RS22160 () | 4711..5016 | + | 306 | WP_181464576.1 | adhesin biosynthesis transcription regulatory family protein | - |
| HVX35_RS22165 () | 5843..6484 | + | 642 | WP_181464543.1 | DsbA family protein | - |
| HVX35_RS22170 () | 7080..7577 | + | 498 | WP_181464544.1 | polymer-forming cytoskeletal protein | - |
| HVX35_RS22175 () | 7577..8743 | + | 1167 | WP_181464545.1 | UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) | - |
| HVX35_RS22180 () | 8740..9516 | + | 777 | WP_181464546.1 | YaiO family outer membrane beta-barrel protein | - |
| HVX35_RS22185 () | 9542..10270 | + | 729 | WP_181815907.1 | hypothetical protein | - |
| HVX35_RS22190 () | 10267..11394 | + | 1128 | WP_181464548.1 | acyltransferase | - |
| HVX35_RS22195 () | 11391..12458 | + | 1068 | WP_181464549.1 | hypothetical protein | - |
| HVX35_RS22200 () | 12446..13705 | + | 1260 | WP_181464550.1 | glycosyltransferase family 2 protein | - |
| HVX35_RS22205 () | 13779..14993 | + | 1215 | WP_181464577.1 | phosphoadenosine phosphosulfate reductase | - |
| HVX35_RS22210 () | 14978..15616 | + | 639 | WP_181464551.1 | ParB/RepB/Spo0J family partition protein | - |
| HVX35_RS22215 () | 15644..16639 | - | 996 | Protein_14 | IS256 family transposase | - |
| HVX35_RS22220 () | 16734..17027 | - | 294 | WP_181464552.1 | increased serum survival lipoprotein Iss | - |
| HVX35_RS22225 () | 17734..17925 | + | 192 | Protein_16 | cobalamin biosynthesis protein CobW | - |
| HVX35_RS22230 () | 18227..18438 | - | 212 | Protein_17 | transposase | - |
| HVX35_RS22235 () | 18417..18691 | - | 275 | Protein_18 | ATP-binding protein | - |
| HVX35_RS22240 () | 18762..18968 | - | 207 | WP_181464578.1 | hypothetical protein | - |
| HVX35_RS22245 () | 19443..20030 | - | 588 | WP_181464579.1 | hypothetical protein | - |
| HVX35_RS22250 () | 20782..20970 | - | 189 | WP_181464553.1 | DUF4222 domain-containing protein | - |
| HVX35_RS22255 () | 22148..22741 | + | 594 | WP_181464554.1 | hypothetical protein | - |
| HVX35_RS22260 () | 22827..25226 | + | 2400 | WP_181464555.1 | PefC/AfrB family outer membrane usher protein | - |
| HVX35_RS22265 () | 25261..25926 | + | 666 | WP_181464580.1 | fimbrial chaperone | - |
| HVX35_RS22270 () | 25970..26470 | + | 501 | WP_181464556.1 | hypothetical protein | - |
| HVX35_RS22275 () | 26524..26754 | + | 231 | WP_181464557.1 | faeA-like family protein | - |
| HVX35_RS22280 () | 26826..27605 | + | 780 | WP_181464558.1 | hypothetical protein | - |
| HVX35_RS22285 () | 28190..28375 | + | 186 | Protein_28 | IS110 family transposase | - |
| HVX35_RS22290 () | 28701..30227 | + | 1527 | WP_181464559.1 | Tar ligand binding domain-containing protein | - |
| HVX35_RS22295 () | 31341..32711 | - | 1371 | WP_181464560.1 | efflux transporter outer membrane subunit | - |
| HVX35_RS22300 () | 32715..34655 | - | 1941 | WP_181464561.1 | MacB family efflux pump subunit | - |
| HVX35_RS22305 () | 34683..35840 | - | 1158 | WP_181464562.1 | efflux RND transporter periplasmic adaptor subunit | - |
| HVX35_RS22310 () | 35951..36901 | - | 951 | WP_181464563.1 | omptin family outer membrane protease | - |
| HVX35_RS22315 () | 37510..38622 | + | 1113 | WP_181464564.1 | porin OmpC | - |
| HVX35_RS22320 () | 38932..42063 | + | 3132 | WP_181464565.1 | hypothetical protein | - |
| HVX35_RS22325 () | 42612..42830 | + | 219 | WP_181464566.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| HVX35_RS22330 () | 42832..43137 | + | 306 | WP_175283076.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| HVX35_RS22335 () | 43138..43947 | + | 810 | WP_181464567.1 | site-specific integrase | - |
| HVX35_RS22340 () | 44084..44359 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| HVX35_RS22345 () | 44353..44997 | - | 645 | WP_000633913.1 | AAA family ATPase | - |
| HVX35_RS22350 () | 45226..46197 | + | 972 | WP_181464568.1 | plasmid segregation protein parM | - |
| HVX35_RS22355 () | 46202..46594 | + | 393 | WP_181464569.1 | plasmid partitioning/stability family protein | - |
| HVX35_RS22360 () | 46599..47870 | - | 1272 | Protein_43 | translesion error-prone DNA polymerase V subunit UmuC | - |
| HVX35_RS22365 () | 47870..48307 | - | 438 | WP_181464570.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HVX35_RS22370 () | 48304..48552 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| HVX35_RS22375 () | 48967..49869 | + | 903 | WP_181464581.1 | DUF1281 domain-containing protein | - |
| HVX35_RS22380 () | 49873..50177 | + | 305 | Protein_47 | hypothetical protein | - |
| HVX35_RS22385 () | 50254..50937 | + | 684 | WP_181464571.1 | DNA methylase | - |
| HVX35_RS22390 () | 50938..51159 | + | 222 | WP_181464572.1 | hypothetical protein | - |
| HVX35_RS22395 () | 51053..51607 | + | 555 | WP_181464573.1 | DUF1380 family protein | - |
| HVX35_RS22400 () | 51653..52345 | + | 693 | Protein_51 | hypothetical protein | - |
| HVX35_RS22405 () | 52882..53184 | + | 303 | WP_072256028.1 | antirestriction protein | - |
| HVX35_RS22410 () | 53231..53650 | + | 420 | WP_181464574.1 | DUF1380 family protein | - |
| HVX35_RS22415 () | 53650..53841 | + | 192 | WP_023181017.1 | hypothetical protein | - |
| HVX35_RS22420 () | 54174..54242 | - | 69 | Protein_55 | pilus protein | - |
| HVX35_RS22425 () | 54611..55138 | + | 528 | WP_046340330.1 | single-stranded DNA-binding protein | - |
| HVX35_RS22430 () | 55196..55429 | + | 234 | WP_000006012.1 | DUF905 family protein | - |
| HVX35_RS22435 () | 55488..57446 | + | 1959 | WP_181464575.1 | ParB/RepB/Spo0J family partition protein | - |
| HVX35_RS22440 () | 57501..57935 | + | 435 | WP_032235533.1 | conjugation system SOS inhibitor PsiB | - |
| HVX35_RS22445 () | 57932..58651 | + | 720 | WP_001276260.1 | plasmid SOS inhibition protein A | - |
| HVX35_RS22450 () | 58781..59956 | + | 1176 | WP_023210867.1 | transposase | - |
| HVX35_RS22455 () | 60404..60904 | + | 501 | WP_097463627.1 | antirestriction protein ArdA | - |
| HVX35_RS22460 () | 61633..62067 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| HVX35_RS22465 () | 62160..62426 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| HVX35_RS22470 () | 62491..63417 | + | 927 | WP_181464522.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| HVX35_RS22475 () | 63417..63698 | + | 282 | WP_168994714.1 | hypothetical protein | - |
| HVX35_RS22480 () | 63729..63980 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| HVX35_RS22485 () | 64014..64211 | - | 198 | Protein_68 | hypothetical protein | - |
| HVX35_RS22490 () | 64560..65408 | + | 849 | Protein_69 | DUF4942 domain-containing protein | - |
| HVX35_RS22495 () | 65494..65829 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| HVX35_RS22500 () | 66063..66395 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| HVX35_RS22505 () | 66406..69105 | + | 2700 | WP_096221534.1 | IncI1-type relaxase NikB | - |
| HVX35_RS22510 () | 69142..71433 | - | 2292 | WP_112868651.1 | conjugal transfer protein TrbC | - |
| HVX35_RS22515 () | 71426..72496 | - | 1071 | WP_181464523.1 | IncI1-type conjugal transfer protein TrbB | - |
| HVX35_RS22520 () | 72515..73723 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 73903..73965 | - | 63 | NuclAT_0 | - | - |
| - () | 73903..73965 | - | 63 | NuclAT_0 | - | - |
| - () | 73903..73965 | - | 63 | NuclAT_0 | - | - |
| - () | 73903..73965 | - | 63 | NuclAT_0 | - | - |
| HVX35_RS22525 () | 74015..74167 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| HVX35_RS22530 () | 74239..74490 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| - () | 74877..74928 | - | 52 | NuclAT_1 | - | - |
| - () | 74877..74928 | - | 52 | NuclAT_1 | - | - |
| - () | 74877..74928 | - | 52 | NuclAT_1 | - | - |
| - () | 74877..74928 | - | 52 | NuclAT_1 | - | - |
| HVX35_RS22535 () | 75414..75590 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| HVX35_RS22540 () | 75982..76191 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| HVX35_RS22545 () | 76263..76925 | - | 663 | WP_000644794.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HVX35_RS22550 () | 76996..79164 | - | 2169 | WP_000698368.1 | DotA/TraY family protein | - |
| HVX35_RS22555 () | 79261..79845 | - | 585 | WP_001037985.1 | IncI1-type conjugal transfer protein TraX | - |
| HVX35_RS22560 () | 79874..81076 | - | 1203 | WP_001697941.1 | IncI1-type conjugal transfer protein TraW | - |
| HVX35_RS22565 () | 81043..81657 | - | 615 | WP_001542516.1 | IncI1-type conjugal transfer protein TraV | - |
| HVX35_RS22570 () | 81657..84701 | - | 3045 | WP_181464524.1 | IncI1-type conjugal transfer protein TraU | - |
| HVX35_RS22575 () | 84791..85591 | - | 801 | WP_181464525.1 | IncI1-type conjugal transfer protein TraT | - |
| HVX35_RS22580 () | 85575..85763 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| HVX35_RS22585 () | 85827..86231 | - | 405 | WP_077137006.1 | IncI1-type conjugal transfer protein TraR | - |
| HVX35_RS22590 () | 86282..86809 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| HVX35_RS22595 () | 86809..87513 | - | 705 | WP_000801919.1 | IncI1-type conjugal transfer protein TraP | - |
| HVX35_RS22600 () | 87513..88802 | - | 1290 | WP_181464526.1 | conjugal transfer protein TraO | - |
| HVX35_RS22605 () | 88805..89788 | - | 984 | WP_181464527.1 | IncI1-type conjugal transfer protein TraN | - |
| HVX35_RS22610 () | 89799..90491 | - | 693 | WP_080242525.1 | DotI/IcmL family type IV secretion protein | - |
| HVX35_RS22615 () | 90488..90835 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| HVX35_RS22620 () | 90853..94620 | - | 3768 | WP_080242524.1 | DNA primase | - |
| HVX35_RS22625 () | 94710..95261 | - | 552 | WP_000014584.1 | phospholipase D family protein | - |
| HVX35_RS22630 () | 95276..95566 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| HVX35_RS22635 () | 95563..96711 | - | 1149 | WP_181464528.1 | plasmid transfer ATPase TraJ | - |
| HVX35_RS22640 () | 96708..97526 | - | 819 | WP_181464529.1 | IncI1-type conjugal transfer lipoprotein TraI | - |
| HVX35_RS22645 () | 97523..97981 | - | 459 | WP_181464530.1 | IncI1-type conjugal transfer lipoprotein TraH | - |
| HVX35_RS22650 () | 98496..99698 | - | 1203 | WP_181464531.1 | conjugal transfer protein TraF | - |
| HVX35_RS22655 () | 99784..100607 | - | 824 | Protein_102 | conjugal transfer protein TraE | - |
| HVX35_RS22660 () | 100972..102300 | - | 1329 | WP_181464532.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| HVX35_RS22665 () | 102300..102956 | - | 657 | WP_001193549.1 | prepilin peptidase | - |
| HVX35_RS22670 () | 102941..103501 | - | 561 | WP_172692750.1 | lytic transglycosylase domain-containing protein | - |
| HVX35_RS22675 () | 103511..104125 | - | 615 | WP_000908227.1 | type IV prepilin | - |
| HVX35_RS22680 () | 104142..105227 | - | 1086 | WP_001208802.1 | type II secretion system F family protein | - |
| HVX35_RS22685 () | 105240..106793 | - | 1554 | WP_001545756.1 | Flp pilus assembly complex ATPase component TadA | - |
| HVX35_RS22690 () | 106804..107256 | - | 453 | WP_001247333.1 | type IV pilus biogenesis protein PilP | - |
| HVX35_RS22695 () | 107243..108538 | - | 1296 | WP_181464533.1 | type 4b pilus protein PilO2 | - |
| HVX35_RS22700 () | 108531..110213 | - | 1683 | WP_181464534.1 | PilN family type IVB pilus formation outer membrane protein | - |
| HVX35_RS22705 () | 110227..110664 | - | 438 | WP_181464535.1 | type IV pilus biogenesis protein PilM | - |
| HVX35_RS22710 () | 110664..111731 | - | 1068 | WP_181464536.1 | type IV pilus biogenesis lipoprotein PilL | - |
| HVX35_RS22715 () | 112678..112938 | - | 261 | WP_181464537.1 | hypothetical protein | - |
| HVX35_RS22720 () | 112935..113231 | - | 297 | WP_181464538.1 | PilI type IV pilus biogenesis protein | - |
| HVX35_RS22725 () | 113454..114020 | - | 567 | WP_181464539.1 | conjugal transfer protein TraD | - |
| HVX35_RS22730 () | 114034..114717 | - | 684 | WP_181464540.1 | conjugal transfer protein TraC | - |
| HVX35_RS22735 () | 114972..115505 | - | 534 | WP_001372168.1 | transcription termination factor NusG | - |
| HVX35_RS22740 () | 115942..116229 | - | 288 | WP_000074853.1 | hypothetical protein | - |
| HVX35_RS22745 () | 116147..116410 | - | 264 | Protein_120 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|