MGE detailed information
MGE type: Conjugative plasmid MGE length: 95042 bp
Accession: NZ_CP056909 Location: 1..95042 Organism: Citrobacter freundii strain RHBSTW-00011 Replicon: plasmid pRHBSTW-00011_3
Accession: NZ_CP056909 Location: 1..95042 Organism: Citrobacter freundii strain RHBSTW-00011 Replicon: plasmid pRHBSTW-00011_3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV032_RS26100 () | 46..1077 | + | 1032 | WP_080182593.1 | replication initiation protein | - |
| HV032_RS26105 () | 2028..2279 | + | 252 | WP_001139206.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| HV032_RS26110 () | 2276..2563 | + | 288 | WP_001523468.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HV032_RS26115 () | 2573..3118 | + | 546 | WP_001523466.1 | hypothetical protein | - |
| HV032_RS26120 () | 3604..4191 | + | 588 | WP_024229909.1 | serine acetyltransferase | - |
| HV032_RS26125 () | 4470..5063 | - | 594 | WP_001523457.1 | hypothetical protein | - |
| HV032_RS26130 () | 6066..6830 | + | 765 | WP_021013229.1 | helix-turn-helix domain-containing protein | - |
| HV032_RS26135 () | 6994..8103 | - | 1110 | WP_000737315.1 | porin OmpC | - |
| HV032_RS26140 () | 9123..9713 | - | 591 | WP_000194574.1 | hypothetical protein | - |
| HV032_RS26145 () | 9713..9970 | - | 258 | WP_001542562.1 | hypothetical protein | - |
| HV032_RS26150 () | 10538..10951 | + | 414 | WP_000465036.1 | hypothetical protein | - |
| HV032_RS26155 () | 10953..11732 | + | 780 | WP_057521265.1 | site-specific integrase | - |
| HV032_RS26160 () | 11912..12556 | + | 645 | WP_001144036.1 | ParA family protein | - |
| HV032_RS26165 () | 12643..12951 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| HV032_RS26170 () | 13365..14345 | + | 981 | WP_000688519.1 | plasmid segregation protein ParM | - |
| HV032_RS26175 () | 14338..14754 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| HV032_RS26180 () | 14784..14939 | - | 156 | Protein_16 | protein ImpB | - |
| HV032_RS26185 () | 14939..15376 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HV032_RS26190 () | 15373..15621 | - | 249 | WP_000618111.1 | DinI-like family protein | - |
| HV032_RS26195 () | 16039..16941 | + | 903 | WP_003981130.1 | DUF1281 domain-containing protein | - |
| HV032_RS26200 () | 16938..17248 | + | 311 | Protein_20 | hypothetical protein | - |
| HV032_RS26205 () | 17325..18008 | + | 684 | WP_021013243.1 | DNA methylase | - |
| HV032_RS26210 () | 18009..18230 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| HV032_RS26215 () | 18244..18678 | + | 435 | WP_000274500.1 | DUF1380 family protein | - |
| HV032_RS26220 () | 18724..19500 | + | 777 | WP_021013244.1 | hypothetical protein | - |
| HV032_RS26225 () | 19913..20338 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| HV032_RS26230 () | 20385..20807 | + | 423 | WP_001629087.1 | DUF1380 family protein | - |
| HV032_RS26235 () | 20804..20995 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| HV032_RS26240 () | 21066..21380 | + | 315 | WP_181634760.1 | hypothetical protein | - |
| HV032_RS26245 () | 21764..22291 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| HV032_RS26250 () | 22349..22582 | + | 234 | WP_000006014.1 | DUF905 domain-containing protein | - |
| HV032_RS26255 () | 22641..24599 | + | 1959 | WP_057521287.1 | ParB/RepB/Spo0J family partition protein | - |
| HV032_RS26260 () | 24654..25088 | + | 435 | WP_001535709.1 | conjugation system SOS inhibitor PsiB | - |
| HV032_RS26265 () | 25085..25804 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| HV032_RS26270 () | 25801..26145 | + | 345 | WP_021013248.1 | hypothetical protein | - |
| HV032_RS26275 () | 26165..27391 | - | 1227 | WP_172684473.1 | IS200-IS605 family transposase ISSen6 | Transposase |
| HV032_RS26280 () | 27450..27854 | + | 405 | WP_001175010.1 | IS200-IS605 family transposase ISSen6 | Transposase |
| HV032_RS26285 () | 28594..29094 | + | 501 | WP_000117627.1 | antirestriction protein ArdA | - |
| HV032_RS26290 () | 29823..30257 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| HV032_RS26295 () | 30351..30617 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| HV032_RS26300 () | 30682..31608 | + | 927 | WP_000038402.1 | Recombination-promoting nuclease RpnA | VF |
| HV032_RS26305 () | 31608..31853 | + | 246 | WP_001260884.1 | hypothetical protein | - |
| HV032_RS26310 () | 31884..32135 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| HV032_RS26315 () | 32169..32366 | - | 198 | WP_001161115.1 | hypothetical protein | - |
| HV032_RS26320 () | 32715..33563 | + | 849 | WP_021013254.1 | DUF4942 domain-containing protein | - |
| HV032_RS26325 () | 33649..33984 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| HV032_RS26330 () | 34218..34550 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| HV032_RS26335 () | 34561..37260 | + | 2700 | WP_021013256.1 | Protein TraI | Relaxase |
| HV032_RS26340 () | 37297..39588 | - | 2292 | WP_001289276.1 | hypothetical protein | - |
| HV032_RS26345 () | 39581..40651 | - | 1071 | WP_021013257.1 | IncI1-type conjugal transfer protein TrbB | - |
| HV032_RS26350 () | 40670..41878 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 42058..42120 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 42058..42120 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 42058..42120 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 42058..42120 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| HV032_RS26355 () | 42170..42322 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| HV032_RS26360 () | 42394..42645 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| HV032_RS26365 () | 43689..43898 | - | 210 | WP_001140543.1 | hemolysin expression modulator Hha | - |
| HV032_RS26370 () | 43996..44658 | - | 663 | WP_021013261.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HV032_RS26375 () | 44729..46897 | - | 2169 | WP_000698368.1 | DotA/TraY family protein | - |
| HV032_RS26380 () | 46994..47578 | - | 585 | WP_021013262.1 | IncI1-type conjugal transfer protein TraX | - |
| HV032_RS26385 () | 47607..48809 | - | 1203 | WP_021013263.1 | IncI1-type conjugal transfer protein TraW | - |
| HV032_RS26390 () | 48776..49390 | - | 615 | WP_021013264.1 | IncI1-type conjugal transfer protein TraV | - |
| HV032_RS26395 () | 49390..52434 | - | 3045 | WP_021013265.1 | IncI1-type conjugal transfer protein TraU | - |
| HV032_RS26400 () | 52524..53324 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| HV032_RS26405 () | 53308..53496 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| HV032_RS26410 () | 53560..53964 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| HV032_RS26415 () | 54015..54536 | - | 522 | WP_001378561.1 | conjugal transfer protein TraQ | - |
| HV032_RS26420 () | 54614..55018 | - | 405 | WP_001175010.1 | IS200-IS605 family transposase ISSen6 | Transposase |
| HV032_RS26425 () | 55077..56303 | + | 1227 | WP_172684473.1 | IS200-IS605 family transposase ISSen6 | Transposase |
| HV032_RS26430 () | 56360..57064 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| HV032_RS26435 () | 57064..58353 | - | 1290 | WP_021013266.1 | conjugal transfer protein TraO | - |
| HV032_RS26440 () | 58356..59339 | - | 984 | WP_001191879.1 | hypothetical protein | VF |
| HV032_RS26445 () | 59350..60042 | - | 693 | WP_032072593.1 | DotI/IcmL family type IV secretion protein | - |
| HV032_RS26450 () | 60039..60386 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| HV032_RS26455 () | 60404..64171 | - | 3768 | WP_172684474.1 | DNA primase | - |
| HV032_RS26460 () | 64261..64812 | - | 552 | WP_021013269.1 | Phospholipase D | VF |
| HV032_RS26465 () | 64827..65117 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| HV032_RS26470 () | 65114..66262 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| HV032_RS26475 () | 66259..67077 | - | 819 | WP_001611721.1 | hypothetical protein | VF |
| HV032_RS26480 () | 67074..67532 | - | 459 | WP_021013270.1 | hypothetical protein | VF |
| HV032_RS26485 () | 67927..68511 | - | 585 | WP_021013271.1 | histidine phosphatase family protein | - |
| HV032_RS26490 () | 68571..69773 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| HV032_RS26495 () | 69858..70682 | - | 825 | WP_001238939.1 | hypothetical protein | - |
| HV032_RS26500 () | 70833..71987 | - | 1155 | WP_001139957.1 | integrase | - |
| HV032_RS26505 () | 71986..72072 | + | 87 | Protein_81 | shufflon protein D' | - |
| HV032_RS26510 () | 72121..72339 | + | 219 | WP_071527775.1 | shufflon protein D' | - |
| HV032_RS26515 () | 73875..74429 | - | 555 | Protein_83 | hypothetical protein | VF |
| HV032_RS26520 () | 74605..75011 | + | 407 | Protein_84 | TIR domain-containing protein | - |
| HV032_RS26525 () | 75050..75913 | - | 864 | WP_052432412.1 | DUF4231 domain-containing protein | - |
| HV032_RS26530 () | 75932..76382 | - | 451 | Protein_86 | Tn3 family transposase TnpR_Tn3 | Transposase |
| HV032_RS26535 () | 76652..79662 | + | 3011 | Protein_87 | Tn3 family transposase ISEc63 | Transposase |
| HV032_RS26540 () | 79697..80527 | - | 831 | Protein_88 | hypothetical protein | VF |
| HV032_RS26545 () | 80515..81171 | - | 657 | WP_001401940.1 | hypothetical protein | VF |
| HV032_RS26550 () | 81156..81716 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| HV032_RS26555 () | 81726..82340 | - | 615 | WP_021013275.1 | hypothetical protein | VF |
| HV032_RS26560 () | 82357..83442 | - | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| HV032_RS26565 () | 83455..85008 | - | 1554 | WP_001697923.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| HV032_RS26570 () | 85019..85471 | - | 453 | WP_001247333.1 | hypothetical protein | VF |
| HV032_RS26575 () | 85458..86753 | - | 1296 | WP_021013276.1 | type 4b pilus protein PilO2 | - |
| HV032_RS26580 () | 86746..88428 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| HV032_RS26585 () | 88442..88879 | - | 438 | WP_181634759.1 | hypothetical protein | VF |
| HV032_RS26590 () | 88879..89946 | - | 1068 | WP_001360287.1 | hypothetical protein | VF |
| HV032_RS26595 () | 90918..91178 | - | 261 | WP_052992372.1 | hypothetical protein | - |
| HV032_RS26600 () | 91298..91552 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| HV032_RS26605 () | 91724..92407 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| HV032_RS26610 () | 92661..93194 | - | 534 | WP_001303319.1 | transcription termination factor NusG | - |
| HV032_RS26615 () | 93647..93934 | - | 288 | WP_021013281.1 | conjugal transfer protein TraA | - |
| HV032_RS26620 () | 93852..94115 | - | 264 | Protein_104 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|